BQ623882
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of BQ623882 vs. ExPASy Swiss-Prot
Match: RD23C_ARATH (Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana GN=RAD23-3 PE=2 SV=2) HSP 1 Score: 268.085 bits (684), Expect = 2.384e-71 Identity = 134/156 (85.90%), Postives = 144/156 (92.31%), Query Frame = 3 Query: 39 SGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG--EGNVLGQLASAM--PQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 494 SGPNANPLDLFPQGLPN+G N GAGTLDFLRNSQQFQALR MVQANPQ+LQPMLQELGKQNP+LMRLIQ+HQ DFLRLINEPVEGG GN+LGQ+A+ M PQA+ VT EEREAIERLEAMGF+RALVLEVFFACNKNEELAANYLLDHMHEFE+ Sbjct: 264 SGPNANPLDLFPQGLPNVGGNPGAGTLDFLRNSQQFQALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLINEPVEGGGESGNLLGQMAAGMPQPQAIQVTHEEREAIERLEAMGFERALVLEVFFACNKNEELAANYLLDHMHEFEE 419
BLAST of BQ623882 vs. ExPASy Swiss-Prot
Match: RD23D_ARATH (Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana GN=RAD23-4 PE=2 SV=2) HSP 1 Score: 263.462 bits (672), Expect = 5.871e-70 Identity = 132/153 (86.27%), Postives = 139/153 (90.85%), Query Frame = 3 Query: 36 TSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 494 T GPNANPL+LFPQG+P + AGAG LDFLRNSQQFQALR MVQANPQILQPMLQELGKQNP L+RLIQEHQ DFLRLINEPVE GE NV+ QL +AMPQAVTVTPEEREAIERLE MGFDRA+VLEVFFACNKNEELAANYLLDHMHEFED Sbjct: 226 TGGPNANPLNLFPQGMPAADAGAGAGNLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVE-GEENVMEQLEAAMPQAVTVTPEEREAIERLEGMGFDRAMVLEVFFACNKNEELAANYLLDHMHEFED 377
BLAST of BQ623882 vs. ExPASy Swiss-Prot
Match: RAD23_ORYSJ (Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 SV=2) HSP 1 Score: 218.394 bits (555), Expect = 2.166e-56 Identity = 109/155 (70.32%), Postives = 130/155 (83.87%), Query Frame = 3 Query: 36 TSGPNANPLDLFPQGLPNMGSNA-GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG-EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 494 +SGPNA+PLDLFPQ LPN ++A G G LD LRN+ QF+ L ++VQANPQILQP+LQELGKQNP +++LIQE+Q +FL LINEP EG E N+L Q AMPQ + VTPEE EAI RLEAMGFDRALVL+VFFACNK+E+LAANYLLDHM+EF+D Sbjct: 234 SSGPNASPLDLFPQALPNASTDAAGLGNLDALRNNAQFRTLLSLVQANPQILQPLLQELGKQNPQILQLIQENQAEFLHLINEPAEGDDEENLLDQFPEAMPQTIAVTPEENEAILRLEAMGFDRALVLDVFFACNKDEQLAANYLLDHMNEFDD 388
BLAST of BQ623882 vs. ExPASy Swiss-Prot
Match: RD23A_ARATH (Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana GN=RAD23-1 PE=2 SV=3) HSP 1 Score: 204.142 bits (518), Expect = 4.227e-52 Identity = 100/155 (64.52%), Postives = 123/155 (79.35%), Query Frame = 3 Query: 36 TSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG--GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 494 + GPN++PLDLFPQ + GTL+FLRN+ QFQ LRTMV +NPQILQPMLQELGKQNP L+RLIQE+Q +FL+L+NEP EG GEG++ Q MP A+ VTP E+EAI+RLEAMGFDRALV+E F AC++NEELAANYLL++ +FED Sbjct: 217 SGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNNDQFQQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFED 371
BLAST of BQ623882 vs. ExPASy Swiss-Prot
Match: RD23B_ARATH (Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana GN=RAD23-2 PE=2 SV=2) HSP 1 Score: 199.904 bits (507), Expect = 7.972e-51 Identity = 97/155 (62.58%), Postives = 123/155 (79.35%), Query Frame = 3 Query: 36 TSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV--LGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 494 + GPN++PLDLFPQ + + GTL+FLR + QFQ LR+MV +NPQILQPMLQELGKQNP L+RLIQE+Q +FL+L+NEP EG +G+V Q MP +V VTPEE+E+IERLEAMGFDRA+V+E F +C++NEELAANYLL+H +FED Sbjct: 214 SGGPNSSPLDLFPQEAVSDAAGGDLGTLEFLRGNDQFQQLRSMVNSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLLNEPYEGSDGDVDIFDQPDQEMPHSVNVTPEEQESIERLEAMGFDRAIVIEAFLSCDRNEELAANYLLEHSADFED 368
