BQ623882

Overview
NameBQ623882
Unique NameBQ623882
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length597
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5764 contig Csv1_Contig5764:594..1188. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623882 vs. ExPASy Swiss-Prot
Match: RD23C_ARATH (Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana GN=RAD23-3 PE=2 SV=2)

HSP 1 Score: 268.085 bits (684), Expect = 2.384e-71
Identity = 134/156 (85.90%), Postives = 144/156 (92.31%), Query Frame = 3
Query:   39 SGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG--EGNVLGQLASAM--PQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 494
            SGPNANPLDLFPQGLPN+G N GAGTLDFLRNSQQFQALR MVQANPQ+LQPMLQELGKQNP+LMRLIQ+HQ DFLRLINEPVEGG   GN+LGQ+A+ M  PQA+ VT EEREAIERLEAMGF+RALVLEVFFACNKNEELAANYLLDHMHEFE+
Sbjct:  264 SGPNANPLDLFPQGLPNVGGNPGAGTLDFLRNSQQFQALRAMVQANPQVLQPMLQELGKQNPNLMRLIQDHQADFLRLINEPVEGGGESGNLLGQMAAGMPQPQAIQVTHEEREAIERLEAMGFERALVLEVFFACNKNEELAANYLLDHMHEFEE 419          
BLAST of BQ623882 vs. ExPASy Swiss-Prot
Match: RD23D_ARATH (Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana GN=RAD23-4 PE=2 SV=2)

HSP 1 Score: 263.462 bits (672), Expect = 5.871e-70
Identity = 132/153 (86.27%), Postives = 139/153 (90.85%), Query Frame = 3
Query:   36 TSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 494
            T GPNANPL+LFPQG+P   + AGAG LDFLRNSQQFQALR MVQANPQILQPMLQELGKQNP L+RLIQEHQ DFLRLINEPVE GE NV+ QL +AMPQAVTVTPEEREAIERLE MGFDRA+VLEVFFACNKNEELAANYLLDHMHEFED
Sbjct:  226 TGGPNANPLNLFPQGMPAADAGAGAGNLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPQLVRLIQEHQADFLRLINEPVE-GEENVMEQLEAAMPQAVTVTPEEREAIERLEGMGFDRAMVLEVFFACNKNEELAANYLLDHMHEFED 377          
BLAST of BQ623882 vs. ExPASy Swiss-Prot
Match: RAD23_ORYSJ (Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 SV=2)

HSP 1 Score: 218.394 bits (555), Expect = 2.166e-56
Identity = 109/155 (70.32%), Postives = 130/155 (83.87%), Query Frame = 3
Query:   36 TSGPNANPLDLFPQGLPNMGSNA-GAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGG-EGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 494
            +SGPNA+PLDLFPQ LPN  ++A G G LD LRN+ QF+ L ++VQANPQILQP+LQELGKQNP +++LIQE+Q +FL LINEP EG  E N+L Q   AMPQ + VTPEE EAI RLEAMGFDRALVL+VFFACNK+E+LAANYLLDHM+EF+D
Sbjct:  234 SSGPNASPLDLFPQALPNASTDAAGLGNLDALRNNAQFRTLLSLVQANPQILQPLLQELGKQNPQILQLIQENQAEFLHLINEPAEGDDEENLLDQFPEAMPQTIAVTPEENEAILRLEAMGFDRALVLDVFFACNKDEQLAANYLLDHMNEFDD 388          
BLAST of BQ623882 vs. ExPASy Swiss-Prot
Match: RD23A_ARATH (Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana GN=RAD23-1 PE=2 SV=3)

