BQ623957

Overview
NameBQ623957
Unique NameBQ623957
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length455
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2660 contig Csv1_Contig2660:209..662. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623957 vs. ExPASy Swiss-Prot
Match: RS211_ARATH (40S ribosomal protein S21-1 OS=Arabidopsis thaliana GN=RPS21B PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.040e-29
Identity = 42/53 (79.25%), Postives = 50/53 (94.34%), Query Frame = 3
Query:  102 AAVQINIGHVDADGIYTGQFSTFALCGFVRAQGDGDSAIDRLWQKKKVEVRQQ 260
            A+VQ+NIGH+DA+G+YTGQF+TFALCGFVRAQGD DS +DRLWQKKKVE +QQ
Sbjct:   30 ASVQLNIGHLDANGLYTGQFTTFALCGFVRAQGDADSGVDRLWQKKKVEAKQQ 82          

HSP 2 Score: 51.6026 bits (122), Expect = 7.040e-29
Identity = 22/29 (75.86%), Postives = 26/29 (89.66%), Query Frame = 2
Query:   14 MQNEEGQNMDLYIPRKCSATNRLITSKDH 100
            M+N+ GQ  +LYIPRKCSATNR+ITSKDH
Sbjct:    1 MENDAGQVTELYIPRKCSATNRMITSKDH 29          
BLAST of BQ623957 vs. ExPASy Swiss-Prot
Match: RS212_ARATH (40S ribosomal protein S21-2 OS=Arabidopsis thaliana GN=RPS21C PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 8.560e-20
Identity = 45/69 (65.22%), Postives = 57/69 (82.61%), Query Frame = 3
Query:   69 PQTGSSPPRII-----AAVQINIGHVDADGIYTGQFSTFALCGFVRAQGDGDSAIDRLWQKKKVEVRQQ 260
            P+  S+  R+I     A+VQ+NIGH+DA+G+YTGQF+TFALCGFVRAQGD DS +DRLWQKKKVE +Q+
Sbjct:   14 PRKCSATNRLITSKDHASVQLNIGHLDANGLYTGQFTTFALCGFVRAQGDADSGVDRLWQKKKVEAKQK 82          
BLAST of BQ623957 vs. ExPASy Swiss-Prot
Match: RS21_ORYSJ (40S ribosomal protein S21 OS=Oryza sativa subsp. japonica GN=RPS21 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 4.697e-18
Identity = 44/69 (63.77%), Postives = 55/69 (79.71%), Query Frame = 3
Query:   69 PQTGSSPPRII-----AAVQINIGHVDADGIYTGQFSTFALCGFVRAQGDGDSAIDRLWQKKKVEVRQQ 260
            P+  S+  RII     A+VQINIGHVD +G+Y G+F+TFAL GF+RAQGD DSA+DRLWQK+K EV+QQ
Sbjct:   14 PRKCSATNRIITAKDHASVQINIGHVDENGLYDGRFTTFALSGFIRAQGDADSALDRLWQKRKAEVKQQ 82          
BLAST of BQ623957 vs. ExPASy Swiss-Prot
Match: RS21_MAIZE (40S ribosomal protein S21 OS=Zea mays GN=RPS21 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.367e-17
Identity = 43/68 (63.24%), Postives = 54/68 (79.41%), Query Frame = 3
Query:   69 PQTGSSPPRII-----AAVQINIGHVDADGIYTGQFSTFALCGFVRAQGDGDSAIDRLWQKKKVEVRQ 257
            P+  S+  RII     A+VQINIGH+DA+G+Y G F+TFAL GFVRAQGD DS++DRLWQKKK E++Q
Sbjct:   14 PRKCSATNRIITAKDHASVQINIGHLDANGLYDGHFTTFALSGFVRAQGDADSSLDRLWQKKKAEIKQ 81          
BLAST of BQ623957 vs. ExPASy Swiss-Prot
Match: RS21_PECGU (40S ribosomal protein S21 OS=Pectinaria gouldii GN=rps-21 PE=3 SV=1)

HSP 1 Score: 48.1358 bits (113), Expect = 1.252e-11
Identity = 18/29 (62.07%), Postives = 26/29 (89.66%), Query Frame = 2
Query:   14 MQNEEGQNMDLYIPRKCSATNRLITSKDH 100
            MQN++G+ +D+YIPRKCSATN ++ +KDH
Sbjct:    1 MQNDQGEIVDVYIPRKCSATNNILAAKDH 29          

HSP 2 Score: 42.3578 bits (98), Expect = 1.252e-11
Identity = 21/49 (42.86%), Postives = 32/49 (65.31%), Query Frame = 3
Query:  102 AAVQINIGHVDAD-GIYTGQFSTFALCGFVRAQGDGDSAIDRLWQKKKV 245
            A+VQIN+  +D   G  TG+  T+ALCG +R  G+ D +++RL  K K+
Sbjct:   30 ASVQINMAEIDPQTGRMTGKQITYALCGELRRMGEADDSVNRLAMKDKM 78          
The following BLAST results are available for this feature:
BLAST of BQ623957 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RS211_ARATH7.040e-2979.2540S ribosomal protein S21-1 OS=Arabidopsis thalian... [more]
RS212_ARATH8.560e-2065.2240S ribosomal protein S21-2 OS=Arabidopsis thalian... [more]
RS21_ORYSJ4.697e-1863.7740S ribosomal protein S21 OS=Oryza sativa subsp. j... [more]
RS21_MAIZE1.367e-1763.2440S ribosomal protein S21 OS=Zea mays GN=RPS21 PE=... [more]
RS21_PECGU1.252e-1162.0740S ribosomal protein S21 OS=Pectinaria gouldii GN... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_01048 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01048 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623957 ID=BQ623957; Name=BQ623957; organism=Citrus sinensis; type=EST; length=455bp
AAACTCAGCCAAGATGCAGAACGAGGAGGGTCAAAACATGGATCTCTATA
TCCCCAGGAAGTGTTCCGCCACAAACAGGCTCATCACCTCCAAGGATCAT
CGCCGCTGTCCAGATCAACATCGGGCACGTTGATGCTGATGGCATTTACA
CCGGCCAATTCTCCACTTTCGCTCTCTGCGGCTTCGTCCGCGCTCAGGGT
GACGGTGACAGCGCCATTGACAGGCTTTGGCAAAAGAAGAAAGTTGAGGT
CCGACAACAATAATTTTCCATTAAAGCAAGTTATGTGTCTTCTCTAGCAG
TTGTCTTCTTCTGCAAGGGTTGGAATGTGATTGCAACGACTCGTTTGTTC
TAGTTTTACTTATGTGGACCATGTTGAAATTTACTTCTGCTTTTGGACCA
TGATTAGCACTTAGTTTGTTTATCTGTCGAACTTAATATATGGTCACGAT
TTGCT
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