BQ623891

Overview
NameBQ623891
Unique NameBQ623891
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length583
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2086 contig Csv1_Contig2086:164..746. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623891 vs. ExPASy Swiss-Prot
Match: PSAG_ARATH (Photosystem I reaction center subunit V, chloroplastic OS=Arabidopsis thaliana GN=PSAG PE=1 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 3.406e-59
Identity = 114/157 (72.61%), Postives = 133/157 (84.71%), Query Frame = 2
Query:   41 ASSSLFTPSTITVRKHQISPSTISFQGLRPLNTRAKTS-LPKLATSAKRNSFGGIKAELSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFFG 508
            ++S+L +P+T +      +P++ISF GLRPL     +S LPKL+T+ +++S   ++AELS  +VISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNG THFEAGD RAKEYVSLLKSNDP+GFNIVDVLAWGSIGHIVAYYILATSSNGYDP FFG
Sbjct:    4 SASALLSPTTFSTAISHKNPNSISFHGLRPLRLGGSSSALPKLSTTGRKSSSAVVRAELSPSIVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGKTHFEAGDDRAKEYVSLLKSNDPIGFNIVDVLAWGSIGHIVAYYILATSSNGYDPSFFG 160          
BLAST of BQ623891 vs. ExPASy Swiss-Prot
Match: PSAG_SPIOL (Photosystem I reaction center subunit V, chloroplastic OS=Spinacia oleracea GN=PSAG PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 7.118e-49
Identity = 103/134 (76.87%), Postives = 112/134 (83.58%), Query Frame = 2
Query:  110 SFQGLRPL--NTRAKTSLPKLATSAKRNSFGGIKAELSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFF 505
            SF GLRPL  N  +  S   L+ S+ R S    +AELS  LVISLSTGLSLFLGRFVFFNFQREN+AKQ +PEQNG++HFEAGD RAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILAT+SNGYDP FF
Sbjct:   36 SFSGLRPLKLNISSNNSSSSLSMSSARRSMT-CRAELSPSLVISLSTGLSLFLGRFVFFNFQRENMAKQ-VPEQNGMSHFEAGDTRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATASNGYDPSFF 167          
BLAST of BQ623891 vs. ExPASy Swiss-Prot
Match: PSAG_HORVU (Photosystem I reaction center subunit V, chloroplastic OS=Hordeum vulgare GN=PSAG PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 5.837e-43
Identity = 92/139 (66.19%), Postives = 108/139 (77.70%), Query Frame = 2
Query:   92 ISPSTISFQGLRPLNTRAKTSLPKLATSAKRNSFGGIKAELSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDPKFFG 508
            +SP  ++   L P + RA  S   ++  A+R+     +A L   +VISLSTGLSL +GRFVFFNFQRENVAKQ +PEQNG THFEAGD RAKE+  +LKSNDPVGFN+VDVLAWGSIGHIVAYYILAT+SNGYDP FFG
Sbjct:    9 LSPPAVAGLRLAP-SPRAAASFRGVSPPARRSV--AARAALEPSVVISLSTGLSLVMGRFVFFNFQRENVAKQ-VPEQNGKTHFEAGDERAKEFAGILKSNDPVGFNLVDVLAWGSIGHIVAYYILATTSNGYDPPFFG 143          
BLAST of BQ623891 vs. ExPASy Swiss-Prot
Match: PSAG_TORRU (Photosystem I reaction center subunit V, chloroplastic OS=Tortula ruralis GN=PSAG PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 9.688e-22
Identity = 49/93 (52.69%), Postives = 65/93 (69.89%), Query Frame = 2
Query:  215 STPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYD 493
            +T  +IS ST   L LGRFVF  FQR  V++ GLPEQNGV          + + S+LK+NDP GF +VDVLAWG++GH V ++ILAT++NGY+
Sbjct:   17 NTSFIISASTAALLALGRFVFLPFQRSMVSRHGLPEQNGVPTTRRVTAVRRRWWSMLKTNDPAGFTLVDVLAWGALGHAVGFFILATATNGYN 109          
BLAST of BQ623891 vs. ExPASy Swiss-Prot
Match: PSAG_PEA (Photosystem I reaction center subunit V (Fragment) OS=Pisum sativum GN=PSAG PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.831e-12
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 2
Query:  209 ELSTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ 325
            EL+  LVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ
Sbjct:    1 ELNPSLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ 39          
BLAST of BQ623891 vs. ExPASy Swiss-Prot
Match: PSAG_CHLRE (Photosystem I reaction center subunit V, chloroplastic OS=Chlamydomonas reinhardtii GN=PSAG PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.088e-12
Identity = 39/95 (41.05%), Postives = 56/95 (58.95%), Query Frame = 2
Query:  203 KAELSTPLVISLSTGLSLFLGRFVFFNFQRE--NVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSS 481
            KA L   +VIS ST   L +GRFVF  +QR   N      P+  G T+F+  D++     ++  +NDP GFNI+DV  WG++GH V + +LA +S
Sbjct:   29 KAALDPQIVISGSTAAFLAIGRFVFLGYQRREANFDSTVGPKTTGATYFD--DLQKNS--TIFATNDPAGFNIIDVAGWGALGHAVGFAVLAINS 119          
The following BLAST results are available for this feature:
BLAST of BQ623891 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PSAG_ARATH3.406e-5972.61Photosystem I reaction center subunit V, chloropla... [more]
PSAG_SPIOL7.118e-4976.87Photosystem I reaction center subunit V, chloropla... [more]
PSAG_HORVU5.837e-4366.19Photosystem I reaction center subunit V, chloropla... [more]
PSAG_TORRU9.688e-2252.69Photosystem I reaction center subunit V, chloropla... [more]
PSAG_PEA1.831e-1292.31Photosystem I reaction center subunit V (Fragment)... [more]
PSAG_CHLRE9.088e-1241.05Photosystem I reaction center subunit V, chloropla... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00971 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00971 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623891 ID=BQ623891; Name=BQ623891; organism=Citrus sinensis; type=EST; length=583bp
GGAAAAGAAGGAAAAAGAGGGGGAAAAAAGAAAAATGGCAGCCTCATCCT
CCTTGTTCACACCCTCCACCATCACCGTCCGAAAACACCAAATTTCACCC
TCCACCATCTCATTCCAAGGCCTAAGACCCCTCAACACCAGGGCCAAAAC
CTCCCTCCCCAAGCTCGCCACCTCCGCCAAAAGAAACAGCTTCGGCGGCA
TTAAAGCTGAGCTGAGCACACCACTTGTCATCAGCCTCAGCACTGGCCTC
TCCTTGTTCTTGGGCAGGTTCGTCTTCTTCAACTTCCAAAGAGAGAACGT
GGCCAAACAAGGCTTGCCCGAGCAGAATGGAGTCACCCACTTTGAAGCCG
GTGATGTTCGTGCCAAGGAATATGTTAGCCTCCTCAAATCCAACGACCCA
GTTGGCTTTAACATTGTTGATGTTCTTGCTTGGGGTTCCATTGGCCATAT
TGTCGCTTACTACATCTTGGCCACCTCCAGCAACGGCTATGATCCCAAGT
TCTTTGGGTGATTTTGTTATTTGGACTGGCTTCTTTTGTCTCTTTTAGTT
TCTTAATTTCTCAAGTGTTGCGCTTTGTATAGT
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