BQ623943

Overview
NameBQ623943
Unique NameBQ623943
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length458
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11002 contig Csv1_Contig11002:493..949. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623943 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 1.487e-56
Identity = 100/113 (88.50%), Postives = 110/113 (97.35%), Query Frame = 1 
Query:    1 FSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAGQGKTP 339
            FSFG+LLGTQL+LMGWVESKRWVDFF+P+SQSVEWATPWS+TAENFAN TGEQGYPGGKFFDPL LAGT+ +GVY+PDTEKL+RLKVAEIKHARLAM+AMLIFYFEAGQGKTP
Sbjct:  138 FSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIFYFEAGQGKTP 250
[Close]
BLAST of BQ623943 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 7.382e-56
Identity = 100/113 (88.50%), Postives = 110/113 (97.35%), Query Frame = 1 
Query:    1 FSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAGQGKTP 339
            FSFG+LLGTQLLLMGWVESKRWVDFF+P+SQSVEWATPWSRTAENF+N+TGEQGYPGGKFFDPL LAGTI +GVY PDT+KL+RLK+AEIKHARLAM+AMLIFYFEAGQGKTP
Sbjct:  143 FSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAMLIFYFEAGQGKTP 255
[Close]
BLAST of BQ623943 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 6.249e-55
Identity = 97/113 (85.84%), Postives = 109/113 (96.46%), Query Frame = 1 
Query:    1 FSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAGQGKTP 339
            FSFGSLLGTQLLLMGWVESKRWVDFF+ +SQS++WATPWS+TAENFAN TGEQGYPGGKFFDPL LAGT+ +GVY+PDTEKL+RLK+AEIKH+RLAM+AMLIFYFEAGQGKTP
Sbjct:  138 FSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTAENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLIFYFEAGQGKTP 250
The following BLAST results are available for this feature:
BLAST of BQ623943 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CB4A_SOLLC1.487e-5688.50Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB4_SPIOL7.382e-5688.50Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB4B_SOLLC6.249e-5585.84Chlorophyll a-b binding protein CP24 10B, chloropl... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_01034 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01034 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623943 ID=BQ623943; Name=BQ623943; organism=Citrus sinensis; type=EST; length=458bp
TTCTCCTTCGGCTCACTCCTGGGAACCCAGCTTCTCCTTATGGGTTGGGT
TGAGAGCAAGCGGTGGGTTGATTTTTTCAATCCTGAATCCCAATCAGTTG
AATGGGCAACACCATGGTCAAGAACTGCTGAAAACTTTGCCAATGCGACT
GGTGAACAAGGCTACCCTGGTGGAAAGTTTTTTGATCCCTTATGTTTGGC
TGGAACAATTAAGGATGGTGTCTACATTCCTGACACTGAGAAGCTTGACA
GGCTCAAAGTTGCTGAGATTAAACATGCTAGGCTTGCTATGGTGGCCATG
TTGATTTTCTACTTTGAAGCTGGCCAAGGCAAGACGCCACTTGGGGCTCT
TGGTTTGTAAAACATGCTTATGTAGATAACTCACTGATTGATGTTAAAGG
GTAATCAATCGGATGTATATGAGTTCCCTCAATGAGAGTTCAATTTGATG
GGGTTAGT
back to top