BQ623956

Overview
NameBQ623956
Unique NameBQ623956
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length373
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5152 contig Csv1_Contig5152:188..560. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623956 vs. ExPASy Swiss-Prot
Match: NLTP2_PRUAR (Non-specific lipid-transfer protein 2 OS=Prunus armeniaca PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.176e-16
Identity = 32/54 (59.26%), Postives = 44/54 (81.48%), Query Frame = 1
Query:    1 LTSSAPPSGPCCNKLRQQRPCLCGYLRDPNLKQYVNSPNAKRVVATCGIPYPRC 162
            + S AP    CC KLR+QRPCLCGYL++P+L+QYVNSPNA+++ + CG+P P+C
Sbjct:   15 INSGAPSPTTCCQKLREQRPCLCGYLKNPSLRQYVNSPNARKLASNCGVPVPQC 68          
BLAST of BQ623956 vs. ExPASy Swiss-Prot
Match: NLTP_VIGUN (Probable non-specific lipid-transfer protein AKCS9 OS=Vigna unguiculata PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.217e-15
Identity = 30/54 (55.56%), Postives = 42/54 (77.78%), Query Frame = 1
Query:    1 LTSSAPPSGPCCNKLRQQRPCLCGYLRDPNLKQYVNSPNAKRVVATCGIPYPRC 162
            +T  + PS  CC+KL+ Q PCLC Y+++P+LKQYVNSP AK+V++ CG+ YP C
Sbjct:   46 ITGGSKPSSTCCSKLKVQEPCLCNYIKNPSLKQYVNSPGAKKVLSNCGVTYPNC 99          
BLAST of BQ623956 vs. ExPASy Swiss-Prot
Match: NLT2P_WHEAT (Non-specific lipid-transfer protein 2P OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.651e-11
Identity = 25/54 (46.30%), Postives = 34/54 (62.96%), Query Frame = 1
Query:    1 LTSSAPPSGPCCNKLRQQRPCLCGYLRDPNLKQYVNSPNAKRVVATCGIPYPRC 162
            + S A PSG CC  LR Q+PC C Y +DP   QY+ SP+A+  + +CG+  P C
Sbjct:   14 ILSGAKPSGECCGNLRAQQPCFCQYAKDPTYGQYIRSPHARDTLQSCGLAVPHC 67          
BLAST of BQ623956 vs. ExPASy Swiss-Prot
Match: NLTP2_HORVU (Probable non-specific lipid-transfer protein OS=Hordeum vulgare GN=LTP2 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.380e-11
Identity = 26/48 (54.17%), Postives = 33/48 (68.75%), Query Frame = 1
Query:   19 PSGPCCNKLRQQRPCLCGYLRDPNLKQYVNSPNAKRVVATCGIPYPRC 162
            PSG CC  LR Q+ CLC Y++DPN   YV+SP+A+  +  CGIP P C
Sbjct:   55 PSGECCGNLRAQQGCLCQYVKDPNYGHYVSSPHARDTLNLCGIPVPHC 102          
The following BLAST results are available for this feature:
BLAST of BQ623956 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
NLTP2_PRUAR1.176e-1659.26Non-specific lipid-transfer protein 2 OS=Prunus ar... [more]
NLTP_VIGUN2.217e-1555.56Probable non-specific lipid-transfer protein AKCS9... [more]
NLT2P_WHEAT5.651e-1146.30Non-specific lipid-transfer protein 2P OS=Triticum... [more]
NLTP2_HORVU7.380e-1154.17Probable non-specific lipid-transfer protein OS=Ho... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_01047 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01047 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623956 ID=BQ623956; Name=BQ623956; organism=Citrus sinensis; type=EST; length=373bp
CTCACGTCGTCGGCGCCGCCGTCCGGACCATGCTGCAACAAGCTGAGGCA
GCAGAGGCCATGCCTTTGTGGGTACCTGAGAGACCCTAATCTGAAGCAAT
ATGTTAACTCTCCCAATGCCAAAAGGGTTGTTGCAACCTGTGGAATTCCC
TATCCTCGGTGTTAGGTTTTAATTAAATGTTTTATCAAAAAGCTTGTCAT
AAATAAAAAAAGTGTGTTGCAAGATTGATTAGTGAGTATTAACATGGAAT
ATGCTAAAGTTTGTGAATCATGGATGGCTTGGTTGCCATCAATGTACTTA
TGAAGATGGAATATATATGAGTATGTTGTAAAATATACGGAGAATGAACC
AATAATAAGCTGTATTTATGTTA
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