HSP 1 Score: 204.142 bits (518), Expect = 4.227e-52
Identity = 100/155 (64.52%), Postives = 123/155 (79.35%), Query Frame = 3
Query:   36 TSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEG--GEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 494
            + GPN++PLDLFPQ       +   GTL+FLRN+ QFQ LRTMV +NPQILQPMLQELGKQNP L+RLIQE+Q +FL+L+NEP EG  GEG++  Q    MP A+ VTP E+EAI+RLEAMGFDRALV+E F AC++NEELAANYLL++  +FED
Sbjct:  217 SGGPNSSPLDLFPQETVAAAGSGDLGTLEFLRNNDQFQQLRTMVHSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLVNEPYEGSDGEGDMFDQPEQEMPHAINVTPAEQEAIQRLEAMGFDRALVIEAFLACDRNEELAANYLLENSGDFED 371          
BLAST of BQ623882 vs. ExPASy Swiss-Prot
Match: RD23B_ARATH (Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana GN=RAD23-2 PE=2 SV=2)

HSP 1 Score: 199.904 bits (507), Expect = 7.972e-51
Identity = 97/155 (62.58%), Postives = 123/155 (79.35%), Query Frame = 3
Query:   36 TSGPNANPLDLFPQGLPNMGSNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNV--LGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFED 494
            + GPN++PLDLFPQ   +  +    GTL+FLR + QFQ LR+MV +NPQILQPMLQELGKQNP L+RLIQE+Q +FL+L+NEP EG +G+V    Q    MP +V VTPEE+E+IERLEAMGFDRA+V+E F +C++NEELAANYLL+H  +FED
Sbjct:  214 SGGPNSSPLDLFPQEAVSDAAGGDLGTLEFLRGNDQFQQLRSMVNSNPQILQPMLQELGKQNPQLLRLIQENQAEFLQLLNEPYEGSDGDVDIFDQPDQEMPHSVNVTPEEQESIERLEAMGFDRAIVIEAFLSCDRNEELAANYLLEHSADFED 368          
BLAST of BQ623882 vs. ExPASy Swiss-Prot
Match: RD23B_HUMAN (UV excision repair protein RAD23 homolog B OS=Homo sapiens GN=RAD23B PE=1 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.463e-28
Identity = 60/134 (44.78%), Postives = 94/134 (70.15%), Query Frame = 3
Query:   96 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE--GGEGNVLGQLASAMPQA-------VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 470
            +++G   L+FLRN  QFQ +R ++Q NP +L  +LQ++G++NP L++ I +HQ  F++++NEPV+  GG+G   G  +  + +A       + VTP+E+EAIERL+A+GF   LV++ +FAC KNE LAAN+LL
Sbjct:  269 TSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 402          
BLAST of BQ623882 vs. ExPASy Swiss-Prot
Match: RD23B_BOVIN (UV excision repair protein RAD23 homolog B OS=Bos taurus GN=RAD23B PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.463e-28
Identity = 60/134 (44.78%), Postives = 94/134 (70.15%), Query Frame = 3
Query:   96 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE--GGEGNVLGQLASAMPQA-------VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 470
            +++G   L+FLRN  QFQ +R ++Q NP +L  +LQ++G++NP L++ I +HQ  F++++NEPV+  GG+G   G  +  + +A       + VTP+E+EAIERL+A+GF   LV++ +FAC KNE LAAN+LL
Sbjct:  268 TSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGGGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 401          
BLAST of BQ623882 vs. ExPASy Swiss-Prot
Match: RD23B_RAT (UV excision repair protein RAD23 homolog B OS=Rattus norvegicus GN=Rad23b PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.495e-28
Identity = 59/140 (42.14%), Postives = 90/140 (64.29%), Query Frame = 3
Query:   96 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE---------------GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 470
            + +G   L+FLRN  QFQ +R ++Q NP +L  +LQ++G++NP L++ I +HQ  F++++NEPV+               GG G  + +  S     + VTP+E+EAIERL+A+GF   LV++ +FAC KNE LAAN+LL
Sbjct:  269 TTSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 408          
