BQ623950

Overview
NameBQ623950
Unique NameBQ623950
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623950 vs. ExPASy Swiss-Prot
Match: Y4523_ARATH (Probable serine/threonine-protein kinase At4g35230 OS=Arabidopsis thaliana GN=At4g35230 PE=1 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 5.954e-106
Identity = 116/137 (84.67%), Postives = 128/137 (93.43%), Query Frame = 3
Query:    3 LDMIRGKNILHLMDSHLEGNFSSEEATVVFDLASRCLQYEPRERPNTKDLVSTLAPLQNRPDVPSYVMLGIPRHEEAPPTPQHPLSPMGDACSRMDLTAIHQILVMTHYKDDEGTNELSFQEWTQQMRDMLEARKRG 413
            LDMIRGKNI+ LMDSHLEG FS+EEATVV +LAS+CLQYEPRERPNTKDLV+TLAPLQ + DVPSYVMLGI + EEAP TPQ PLSP+G+ACSRMDLTAIHQILVMTHY+DDEGTNELSFQEWTQQM+DML+ARKRG
Sbjct:  274 LDMIRGKNIILLMDSHLEGKFSTEEATVVVELASQCLQYEPRERPNTKDLVATLAPLQTKSDVPSYVMLGIKKQEEAPSTPQRPLSPLGEACSRMDLTAIHQILVMTHYRDDEGTNELSFQEWTQQMKDMLDARKRG 410          

HSP 2 Score: 161.384 bits (407), Expect = 5.954e-106
Identity = 75/90 (83.33%), Postives = 84/90 (93.33%), Query Frame = 1
Query:  412 GDVAFREKEFKTAVDCYSQFIDVGTMVSPTVYAGRSLCHLMCDQPDAALRDAMQAQCVYPDWSTAFYMQAVALAKLDMHKDAADMLKEAA 681
            GD +FREK+FKTA+DCYSQFIDVGTMVSPTV+  RSLC+L+CDQPDAALRDAMQAQCVYPDW TAFYMQ+VALAKL+M+ DAADML EAA
Sbjct:  410 GDQSFREKDFKTAIDCYSQFIDVGTMVSPTVFGRRSLCYLLCDQPDAALRDAMQAQCVYPDWPTAFYMQSVALAKLNMNTDAADMLNEAA 499          
BLAST of BQ623950 vs. ExPASy Swiss-Prot
Match: SSP_ARATH (Probable inactive receptor-like kinase SSP OS=Arabidopsis thaliana GN=SSP PE=1 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.226e-61
Identity = 64/136 (47.06%), Postives = 96/136 (70.59%), Query Frame = 3
Query:    6 DMIRGKNILHLMDSHLEGNFSSEEATVVFDLASRCLQYEPRERPNTKDLVSTLAPLQNRPDVPSYVMLGIPRHEEAPPTPQHPLSPMGDACSRMDLTAIHQILVMTHYKDDEGTNELSFQEWTQQMRDMLEARKRG 413
            +MI  KN+  LMD +L+G FS +EA VV+ LAS+CL+YE +E PNTK++V+TL  LQ R + PSY ++ +   E+   +  + LSP+G+AC RMDL +IH ILV+  Y DD+   ELSF+EW Q+++++ + R+ G
Sbjct:  236 EMIHRKNVFKLMDPYLKGKFSIDEANVVYKLASQCLKYEGQESPNTKEIVATLETLQTRTEAPSYEVVEMTNQEKDASSSSN-LSPLGEACLRMDLASIHSILVLAGYDDDKDIIELSFEEWIQEVKELQDVRRNG 370          

