BQ623799

Overview
NameBQ623799
Unique NameBQ623799
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length374
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:626..999. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623799 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 1.860e-46
Identity = 86/88 (97.73%), Postives = 88/88 (100.00%), Query Frame = 1 
Query:    1 GGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 264
            GGPLGEVTDP+YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  119 GGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 206
[Close]
BLAST of BQ623799 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 1.860e-46
Identity = 86/88 (97.73%), Postives = 88/88 (100.00%), Query Frame = 1 
Query:    1 GGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 264
            GGPLGEVTDP+YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  168 GGPLGEVTDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 255
[Close]
BLAST of BQ623799 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 2.429e-46
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = 1 
Query:    1 GGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 264
            GGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  174 GGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 261
[Close]
BLAST of BQ623799 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 4.143e-46
Identity = 86/88 (97.73%), Postives = 87/88 (98.86%), Query Frame = 1 
Query:    1 GGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 264
            GGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL+NL DHLADPVNNNAWAYATNFVPGK
Sbjct:  180 GGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVNNNAWAYATNFVPGK 267
[Close]
BLAST of BQ623799 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 5.410e-46
Identity = 85/88 (96.59%), Postives = 88/88 (100.00%), Query Frame = 1 
Query:    1 GGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 264
            GGPLGEVTDP+YPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  187 GGPLGEVTDPIYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 274
[Close]
BLAST of BQ623799 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 5.410e-46
Identity = 86/88 (97.73%), Postives = 87/88 (98.86%), Query Frame = 1 
Query:    1 GGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 264
            GGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  180 GGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267
[Close]
BLAST of BQ623799 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 182.57 bits (462), Expect = 5.410e-46
Identity = 86/88 (97.73%), Postives = 87/88 (98.86%), Query Frame = 1 
Query:    1 GGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 264
            GGPLGEV DPLYPGG+FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  178 GGPLGEVVDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
[Close]
BLAST of BQ623799 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 7.066e-46
Identity = 86/88 (97.73%), Postives = 87/88 (98.86%), Query Frame = 1 
Query:    1 GGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 264
            GGPLGEV DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  180 GGPLGEVVDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 267
[Close]
BLAST of BQ623799 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 7.066e-46
Identity = 86/88 (97.73%), Postives = 87/88 (98.86%), Query Frame = 1 
Query:    1 GGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 264
            GGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  180 GGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267
[Close]
BLAST of BQ623799 vs. ExPASy Swiss-Prot
Match: CB22_TOBAC (Chlorophyll a-b binding protein 21, chloroplastic OS=Nicotiana tabacum GN=CAB21 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 7.066e-46
Identity = 86/88 (97.73%), Postives = 87/88 (98.86%), Query Frame = 1 
Query:    1 GGPLGEVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 264
            GGPLGEV DPLYPGGSFDPLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  178 GGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
The following BLAST results are available for this feature:
BLAST of BQ623799 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 77
Match NameE-valueIdentityDescription
CB22_CUCSA1.860e-4697.73Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB21_CUCSA1.860e-4697.73Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_ORYSJ2.429e-4698.86Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB27_TOBAC4.143e-4697.73Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB2B_PINSY5.410e-4696.59Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB25_PETSP5.410e-4697.73Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB21_ORYSJ5.410e-4697.73Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2G_SOLLC7.066e-4697.73Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB24_TOBAC7.066e-4697.73Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB22_TOBAC7.066e-4697.73Chlorophyll a-b binding protein 21, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00890 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00890 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623799 ID=BQ623799; Name=BQ623799; organism=Citrus sinensis; type=EST; length=374bp
GGAGGGCCGCTCGGTGAAGTGACTGACCCATTGTACCCAGGTGGCAGCTT
TGATCCATTGGGTTTGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGG
TTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTC
TTCGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGA
CCACTTGGCTGACCCTGTCAATAACAATGCCTGGGCCTACGCCACCAACT
TTGTCCCCGGAAAGTGAGCTTCGGTTGATAAGAGTTTTTCTCTTTTCGGT
TTCTTGGATATCATGTAAATCTGTTGTGAGCTCATGGAAGCTTTAATTTG
AGTTGTGATTATTTATAAAATGCT
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