BQ623904

Overview
NameBQ623904
Unique NameBQ623904
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length497
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of BQ623904 vs. ExPASy Swiss-Prot
Match: 5NG4_PINTA (Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 1.876e-56
Identity = 105/171 (61.40%), Postives = 138/171 (80.70%), Query Frame = 1 
Query:    1 IQNSVPAITFLMAAIFRIEKVRLDRKDGIAKVVGTLFCVAGATVITLYKGPTIYSPAPPLNQI-QPN-SLTSTIFLSLG----DAKGKNWTLGCVYLIGHCLSWSGWLVMQAPVLKKYPARLSVTAYTCFFGLIQFMIIAAIFERNLDAWIFHNGGEVFSILYAGVVASGI 495
            IQNSVPAITF+MAA  R+EKV + R+DG+AK++GT+ CV+GAT+ITLYKGP       P+  I +PN  +T++ F +       AK +NWTLGC+YL+G+CL+WSGW+V+QAPVLK+YPARLSVT++TCFFG+IQF+IIAA FE +L+ W  H+GGE+F+ILYAG VASGI
Sbjct:  115 IQNSVPAITFIMAAALRLEKVHISRRDGLAKIIGTVACVSGATIITLYKGP-------PITHIWRPNLEVTASYFKAFQGNDLSAKSENWTLGCIYLLGNCLAWSGWIVLQAPVLKRYPARLSVTSFTCFFGVIQFLIIAAFFETDLEHWKIHSGGELFTILYAGFVASGI 278
The following BLAST results are available for this feature:
BLAST of BQ623904 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
5NG4_PINTA1.876e-5661.40Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00984 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00984 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623904 ID=BQ623904; Name=BQ623904; organism=Citrus sinensis; type=EST; length=497bp
ATCCAGAATTCCGTCCCCGCCATCACCTTTCTCATGGCGGCCATATTCAG
GATCGAGAAAGTGAGGCTAGACCGAAAAGACGGGATTGCAAAAGTAGTAG
GAACTCTATTCTGTGTGGCCGGGGCCACGGTTATAACCTTATACAAGGGT
CCAACAATATACAGCCCAGCTCCCCCACTGAACCAAATCCAACCCAATTC
ACTAACATCAACAATATTCCTTTCATTGGGAGACGCAAAGGGCAAGAACT
GGACCCTGGGTTGTGTCTATCTGATTGGCCACTGCCTTTCCTGGTCCGGC
TGGCTTGTGATGCAAGCACCGGTACTCAAGAAGTACCCGGCTCGCCTTTC
AGTCACCGCTTACACATGCTTCTTTGGACTCATTCAGTTCATGATCATCG
CTGCCATCTTTGAGAGAAACCTTGATGCATGGATTTTCCACAATGGTGGA
GAAGTCTTCTCCATCCTCTATGCAGGAGTGGTGGCATCAGGGATAGC
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