BQ623856

Overview
NameBQ623856
Unique NameBQ623856
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length471
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623856 vs. ExPASy Swiss-Prot
Match: SMT3_ARATH (Ubiquitin-like protein SMT3 OS=Arabidopsis thaliana GN=SMT3 PE=1 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 2.271e-42
Identity = 82/89 (92.13%), Postives = 85/89 (95.51%), Query Frame = 2
Query:   68 QEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 334
            QEEDKKP D  AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSV++NSIAFLFDGRRLR EQTPDEL+MEDGDEIDAMLHQTGG
Sbjct:    5 QEEDKKPGDGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNSIAFLFDGRRLRAEQTPDELDMEDGDEIDAMLHQTGG 93          
BLAST of BQ623856 vs. ExPASy Swiss-Prot
Match: SMT3_ORYSJ (Ubiquitin-like protein SMT3 OS=Oryza sativa subsp. japonica GN=SMT3 PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 2.125e-40
Identity = 82/93 (88.17%), Postives = 85/93 (91.40%), Query Frame = 2
Query:   71 EEDKKP---NDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGML 340
            EEDKKP       AHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSV++N+IAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG L
Sbjct:    6 EEDKKPAGGEGGGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVDMNAIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGCL 98          
BLAST of BQ623856 vs. ExPASy Swiss-Prot
Match: PMT3_SCHPO (Ubiquitin-like protein pmt3/smt3 OS=Schizosaccharomyces pombe GN=pmt3 PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 9.584e-25
Identity = 53/106 (50.00%), Postives = 74/106 (69.81%), Query Frame = 2
Query:   17 SVRDEAEERMSGVTNTPQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 334
            ++ D  +  ++  T    ++D KP+ +  HINLKV GQD NEVFF+IK++T+  KLM  YC RQ   +NS+ FL DG R+R +QTP EL+MEDGD+I+A+L Q GG
Sbjct:    8 NISDADKSAITPTTGDTSQQDVKPSTE--HINLKVVGQDNNEVFFKIKKTTEFSKLMKIYCARQGKSMNSLRFLVDGERIRPDQTPAELDMEDGDQIEAVLEQLGG 111          
BLAST of BQ623856 vs. ExPASy Swiss-Prot
Match: SUMO3_XENTR (Small ubiquitin-related modifier 3 OS=Xenopus tropicalis GN=sumo3 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 7.107e-20
Identity = 50/91 (54.95%), Postives = 59/91 (64.84%), Query Frame = 2
Query:   65 PQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGM 337
            P+E  K  ND   HINLKV GQDG+ V F+IKR T L KLM AYCDRQ + +  I F FDG+ +    TP +LEMED D ID    QTGG+
Sbjct:    6 PKEGVKTEND---HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCDRQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 93          
BLAST of BQ623856 vs. ExPASy Swiss-Prot
Match: SUMO3_XENLA (Small ubiquitin-related modifier 3 OS=Xenopus laevis GN=sumo3 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 7.107e-20
Identity = 50/91 (54.95%), Postives = 59/91 (64.84%), Query Frame = 2
Query:   65 PQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGM 337
            P+E  K  ND   HINLKV GQDG+ V F+IKR T L KLM AYCDRQ + +  I F FDG+ +    TP +LEMED D ID    QTGG+
Sbjct:    6 PKEGVKTEND---HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCDRQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 93          
BLAST of BQ623856 vs. ExPASy Swiss-Prot
Match: SUMO3_CHICK (Small ubiquitin-related modifier 3 OS=Gallus gallus GN=SUMO3 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.583e-19
Identity = 49/91 (53.85%), Postives = 59/91 (64.84%), Query Frame = 2
Query:   65 PQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGM 337
            P+E  K  ND   HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG+
Sbjct:    6 PKEGVKTEND---HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINEADTPAQLEMEDEDTIDVFQQQTGGL 93          
BLAST of BQ623856 vs. ExPASy Swiss-Prot
