BQ623865

Overview
NameBQ623865
Unique NameBQ623865
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623865 vs. ExPASy Swiss-Prot
Match: RAC2_LOTJA (Rac-like GTP-binding protein RAC2 OS=Lotus japonicus GN=RAC2 PE=2 SV=1)

HSP 1 Score: 304.679 bits (779), Expect = 3.287e-82
Identity = 148/155 (95.48%), Postives = 153/155 (98.71%), Query Frame = 1
Query:  256 MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVY 720
            M+TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSL+S+ASYENISKKWIPELRHYAPTVPIVLVGTK DLRED+QYLI+HPGATPITTAQGEELKK IGAAVY
Sbjct:    1 MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLLSRASYENISKKWIPELRHYAPTVPIVLVGTKLDLREDRQYLIDHPGATPITTAQGEELKKAIGAAVY 155          
BLAST of BQ623865 vs. ExPASy Swiss-Prot
Match: RAC5_ORYSJ (Rac-like GTP-binding protein 5 OS=Oryza sativa subsp. japonica GN=RAC5 PE=2 SV=2)

HSP 1 Score: 292.352 bits (747), Expect = 1.688e-78
Identity = 139/155 (89.68%), Postives = 149/155 (96.13%), Query Frame = 1
Query:  256 MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVY 720
            M+ +RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYEN+SKKWIPELRHYAP VPI+LVGTK DLR+DKQ+ ++HPGA PI+TAQGEEL+KLIGAA Y
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFVDHPGAVPISTAQGEELRKLIGAAAY 155          
BLAST of BQ623865 vs. ExPASy Swiss-Prot
Match: RAC13_GOSHI (Rac-like GTP-binding protein RAC13 OS=Gossypium hirsutum GN=RAC13 PE=2 SV=1)

HSP 1 Score: 292.352 bits (747), Expect = 1.688e-78
Identity = 141/155 (90.97%), Postives = 149/155 (96.13%), Query Frame = 1
Query:  256 MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVY 720
            M+TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENI KKWIPELRHYA  VP+VLVGTK DLR+DKQ+LI+HPGATPI+T+QGEELKK+IGA  Y
Sbjct:    1 MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIYKKWIPELRHYAHNVPVVLVGTKLDLRDDKQFLIDHPGATPISTSQGEELKKMIGAVTY 155          
BLAST of BQ623865 vs. ExPASy Swiss-Prot
Match: RAC7_ORYSJ (Rac-like GTP-binding protein 7 OS=Oryza sativa subsp. japonica GN=RAC7 PE=2 SV=1)

HSP 1 Score: 291.967 bits (746), Expect = 2.205e-78
Identity = 140/155 (90.32%), Postives = 148/155 (95.48%), Query Frame = 1
Query:  256 MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVY 720
            M+TARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENI KKWIPELRHYAP VPIVLVGTK DLREDKQ+ ++HPG  PI+TAQGEELK++IGAA Y
Sbjct:    1 MSTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWIPELRHYAPNVPIVLVGTKLDLREDKQFFLDHPGLAPISTAQGEELKRMIGAAAY 155          
BLAST of BQ623865 vs. ExPASy Swiss-Prot
Match: RAC4_ARATH (Rac-like GTP-binding protein ARAC4 OS=Arabidopsis thaliana GN=ARAC4 PE=1 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 2.437e-77
Identity = 138/152 (90.79%), Postives = 147/152 (96.71%), Query Frame = 1
Query:  265 ARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVY 720
            +RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENI+KKWIPELRHYAP VPI+LVGTK DLR+DKQ+ I+HPGA PITT QGEELKKLIG+AVY
Sbjct:    3 SRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSAVY 154          
BLAST of BQ623865 vs. ExPASy Swiss-Prot
Match: RAC5_ARATH (Rac-like GTP-binding protein ARAC5 OS=Arabidopsis thaliana GN=ARAC5 PE=1 SV=1)

HSP 1 Score: 288.115 bits (736), Expect = 3.183e-77
Identity = 136/155 (87.74%), Postives = 148/155 (95.48%), Query Frame = 1
Query:  256 MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVY 720
            M+ +RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYEN++KKWIPELRHYAP VPI+LVGTK DLR+DKQ+ I+HPGA PITT QGEELKKLIG+ +Y
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIY 155          
BLAST of BQ623865 vs. ExPASy Swiss-Prot
Match: RAC1_ARATH (Rac-like GTP-binding protein ARAC1 OS=Arabidopsis thaliana GN=ARAC1 PE=2 SV=1)