BLAST of BQ623882 vs. ExPASy Swiss-Prot
Match: RD23B_MOUSE (UV excision repair protein RAD23 homolog B OS=Mus musculus GN=Rad23b PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.259e-28
Identity = 59/141 (41.84%), Postives = 90/141 (63.83%), Query Frame = 3
Query:   96 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVE----------------GGEGNVLGQLASAMPQAVTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLL 470
            + +G   L+FLRN  QFQ +R ++Q NP +L  +LQ++G++NP L++ I +HQ  F++++NEPV+                GG G  + +  S     + VTP+E+EAIERL+A+GF   LV++ +FAC KNE LAAN+LL
Sbjct:  269 TTSGGHPLEFLRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGGGGGGGGGGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL 409          
BLAST of BQ623882 vs. ExPASy Swiss-Prot
Match: RD23A_BOVIN (UV excision repair protein RAD23 homolog A OS=Bos taurus GN=RAD23A PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.617e-27
Identity = 62/140 (44.29%), Postives = 92/140 (65.71%), Query Frame = 3
Query:   96 SNAGAGTLDFLRNSQQFQALRTMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEP------VEGGEGNVLGQLASAMPQA--VTVTPEEREAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFE 491
            + AG   L+FLR+  QFQ +R ++Q NP +L  +LQ+LG++NP L++ I  HQ  F++++NEP      +   EG V G +    PQ   + VTP+E+EAIERL+A+GF  +LV++ +FAC KNE LAAN+LL    + E
Sbjct:  224 TEAGENPLEFLRDQPQFQNMRQVIQQNPALLPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELVDISDVEGEV-GAIGEEAPQMNYIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE 362          
The following BLAST results are available for this feature:
BLAST of BQ623882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RD23C_ARATH2.384e-7185.90Putative DNA repair protein RAD23-3 OS=Arabidopsis... [more]
RD23D_ARATH5.871e-7086.27Putative DNA repair protein RAD23-4 OS=Arabidopsis... [more]
RAD23_ORYSJ2.166e-5670.32Probable DNA repair protein RAD23 OS=Oryza sativa ... [more]
RD23A_ARATH4.227e-5264.52Putative DNA repair protein RAD23-1 OS=Arabidopsis... [more]
RD23B_ARATH7.972e-5162.58Putative DNA repair protein RAD23-2 OS=Arabidopsis... [more]
RD23B_HUMAN1.463e-2844.78UV excision repair protein RAD23 homolog B OS=Homo... [more]
RD23B_BOVIN1.463e-2844.78UV excision repair protein RAD23 homolog B OS=Bos ... [more]
RD23B_RAT2.495e-2842.14UV excision repair protein RAD23 homolog B OS=Ratt... [more]
RD23B_MOUSE3.259e-2841.84UV excision repair protein RAD23 homolog B OS=Mus ... [more]
RD23A_BOVIN1.617e-2744.29UV excision repair protein RAD23 homolog A OS=Bos ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00962 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00962 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623882 ID=BQ623882; Name=BQ623882; organism=Citrus sinensis; type=EST; length=597bp
AAACTCAAGCTCAACAACCTGCAGCACCTGCACCTACCAGTGGTCCAAAT
GCAAACCCGCTGGATCTTTTTCCACAGGGCCTTCCAAATATGGGTTCAAA
TGCCGGTGCAGGTACCTTGGATTTCCTGCGCAACAGTCAACAGTTCCAAG
CATTGCGCACTATGGTGCAAGCAAATCCCCAAATTTTGCAGCCTATGCTT
CAGGAACTTGGGAAGCAAAATCCACACCTGATGCGACTCATTCAAGAGCA
TCAGACTGACTTCTTGCGTTTGATAAATGAGCCCGTTGAAGGAGGAGAGG
GGAATGTACTGGGTCAGTTGGCCTCAGCAATGCCACAGGCTGTGACTGTA
ACCCCTGAGGAGAGAGAAGCTATCGAGCGTCTTGAAGCAATGGGCTTTGA
TCGTGCCCTAGTGTTGGAAGTGTTCTTTGCTTGCAACAAGAATGAGGAGT
TGGCAGCCAACTATCTCTTAGATCACATGCATGAGTTTGAGGATTGATTG
AAGTCACCCTTTTCTTGTTCTCCCCCTTTTTTTTTTTTTTTTTTCCTTTT
CCATGTTGGGTGCATATACTCTTGGGGGTAAACAGGGTCTTATACCA
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