HSP 2 Score: 121.324 bits (303), Expect = 1.226e-61
Identity = 57/90 (63.33%), Postives = 73/90 (81.11%), Query Frame = 1
Query:  412 GDVAFREKEFKTAVDCYSQFIDVGTMVSPTVYAGRSLCHLMCDQPDAALRDAMQAQCVYPDWSTAFYMQAVALAKLDMHKDAADMLKEAA 681
            GD AF E++FKTA+ CYSQF++  ++V P+VYA RSL +L CD+P+ AL D M AQ V+PDW TAFY+Q+VALAKLDM+ D+AD LKEAA
Sbjct:  370 GDRAFVEQDFKTAIACYSQFVEERSLVYPSVYARRSLSYLFCDEPEKALLDGMHAQGVFPDWPTAFYLQSVALAKLDMNTDSADTLKEAA 459          
BLAST of BQ623950 vs. ExPASy Swiss-Prot
Match: Y5126_ARATH (Probable serine/threonine-protein kinase At5g41260 OS=Arabidopsis thaliana GN=At5g41260 PE=1 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 8.546e-60
Identity = 77/138 (55.80%), Postives = 95/138 (68.84%), Query Frame = 3
Query:    3 LDMIRGKNILHLMDSHLEGNFSSEEATVVFDLASRCLQYEPRERPNTKDLVSTLAPLQNRPDVPSYVMLGIPRHEEAPPTPQHPLSPMGDACSRMDLTAIHQILVMTHYKDDEG-TNELSFQEWTQQMRDMLEARKRG 413
            LD+IR +NI  LMDS LEG FSS++ T +  LASRCLQYEPRERPN K LVS + PLQ   ++ S+ +LG+P            LSP+G+AC R DLTAIH+I+    YKDDEG T ELSFQ WT QM+D L  +K+G
Sbjct:  257 LDLIRDRNIQMLMDSGLEGQFSSDDGTELIRLASRCLQYEPRERPNPKSLVSAMIPLQKDLEIASHQLLGVPNSATTT-----ALSPLGEACLRSDLTAIHEIIEKLGYKDDEGATTELSFQMWTDQMQDTLVFKKKG 389          

HSP 2 Score: 103.605 bits (257), Expect = 8.546e-60
Identity = 51/90 (56.67%), Postives = 64/90 (71.11%), Query Frame = 1
Query:  412 GDVAFREKEFKTAVDCYSQFIDVGTMVSPTVYAGRSLCHLMCDQPDAALRDAMQAQCVYPDWSTAFYMQAVALAKLDMHKDAADMLKEAA 681
            GD AFR K+F  A++CYSQFI+VGTM SPTV+A +SLC+LM D P  AL +AMQAQ + P W  A Y+QAVAL+ L    +A   LK+ A
Sbjct:  389 GDSAFRHKDFAKAIECYSQFIEVGTMGSPTVHARQSLCYLMNDMPREALNNAMQAQVISPAWHIASYLQAVALSALGQENEAHTALKDGA 478          
The following BLAST results are available for this feature:
BLAST of BQ623950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
Y4523_ARATH5.954e-10684.67Probable serine/threonine-protein kinase At4g35230... [more]
SSP_ARATH1.226e-6147.06Probable inactive receptor-like kinase SSP OS=Arab... [more]
Y5126_ARATH8.546e-6055.80Probable serine/threonine-protein kinase At5g41260... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_01041 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01041 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623950 ID=BQ623950; Name=BQ623950; organism=Citrus sinensis; type=EST; length=686bp
CACTTGATATGATTCGGGGAAAGAATATTCTTCATTTAATGGATTCACAT
TTGGAGGGAAACTTTTCATCTGAAGAGGCAACAGTTGTCTTTGATCTTGC
TTCACGGTGTTTGCAATATGAGCCTAGGGAGCGGCCAAATACAAAAGATC
TTGTTTCTACACTTGCTCCCCTACAAAATAGACCTGATGTTCCTTCTTAT
GTGATGCTGGGAATTCCAAGGCATGAGGAAGCACCTCCTACTCCACAGCA
CCCTCTTTCTCCAATGGGTGATGCTTGTTCACGGATGGACCTCACAGCCA
TCCACCAGATCTTGGTGATGACACACTACAAAGATGATGAAGGAACCAAT
GAGTTGTCTTTTCAAGAGTGGACCCAACAAATGAGAGATATGTTGGAGGC
TAGAAAGCGTGGGGGATGTGGCATTCCGAGAGAAAGAATTTAAAACTGCC
GTAGATTGCTATTCTCAGTTTATAGACGTGGGAACCATGGTTTCACCAAC
TGTCTATGCCGGGAGAAGTCTTTGTCATTTAATGTGTGACCAGCCAGATG
CTGCACTTAGAGATGCAATGCAAGCACAATGTGTTTATCCCGACTGGTCC
ACAGCATTTTACATGCAGGCTGTTGCCCTTGCGAAGTTGGACATGCACAA
GGATGCAGCTGATATGTTAAAGGAGGCTGCCTCATT
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