BLAST of BQ623882 vs. ExPASy Swiss-Prot
Match: RD23B_HUMAN (UV excision repair protein RAD23 homolog B OS=Homo sapiens GN=RAD23B PE=1 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 1.463e-28 Identity = 60/134 (44.78%), Postives = 94/134 (70.15%), Query Frame = 3 Query: 96 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE--GGEGNVLGQLASAMPQA-------VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 470 +++G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+ GG+G G + + +A + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL Sbjct: 269 TSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 402
BLAST of BQ623882 vs. ExPASy Swiss-Prot
Match: RD23B_BOVIN (UV excision repair protein RAD23 homolog B OS=Bos taurus GN=RAD23B PE=2 SV=1) HSP 1 Score: 125.946 bits (315), Expect = 1.463e-28 Identity = 60/134 (44.78%), Postives = 94/134 (70.15%), Query Frame = 3 Query: 96 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE--GGEGNVLGQLASAMPQA-------VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 470 +++G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+ GG+G G + + +A + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL Sbjct: 268 TSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGGGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 401
BLAST of BQ623882 vs. ExPASy Swiss-Prot
Match: RD23B_RAT (UV excision repair protein RAD23 homolog B OS=Rattus norvegicus GN=Rad23b PE=1 SV=1) HSP 1 Score: 125.176 bits (313), Expect = 2.495e-28 Identity = 59/140 (42.14%), Postives = 90/140 (64.29%), Query Frame = 3 Query: 96 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE---------------GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 470 + +G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+ GG G + + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL Sbjct: 269 TTSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 408
BLAST of BQ623882 vs. ExPASy Swiss-Prot
Match: RD23B_MOUSE (UV excision repair protein RAD23 homolog B OS=Mus musculus GN=Rad23b PE=1 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 3.259e-28 Identity = 59/141 (41.84%), Postives = 90/141 (63.83%), Query Frame = 3 Query: 96 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE----------------GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 470 + +G L+FLRN QFQ +R ++Q NP +L +LQ++G++NP L++ I +HQ F++++NEPV+ GG G + + S + VTP+E+EAIERL+A+GF LV++ +FAC KNE LAAN+LL Sbjct: 269 TTSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 409
BLAST of BQ623882 vs. ExPASy Swiss-Prot
Match: RD23A_BOVIN (UV excision repair protein RAD23 homolog A OS=Bos taurus GN=RAD23A PE=2 SV=1) HSP 1 Score: 122.479 bits (306), Expect = 1.617e-27 Identity = 62/140 (44.29%), Postives = 92/140 (65.71%), Query Frame = 3 Query: 96 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 491 + AG L+FLR+ QFQ +R ++Q NP +L +LQ+LG++NP L++ I HQ F++++NEP + EG V G + PQ + VTP+E+EAIERL+A+GF +LV++ +FAC KNE LAAN+LL + E Sbjct: 224 TEAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELVDISDVEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE 362 The following BLAST results are available for this feature:
BLAST of BQ623882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 15
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >BQ623882 ID=BQ623882; Name=BQ623882; organism=Citrus sinensis; type=EST; length=597bpback to top |