BQ623914

Overview
NameBQ623914
Unique NameBQ623914
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length593
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig43 contig Csv1_Contig43:1..593. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of BQ623914 vs. ExPASy Swiss-Prot
Match: S35C2_MOUSE (Solute carrier family 35 member C2 OS=Mus musculus GN=Slc35c2 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 7.972e-11
Identity = 45/151 (29.80%), Postives = 77/151 (50.99%), Query Frame = 2 
Query:  167 YGEIHFNIVGTLYQVTGIVAEALRLVLTQVLLQKKGLTL-NPITSLYYIAPCSFVFLFVPWYLLEKPMMEVSQIQFNF-------WIFFS---NALCALALNFSIFLVIGRTGAVTIRVAGVLKDWILIALSTVIFAEATITGLNIIGYAI 586
            Y    FN+ G    +       +R  LTQ+LLQK  L L NPI +++++ P  F+ LF  + + E   +  S+  F F       W+  S     + A  L FS FL++ RT ++T+ +AG+ K+   + L+  +  +  I+ LN +G+A+
Sbjct:  156 YKSTQFNVEGFALVLGASFIGGIRWTLTQILLQKADLGLQNPIDTMFHLQPLMFLGLFPLFAIFEGLHLSTSEKIFRFQDTGLLLWVLGSLLLGGILAFGLGFSEFLLVSRTSSLTLSIAGIFKEVCTLLLAAHLLGD-QISLLNWLGFAL 305
The following BLAST results are available for this feature:
BLAST of BQ623914 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
S35C2_MOUSE7.972e-1129.80Solute carrier family 35 member C2 OS=Mus musculus... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_00994 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00994 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623914 ID=BQ623914; Name=BQ623914; organism=Citrus sinensis; type=EST; length=593bp
GGTAACACTGCTTACTTGCACATATCGGTAGCCTTCATCCAGATGCTCAA
AGCTCTAATGCCAGTGGCAACATTTTTCATGGCAGTTTTATGCGGCACTG
ATAAAGCAAGATTGGATGTGTTCTTGAACATGGTGCGTGGTCAGTGTTGG
AGTCGTCATTTCCTCATATGGGGAAATTCATTTTAATATAGTCGGCACGC
TCTACCAGGTTACTGGCATCGTTGCAGAAGCTCTTAGGCTGGTCTTAACG
CAAGTCCTTCTGCAAAAGAAAGGCTTGACTCTAAATCCTATTACCAGCTT
GTATTACATAGCTCCATGCAGTTTTGTGTTTCTATTTGTGCCTTGGTACT
TGTTGGAGAAGCCTATGATGGAAGTTTCACAGATTCAGTTCAATTTCTGG
ATCTTCTTCTCCAATGCTCTCTGTGCTTTGGCCTTGAACTTCTCCATATT
CTTAGTGATTGGAAGAACTGGAGCTGTCACTATAAGAGTTGCTGGTGTTC
TAAAAGACTGGATACTCATAGCCCTTTCAACTGTTATATTTGCAGAGGCT
ACAATAACTGGGCTGAACATAATTGGCTATGCAATAGCTTATG
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