BQ623881

Overview
NameBQ623881
Unique NameBQ623881
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length469
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623881 vs. ExPASy Swiss-Prot
Match: LSM5_PONAB (U6 snRNA-associated Sm-like protein LSm5 OS=Pongo abelii GN=LSM5 PE=3 SV=3)

HSP 1 Score: 132.88 bits (333), Expect = 6.852e-31
Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 1
Query:   61 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG 297
            NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRITKLDQILLNGNNI +LVPGG
Sbjct:    8 NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGG 86          
BLAST of BQ623881 vs. ExPASy Swiss-Prot
Match: LSM5_MOUSE (U6 snRNA-associated Sm-like protein LSm5 OS=Mus musculus GN=Lsm5 PE=3 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 6.852e-31
Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 1
Query:   61 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG 297
            NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRITKLDQILLNGNNI +LVPGG
Sbjct:    8 NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGG 86          
BLAST of BQ623881 vs. ExPASy Swiss-Prot
Match: LSM5_HUMAN (U6 snRNA-associated Sm-like protein LSm5 OS=Homo sapiens GN=LSM5 PE=1 SV=3)

HSP 1 Score: 132.88 bits (333), Expect = 6.852e-31
Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 1
Query:   61 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG 297
            NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRITKLDQILLNGNNI +LVPGG
Sbjct:    8 NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGG 86          
BLAST of BQ623881 vs. ExPASy Swiss-Prot
Match: LSM5_BOVIN (U6 snRNA-associated Sm-like protein LSm5 OS=Bos taurus GN=LSM5 PE=3 SV=3)

HSP 1 Score: 132.88 bits (333), Expect = 6.852e-31
Identity = 63/79 (79.75%), Postives = 72/79 (91.14%), Query Frame = 1
Query:   61 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG 297
            NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRITKLDQILLNGNNI +LVPGG
Sbjct:    8 NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGG 86          
BLAST of BQ623881 vs. ExPASy Swiss-Prot
Match: LSM5_DICDI (Probable U6 snRNA-associated Sm-like protein LSm5 OS=Dictyostelium discoideum GN=lsm5 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.479e-25
Identity = 53/77 (68.83%), Postives = 63/77 (81.82%), Query Frame = 1
Query:   67 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG 297
            SQLLP ELI++CIGS+IW+ MK DKE VGTL GFD YVN+ L+DVTEYE T EG +  KLD ILLNGN++ +LVPGG
Sbjct:   14 SQLLPLELIEKCIGSRIWIAMKNDKEFVGTLLGFDAYVNIFLKDVTEYEYTPEGLKTVKLDNILLNGNHVCLLVPGG 90          
BLAST of BQ623881 vs. ExPASy Swiss-Prot
Match: LSM5_SCHPO (U6 snRNA-associated Sm-like protein LSm5 OS=Schizosaccharomyces pombe GN=lsm5 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.026e-18
Identity = 45/78 (57.69%), Postives = 59/78 (75.64%), Query Frame = 1
Query:   73 LLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPD 306
            +LP ELID+CIGS +WVIMK ++E  GTL GFD YVN+VL+DVTEY+ T  G    K  ++LLNGN + +L+PGG P+
Sbjct:    5 ILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYD-TVTG-VTEKHSEMLLNGNGMCMLIPGGKPE 80          
BLAST of BQ623881 vs. ExPASy Swiss-Prot
Match: LSM5_YEAST (U6 snRNA-associated Sm-like protein LSm5 OS=Saccharomyces cerevisiae GN=LSM5 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 4.933e-13
Identity = 39/85 (45.88%), Postives = 57/85 (67.06%), Query Frame = 1
Query:   70 QLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR-RITKLDQ----ILLNGNNIAILVPGGSPDP 309
            ++LP E+ID+ I  K+ ++++ ++E  GTL GFD +VN++LED  E+ I  E   R  K+ Q    +LL+GNNIAILVPGG   P
Sbjct:    5 EILPLEVIDKTINQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVEWLIDPEDESRNEKVMQHHGRMLLSGNNIAILVPGGKKTP 89          
The following BLAST results are available for this feature:
BLAST of BQ623881 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
LSM5_PONAB6.852e-3179.75U6 snRNA-associated Sm-like protein LSm5 OS=Pongo ... [more]
LSM5_MOUSE6.852e-3179.75U6 snRNA-associated Sm-like protein LSm5 OS=Mus mu... [more]
LSM5_HUMAN6.852e-3179.75U6 snRNA-associated Sm-like protein LSm5 OS=Homo s... [more]
LSM5_BOVIN6.852e-3179.75U6 snRNA-associated Sm-like protein LSm5 OS=Bos ta... [more]
LSM5_DICDI1.479e-2568.83Probable U6 snRNA-associated Sm-like protein LSm5 ... [more]
LSM5_SCHPO1.026e-1857.69U6 snRNA-associated Sm-like protein LSm5 OS=Schizo... [more]
LSM5_YEAST4.933e-1345.88U6 snRNA-associated Sm-like protein LSm5 OS=Saccha... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00961 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00961 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623881 ID=BQ623881; Name=BQ623881; organism=Citrus sinensis; type=EST; length=469bp
AAAGGCAAAAGCAAACCAAAAGTCCTCCAATCGCTCTCGCTTACTCACGG
CATGGCTCACAATCCTTCGCAGCTCCTCCCATCAGAGCTAATAGACAGAT
GCATAGGGTCCAAAATTTGGGTGATAATGAAAGGAGACAAGGAGCTTGTT
GGCACTCTTAAAGGATTTGACGTCTACGTCAACATGGTCCTTGAAGACGT
CACCGAATATGAAATCACTGCTGAAGGTAGACGGATTACAAAGCTTGATC
AGATTTTGCTCAACGGAAACAACATTGCTATACTTGTTCCCGGTGGCTCA
CCTGATCCAGAATAAGGGTGTGGACTCTACCTCAGTTTTAACGAGGTCTA
GTCCACTGAGATCTGTTTTATTGTCACCAATTTTACTTTAAAATTCTGTA
GGTGACATGCCTCTCGGCCTGGAGTATTAAATTAGGATGGATTATGTTTC
ACCTAACTGAAAATGCTAT
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