BQ623931

Overview
NameBQ623931
Unique NameBQ623931
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length623
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11023 contig Csv1_Contig11023:116..738. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623931 vs. ExPASy Swiss-Prot
Match: PSB1_PETHY (Proteasome subunit beta type-1 OS=Petunia hybrida GN=PBF1 PE=2 SV=1)

HSP 1 Score: 372.474 bits (955), Expect = 9.758e-103
Identity = 179/192 (93.23%), Postives = 188/192 (97.92%), Query Frame = 3
Query:   36 MTKQHPAWSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASA 611
            MTKQ   WSPYDNNGGTCVA+AGADYCV AADTRMSTGY+IL+RDYSKIIKLADKCVMASSGFQADV+ALQK+LA+RHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLD+EGKGCV+TYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEA+DLVKTCFASA
Sbjct:    1 MTKQQANWSPYDNNGGTCVAVAGADYCVIAADTRMSTGYNILTRDYSKIIKLADKCVMASSGFQADVRALQKVLASRHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDSEGKGCVFTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAIDLVKTCFASA 192          
BLAST of BQ623931 vs. ExPASy Swiss-Prot
Match: PSB1_ARATH (Proteasome subunit beta type-1 OS=Arabidopsis thaliana GN=PBF1 PE=1 SV=2)

HSP 1 Score: 349.362 bits (895), Expect = 8.847e-96
Identity = 169/192 (88.02%), Postives = 180/192 (93.75%), Query Frame = 3
Query:   36 MTKQHPAWSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASA 611
            MTKQH  WSPYDNNGGTCVAIAG+DYCV AADTRMSTGYSILSRDYSKI KLAD+ V++SSGFQADVKALQK+L +RHLIYQHQHNKQMSCPAM QLLSNTLY+KRFFPYY+FNVLGGLD EGKGCV+TYDAVGSYERVGY +QGSGSTLIMPFLDNQLKSPSPLLLP QD+ TPLSEAEAVDLVKT FASA
Sbjct:    1 MTKQHANWSPYDNNGGTCVAIAGSDYCVIAADTRMSTGYSILSRDYSKIHKLADRAVLSSSGFQADVKALQKVLKSRHLIYQHQHNKQMSCPAMAQLLSNTLYFKRFFPYYAFNVLGGLDEEGKGCVFTYDAVGSYERVGYGAQGSGSTLIMPFLDNQLKSPSPLLLPKQDSNTPLSEAEAVDLVKTVFASA 192          
BLAST of BQ623931 vs. ExPASy Swiss-Prot
Match: PSB1_ORYSJ (Proteasome subunit beta type-1 OS=Oryza sativa subsp. japonica GN=PBF1 PE=2 SV=1)