HSP 1 Score: 287.73 bits (735), Expect = 4.158e-77
Identity = 137/155 (88.39%), Postives = 148/155 (95.48%), Query Frame = 1
Query:  256 MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVY 720
            M+ +RFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVV+G+TVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYEN+SKKWIPEL+HYAP VPIVLVGTK DLR+DKQ+ I+HPGA PITTAQGEELKKLIGA  Y
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTAQGEELKKLIGAPAY 155          
BLAST of BQ623865 vs. ExPASy Swiss-Prot
Match: RAC1_LOTJA (Rac-like GTP-binding protein RAC1 OS=Lotus japonicus GN=RAC1 PE=2 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 5.430e-77
Identity = 137/155 (88.39%), Postives = 147/155 (94.84%), Query Frame = 1
Query:  256 MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVY 720
            M+ +RFIKCVTVGDGAVGKTC+LISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSLISKASYENI+KKWIPELRHYAP VPI+LVGTK DLR+DK +L +HPGA PITTAQGEEL+KLIGA  Y
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENIAKKWIPELRHYAPGVPIILVGTKLDLRDDKHFLADHPGAVPITTAQGEELRKLIGAPAY 155          
BLAST of BQ623865 vs. ExPASy Swiss-Prot
Match: RAC9_GOSHI (Rac-like GTP-binding protein RAC9 OS=Gossypium hirsutum GN=RAC9 PE=2 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 7.092e-77
Identity = 138/155 (89.03%), Postives = 147/155 (94.84%), Query Frame = 1
Query:  256 MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVY 720
            MNT+RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLIS+ASYEN+ KKWIPELRHYAP VPIVLVGTK DLR+DKQ+L ++PGA  ITT+QGEELKK+IGA  Y
Sbjct:    1 MNTSRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISRASYENVHKKWIPELRHYAPNVPIVLVGTKLDLRDDKQFLSDNPGAISITTSQGEELKKMIGAVTY 155          
BLAST of BQ623865 vs. ExPASy Swiss-Prot
Match: RAC6_ORYSJ (Rac-like GTP-binding protein 6 OS=Oryza sativa subsp. japonica GN=RAC6 PE=2 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 7.092e-77
Identity = 136/155 (87.74%), Postives = 147/155 (94.84%), Query Frame = 1
Query:  256 MNTARFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENISKKWIPELRHYAPTVPIVLVGTKQDLREDKQYLINHPGATPITTAQGEELKKLIGAAVY 720
            M+ +RFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDG+TVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYEN+SKKWIPEL+HYAP VPI+LVGTK DLR+DKQ+ ++HPGA PITTAQGEEL+K IGA  Y
Sbjct:    1 MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVSKKWIPELKHYAPGVPIILVGTKLDLRDDKQFFVDHPGAVPITTAQGEELRKQIGAPYY 155          
The following BLAST results are available for this feature:
BLAST of BQ623865 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAC2_LOTJA3.287e-8295.48Rac-like GTP-binding protein RAC2 OS=Lotus japonic... [more]
RAC5_ORYSJ1.688e-7889.68Rac-like GTP-binding protein 5 OS=Oryza sativa sub... [more]
RAC13_GOSHI1.688e-7890.97Rac-like GTP-binding protein RAC13 OS=Gossypium hi... [more]
RAC7_ORYSJ2.205e-7890.32Rac-like GTP-binding protein 7 OS=Oryza sativa sub... [more]
RAC4_ARATH2.437e-7790.79Rac-like GTP-binding protein ARAC4 OS=Arabidopsis ... [more]
RAC5_ARATH3.183e-7787.74Rac-like GTP-binding protein ARAC5 OS=Arabidopsis ... [more]
RAC1_ARATH4.158e-7788.39Rac-like GTP-binding protein ARAC1 OS=Arabidopsis ... [more]
RAC1_LOTJA5.430e-7788.39Rac-like GTP-binding protein RAC1 OS=Lotus japonic... [more]
RAC9_GOSHI7.092e-7789.03Rac-like GTP-binding protein RAC9 OS=Gossypium hir... [more]
RAC6_ORYSJ7.092e-7787.74Rac-like GTP-binding protein 6 OS=Oryza sativa sub... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00945 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00945 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623865 ID=BQ623865; Name=BQ623865; organism=Citrus sinensis; type=EST; length=721bp
GCAATTCGGCAATCATGGTAAAGTTAAAGAATCGTAGCTAAAGTGGGTGC
TTTAATATATAGTCACCACCTTATTAAACGCCACCTTCACCCCTCCATTT
CTGTTCAAATTTCGAAACTCAAAGGCATTCAGCTTCTGTATCTTTGGCAT
TAATTCAAGGCTTTCAACATTTTCTTCAAAGTGTATATTGCTATTGATGG
AACAGAATAAAAGAAGGTGATAAGGAAAAAAAGGAGCTAGGATTCATCGA
AAATGATGAACACAGCTAGATTCATCAAATGTGTCACCGTCGGCGATGGA
GCTGTTGGCAAAACCTGCATGCTGATCTCTTATACAAGCAACACATTCCC
AACTGATTATGTGCCGACTGTGTTCGACAACTTCAGTGCTAACGTGGTGG
TTGATGGCAGCACAGTTAATCTCGGTCTATGGGATACTGCTGGACAGGAG
GATTACAACAGGCTTAGGCCTTTGAGTTACAGAGGTGCTGATGTGTTCTT
GTTGGCCTTTTCTCTCATCAGCAAAGCCAGCTATGAAAATATTTCAAAGA
AGTGGATCCCTGAGCTAAGGCATTATGCCCCAACTGTACCCATCGTCCTT
GTCGGAACAAAGCAGGATTTACGCGAGGACAAGCAGTACTTGATTAATCA
TCCAGGTGCTACGCCAATCACAACTGCTCAAGGGGAAGAATTGAAGAAGT
TGATTGGTGCTGCTGTTTACA
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