Match: SUMO3_HUMAN (Small ubiquitin-related modifier 3 OS=Homo sapiens GN=SUMO3 PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 2.068e-19
Identity = 49/91 (53.85%), Postives = 59/91 (64.84%), Query Frame = 2
Query:   65 PQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGGM 337
            P+E  K  ND   HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG+
Sbjct:    6 PKEGVKTEND---HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 93          
BLAST of BQ623856 vs. ExPASy Swiss-Prot
Match: SUMO3_RAT (Small ubiquitin-related modifier 3 OS=Rattus norvegicus GN=Sumo3 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.701e-19
Identity = 49/90 (54.44%), Postives = 58/90 (64.44%), Query Frame = 2
Query:   65 PQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 334
            P+E  K  ND   HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG
Sbjct:    6 PKEGVKTEND---HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 92          
BLAST of BQ623856 vs. ExPASy Swiss-Prot
Match: SUMO3_MOUSE (Small ubiquitin-related modifier 3 OS=Mus musculus GN=Sumo3 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.701e-19
Identity = 49/90 (54.44%), Postives = 58/90 (64.44%), Query Frame = 2
Query:   65 PQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 334
            P+E  K  ND   HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG
Sbjct:    6 PKEGVKTEND---HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 92          
BLAST of BQ623856 vs. ExPASy Swiss-Prot
Match: SUMO3_DANRE (Small ubiquitin-related modifier 3 OS=Danio rerio GN=sumo3 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.701e-19
Identity = 49/90 (54.44%), Postives = 58/90 (64.44%), Query Frame = 2
Query:   65 PQEEDKKPNDQSAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAYCDRQSVELNSIAFLFDGRRLRGEQTPDELEMEDGDEIDAMLHQTGG 334
            P+E  K  ND   HINLKV GQDG+ V F+IKR T L KLM AYC+RQ + +  I F FDG+ +    TP +LEMED D ID    QTGG
Sbjct:    6 PREGVKTEND---HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSIRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 92          
The following BLAST results are available for this feature:
BLAST of BQ623856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
SMT3_ARATH2.271e-4292.13Ubiquitin-like protein SMT3 OS=Arabidopsis thalian... [more]
SMT3_ORYSJ2.125e-4088.17Ubiquitin-like protein SMT3 OS=Oryza sativa subsp.... [more]
PMT3_SCHPO9.584e-2550.00Ubiquitin-like protein pmt3/smt3 OS=Schizosaccharo... [more]
SUMO3_XENTR7.107e-2054.95Small ubiquitin-related modifier 3 OS=Xenopus trop... [more]
SUMO3_XENLA7.107e-2054.95Small ubiquitin-related modifier 3 OS=Xenopus laev... [more]
SUMO3_CHICK1.583e-1953.85Small ubiquitin-related modifier 3 OS=Gallus gallu... [more]
SUMO3_HUMAN2.068e-1953.85Small ubiquitin-related modifier 3 OS=Homo sapiens... [more]
SUMO3_RAT2.701e-1954.44Small ubiquitin-related modifier 3 OS=Rattus norve... [more]
SUMO3_MOUSE2.701e-1954.44Small ubiquitin-related modifier 3 OS=Mus musculus... [more]
SUMO3_DANRE2.701e-1954.44Small ubiquitin-related modifier 3 OS=Danio rerio ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00936 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00936 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623856 ID=BQ623856; Name=BQ623856; organism=Citrus sinensis; type=EST; length=471bp
ATAGCGAGAGAGAGAGAGTGTGAGAGACGAAGCAGAAGAGAGAATGTCAG
GCGTCACGAACACTCCTCAAGAGGAAGATAAGAAGCCCAACGATCAATCG
GCTCACATCAATCTCAAAGTCAAGGGCCAGGATGGGAATGAGGTTTTCTT
CAGGATCAAACGAAGCACCCAACTAAAGAAGCTTATGAATGCATACTGTG
ATAGACAATCTGTGGAGCTGAACTCAATTGCCTTCTTGTTTGATGGTCGC
CGTCTTCGAGGAGAGCAAACCCCTGATGAGCTGGAAATGGAAGATGGTGA
TGAGATTGATGCCATGCTGCACCAAACCGGAGGAATGCTGATGTTCTAAT
TATGTAATACTCGTTTGAGAGCTTATTAGTAGTATTAATGTAAAACTATT
AATGGATGGATGTAAGTTATGCAAAGGCTCAAGATTGTGTATTTGCGATC
TACACCATTATGTTTTGTGGC
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