HSP 1 Score: 316.235 bits (809), Expect = 8.299e-86
Identity = 151/182 (82.97%), Postives = 167/182 (91.76%), Query Frame = 3
Query:   66 YDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASA 611
            Y+NNGGTCVAIAGADYCV AADTR+S GY+IL+RD+SKI +LADKC +ASSGFQ D+KAL K LAAR L+YQHQHNK+MSCPAM QLLSNTLYYKRFFPYY+FNVLGGLD+EGKGCV+TYDAVGSYER GYS+QG+GS LIMP LDNQLKSPSPLLLPA+DAVTPLSE EAVDLVK  FASA
Sbjct:    9 YENNGGTCVAIAGADYCVVAADTRLSVGYNILTRDHSKICELADKCALASSGFQGDIKALHKNLAARELLYQHQHNKRMSCPAMAQLLSNTLYYKRFFPYYAFNVLGGLDSEGKGCVFTYDAVGSYERTGYSAQGTGSALIMPVLDNQLKSPSPLLLPARDAVTPLSETEAVDLVKDVFASA 190          
BLAST of BQ623931 vs. ExPASy Swiss-Prot
Match: PSB1_DICDI (Proteasome subunit beta type-1 OS=Dictyostelium discoideum GN=psmB1 PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 5.259e-48
Identity = 98/189 (51.85%), Postives = 129/189 (68.25%), Query Frame = 3
Query:   48 HPAWSPYDNNGGTCVAIAGADYCVTAADTRMSTG-YSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASA 611
            H  +  Y +NGGT +A+AG DYCV A DTRMS G Y I +R Y+KI +L  KCV+A+SG QAD  ALQK L +    ++ +H K MS PA+ Q LSNTLYYKRFFPYY+FN++ G+D +G+G ++TYDAVGS+ERV YSSQGSG+ L++P LDNQ+   +  ++     V   S  + V  VK    SA
Sbjct:   20 HGRFEAYVDNGGTVLAVAGKDYCVIAGDTRMSDGGYGIQTRKYTKIFQLTKKCVLATSGMQADTIALQKRLKSMLESFEKEHGKPMSTPAIAQFLSNTLYYKRFFPYYTFNLVAGVDEQGEGWIWTYDAVGSHERVKYSSQGSGNQLVIPLLDNQVAKFNQQIVEGNKDV---SCEQVVSFVKDSITSA 205          
BLAST of BQ623931 vs. ExPASy Swiss-Prot
Match: PSB1B_CARAU (Proteasome subunit beta type-1-B OS=Carassius auratus GN=psmb1-B PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.135e-42
Identity = 88/185 (47.57%), Postives = 119/185 (64.32%), Query Frame = 3
Query:   57 WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASA 611
            +SPY  NGGT +A+AG D+ + A+DTR+S GYSI SRD  K  KL D  V+  SGF  D   L K++ AR  +Y+H +NK M+  A+  +LS  LY +RFFPYY +N++GGLD EG+G VY++D VGSY+R  Y + GS S ++ P LDNQ+   +           PLS+ +AV LVK  F SA
Sbjct:   26 FSPYAFNGGTVLAVAGEDFALVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKSMTSGAIAAMLSTILYGRRFFPYYVYNIIGGLDEEGRGAVYSFDPVGSYQRDTYKAGGSASAMLQPLLDNQIGFKN----MENVEQVPLSQEKAVQLVKDVFISA 206          
BLAST of BQ623931 vs. ExPASy Swiss-Prot
Match: PSB1A_CARAU (Proteasome subunit beta type-1-A OS=Carassius auratus GN=psmb1-A PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.135e-42
Identity = 88/185 (47.57%), Postives = 119/185 (64.32%), Query Frame = 3
Query:   57 WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASA 611
            +SPY  NGGT +A+AG D+ + A+DTR+S GYSI SRD  K  KL D  V+  SGF  D   L K++ AR  +Y+H +NK M+  A+  +LS  LY +RFFPYY +N++GGLD EG+G VY++D VGSY+R  Y + GS S ++ P LDNQ+   +           PLS+ +AV LVK  F SA
Sbjct:   27 FSPYAFNGGTVLAVAGEDFALVASDTRLSEGYSIHSRDSPKCYKLTDTTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKSMTSGAIAAMLSTILYGRRFFPYYVYNIIGGLDEEGRGAVYSFDPVGSYQRDTYKAGGSASAMLQPLLDNQIGFKN----MENVEQVPLSQEKAVQLVKDVFISA 207          
BLAST of BQ623931 vs. ExPASy Swiss-Prot
Match: PSB1_HUMAN (Proteasome subunit beta type-1 OS=Homo sapiens GN=PSMB1 PE=1 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 2.140e-41
Identity = 87/185 (47.03%), Postives = 119/185 (64.32%), Query Frame = 3
Query:   57 WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASA 611
            +SPY  NGGT +AIAG D+ + A+DTR+S G+SI +RD  K  KL DK V+  SGF  D   L K++ AR  +Y+H +NK M+  A+  +LS  LY +RFFPYY +N++GGLD EGKG VY++D VGSY+R  + + GS S ++ P LDNQ+   +   +       PLS   A+ LVK  F SA
Sbjct:   30 FSPYVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEH----VPLSLDRAMRLVKDVFISA 210          
BLAST of BQ623931 vs. ExPASy Swiss-Prot
Match: PSB1_BOVIN (Proteasome subunit beta type-1 OS=Bos taurus GN=PSMB1 PE=1 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.140e-41
Identity = 87/185 (47.03%), Postives = 119/185 (64.32%), Query Frame = 3
Query:   57 WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASA 611
            +SPY  NGGT +AIAG D+ + A+DTR+S G+SI +RD  K  KL DK V+  SGF  D   L K++ AR  +Y+H +NK M+  A+  +LS  LY +RFFPYY +N++GGLD EGKG VY++D VGSY+R  + + GS S ++ P LDNQ+   +   +       PLS   A+ LVK  F SA
Sbjct:   30 FSPYAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEH----VPLSLDRAMRLVKDVFISA 210          
BLAST of BQ623931 vs. ExPASy Swiss-Prot
Match: PSB1_MOUSE (Proteasome subunit beta type-1 OS=Mus musculus GN=Psmb1 PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 4.768e-41
Identity = 86/185 (46.49%), Postives = 119/185 (64.32%), Query Frame = 3
Query:   57 WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASA 611
            +SPY  NGGT +AIAG D+ + A+DTR+S G+SI +RD  K  KL DK V+  SGF  D   L K++ AR  +Y+H +NK M+  A+  +LS  LY +RFFPYY +N++GGLD EGKG VY++D VGSY+R  + + GS S ++ P LDNQ+   +   +       PL+   A+ LVK  F SA
Sbjct:   29 FSPYAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEH----VPLTLDRAMRLVKDVFISA 209          
BLAST of BQ623931 vs. ExPASy Swiss-Prot
Match: PSB1_RAT (Proteasome subunit beta type-1 OS=Rattus norvegicus GN=Psmb1 PE=1 SV=3)

HSP 1 Score: 164.466 bits (415), Expect = 4.036e-40
Identity = 85/185 (45.95%), Postives = 118/185 (63.78%), Query Frame = 3
Query:   57 WSPYDNNGGTCVAIAGADYCVTAADTRMSTGYSILSRDYSKIIKLADKCVMASSGFQADVKALQKLLAARHLIYQHQHNKQMSCPAMGQLLSNTLYYKRFFPYYSFNVLGGLDNEGKGCVYTYDAVGSYERVGYSSQGSGSTLIMPFLDNQLKSPSPLLLPAQDAVTPLSEAEAVDLVKTCFASA 611
            +SPY  NGGT +AIAG D+ + A+DTR+S G+SI +RD  K  KL DK V+  SGF  D   L K++ AR  +Y+H +NK M+  A+  +LS  LY +RFFPYY +N++ GLD EGKG VY++D VGSY+R  + + GS S ++ P LDNQ+   +   +       PL+   A+ LVK  F SA
Sbjct:   29 FSPYAFNGGTVLAIAGEDFSIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIEGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEH----VPLTLDRAMRLVKDVFISA 209          
The following BLAST results are available for this feature:
BLAST of BQ623931 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
PSB1_PETHY9.758e-10393.23Proteasome subunit beta type-1 OS=Petunia hybrida ... [more]
PSB1_ARATH8.847e-9688.02Proteasome subunit beta type-1 OS=Arabidopsis thal... [more]
PSB1_ORYSJ8.299e-8682.97Proteasome subunit beta type-1 OS=Oryza sativa sub... [more]
PSB1_DICDI5.259e-4851.85Proteasome subunit beta type-1 OS=Dictyostelium di... [more]
PSB1B_CARAU1.135e-4247.57Proteasome subunit beta type-1-B OS=Carassius aura... [more]
PSB1A_CARAU1.135e-4247.57Proteasome subunit beta type-1-A OS=Carassius aura... [more]
PSB1_HUMAN2.140e-4147.03Proteasome subunit beta type-1 OS=Homo sapiens GN=... [more]
PSB1_BOVIN2.140e-4147.03Proteasome subunit beta type-1 OS=Bos taurus GN=PS... [more]
PSB1_MOUSE4.768e-4146.49Proteasome subunit beta type-1 OS=Mus musculus GN=... [more]
PSB1_RAT4.036e-4045.95Proteasome subunit beta type-1 OS=Rattus norvegicu... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_01022 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01022 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623931 ID=BQ623931; Name=BQ623931; organism=Citrus sinensis; type=EST; length=623bp
GCCAAATTTCAAACCCTAATTACTGACAATTCATCATGACGAAGCAGCAT
CCCGCATGGTCTCCATACGACAATAATGGAGGAACTTGTGTTGCGATTGC
CGGAGCTGATTACTGTGTAACCGCTGCCGACACTCGAATGTCAACCGGTT
ACAGTATCCTCTCCCGCGATTACTCCAAAATCATTAAACTGGCAGACAAA
TGTGTTATGGCCTCTTCTGGTTTTCAAGCTGATGTCAAAGCCTTACAAAA
ACTCTTGGCAGCAAGGCATTTGATCTATCAGCATCAGCACAACAAGCAAA
TGAGCTGCCCTGCAATGGGCCAACTACTCTCCAACACCCTGTACTACAAA
CGTTTCTTTCCTTACTATTCATTTAATGTCTTGGGTGGGCTTGACAATGA
AGGGAAGGGTTGTGTCTACACATATGATGCTGTTGGTTCCTATGAGAGGG
TTGGATATAGCTCCCAGGGTTCTGGTTCCACGCTCATCATGCCATTCCTC
GATAACCAACTAAAGTCTCCCAGTCCTCTCCTATTGCCTGCCCAGGATGC
TGTTACTCCTCTTTCAGAGGCTGAAGCAGTTGATTTGGTCAAAACTTGTT
TTGCATCAGCACTGAGAGGGACA
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