BQ623965

Overview
NameBQ623965
Unique NameBQ623965
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length511
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9120 contig Csv1_Contig9120:72..582. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623965 vs. ExPASy Swiss-Prot
Match: YKT61_ARATH (VAMP-like protein YKT61 OS=Arabidopsis thaliana GN=YKT61 PE=2 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 2.201e-71
Identity = 125/149 (83.89%), Postives = 138/149 (92.62%), Query Frame = 1
Query:   64 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRNGLCAMGFMDDHYPVRSSFSLLNQVLDEYQKNFGESWRTAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDE 510
            MKITALLVLKC P+ SDPV+L+ A DVSHFGYFQRSSVKEF++FV RTV  RTPP QRQSVQHEEYKVH+YNRNGLCA+GFMDDHYPVRS+FSLLNQVLDEYQK+FGESWR+A+ D+ QPWPYL EALNK+QDPAEADKLLKIQRELDE
Sbjct:    1 MKITALLVLKCAPEASDPVILSNASDVSHFGYFQRSSVKEFVVFVGRTVASRTPPSQRQSVQHEEYKVHAYNRNGLCAVGFMDDHYPVRSAFSLLNQVLDEYQKSFGESWRSAKEDSNQPWPYLTEALNKFQDPAEADKLLKIQRELDE 149          
BLAST of BQ623965 vs. ExPASy Swiss-Prot
Match: YKT62_ARATH (VAMP-like protein YKT62 OS=Arabidopsis thaliana GN=YKT62 PE=2 SV=1)

HSP 1 Score: 223.402 bits (568), Expect = 4.760e-58
Identity = 107/151 (70.86%), Postives = 130/151 (86.09%), Query Frame = 1
Query:   64 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQ--RSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRNGLCAMGFMDDHYPVRSSFSLLNQVLDEYQKNFGESWRTAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDE 510
            MKITALLVLKC+P+  +PV+LA   D+S FG F   RS+ +EFI+F+ARTV +RTPPGQRQSV+HEEYKVH+YN NGLCA+GFMDDHYPVRS+FSLLNQVLD YQK++G++WR    ++ QPWPYL EA +K++DPAEADKLLKIQRELDE
Sbjct:    1 MKITALLVLKCDPETREPVILANVSDLSQFGKFSFYRSNFEEFIVFIARTVARRTPPGQRQSVKHEEYKVHAYNINGLCAVGFMDDHYPVRSAFSLLNQVLDVYQKDYGDTWRF--ENSSQPWPYLKEASDKFRDPAEADKLLKIQRELDE 149          
BLAST of BQ623965 vs. ExPASy Swiss-Prot
Match: YKT6_SCHPO (Synaptobrevin homolog ykt6 OS=Schizosaccharomyces pombe GN=ykt6 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 4.345e-27
Identity = 66/152 (43.42%), Postives = 99/152 (65.13%), Query Frame = 1
Query:   64 MKITALLVLKCNPDGSDPV-VLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNR-NGLCAMGFMDDHYPVRSSFSLLNQVLDEY-QKNFGESWRTAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDE 510
            MK+ ++ +L+ +P    PV +L TA D+S F +FQRSS+ EF+ F  +TV +RT PGQRQ V+   Y  H YNR +GLC +   D  YP+R +++LLN++LDE+  KN    W +        +P L+  L+KYQDP +AD ++++Q+ELDE
Sbjct:    1 MKLYSVSILRFDPK---PVQLLCTASDLSSFSFFQRSSIGEFMNFFTKTVAERTNPGQRQDVEQSNYVFHVYNRSDGLCGVIASDKEYPLRVAYTLLNKILDEFLTKNPRTKWESGAV--TLSFPELDTYLSKYQDPKQADTIMRVQQELDE 147          
BLAST of BQ623965 vs. ExPASy Swiss-Prot
Match: YKT6_ASHGO (Synaptobrevin homolog YKT6 OS=Ashbya gossypii GN=YKT6 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.183e-24
Identity = 63/152 (41.45%), Postives = 95/152 (62.50%), Query Frame = 1
Query:   64 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCAMGFMDDHYPVRSSFSLLNQVLDEY-QKNFGESWR-TAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDE 510
            MKI ++ +L+ +  G+  + L +A D+S FG+F+R+ V +F+ F   TV  RT  GQRQS++   Y  H Y+R+ GLC +   D  YPVR +++LLN+VLDEY   +    WR  AQ  +      L   L KYQDP++AD ++++Q+ELDE
Sbjct:    1 MKIYSIAILRNS--GNKALELCSAKDLSQFGFFERNGVSQFMTFFGETVAGRTGAGQRQSIEEGNYVGHVYSRSEGLCGVLITDKEYPVRPAYTLLNKVLDEYLVAHPPAEWRDIAQTSDQLKLRELEMYLAKYQDPSQADSIMRVQQELDE 150          
BLAST of BQ623965 vs. ExPASy Swiss-Prot
Match: YKT6_CANGA (Synaptobrevin homolog YKT6 OS=Candida glabrata GN=YKT6 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 5.873e-24
Identity = 59/132 (44.70%), Postives = 85/132 (64.39%), Query Frame = 1
Query:  124 LATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCAMGFMDDHYPVRSSFSLLNQVLDEY-QKNFGESWRTAQADN-MQPWPYLNEALNKYQDPAEADKLLKIQRELDE 510
            L    D+S FG+F+R+SV +F+ F A TV  RT  GQRQSV+   Y  H Y R+ G+C +   D  YPVR +++LLN+VLDEY   +  + W++  A N       L+  ++KYQDPA+AD ++K+Q+ELDE
Sbjct:   24 LTEVKDLSQFGFFERNSVGQFMTFFAETVATRTTAGQRQSVEEGNYIGHVYARSEGICGVLITDKDYPVRPAYTLLNKVLDEYLVAHPADQWKSITATNDSLKMAELSTYISKYQDPAQADAIMKVQQELDE 155          
BLAST of BQ623965 vs. ExPASy Swiss-Prot
Match: YKT6_YARLI (Synaptobrevin homolog YKT6 OS=Yarrowia lipolytica GN=YKT6 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 7.670e-24
Identity = 62/152 (40.79%), Postives = 98/152 (64.47%), Query Frame = 1
Query:   64 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNR-NGLCAMGFMDDHYPVRSSFSLLNQVLDEY-QKNFGESWRTA-QADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDE 510
            MK+  + +L+  P+  + V LA+A D+S + +F+RS+V +   F+A TV  RT PGQRQSV+  +Y  H+Y R +GL  +   D  YPVR +++LLN+VL+EY  K+    W  A +A +    P L + + +YQDP +AD ++++Q+ELDE
Sbjct:    1 MKLYYIGILR--PNKPEAVQLASASDLSSYSWFERSTVGQAFTFLAETVIPRTEPGQRQSVEENDYVGHAYLRSDGLGGVIITDQEYPVRVAYTLLNKVLEEYLTKHPKAEWENAKEASSKLAMPELEDYVKRYQDPHQADAIMRVQQELDE 150          
BLAST of BQ623965 vs. ExPASy Swiss-Prot
Match: YKT6_YEAST (Synaptobrevin homolog YKT6 OS=Saccharomyces cerevisiae GN=YKT6 PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.002e-23
Identity = 57/138 (41.30%), Postives = 87/138 (63.04%), Query Frame = 1
Query:  106 GSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCAMGFMDDHYPVRSSFSLLNQVLDEY-QKNFGESWR-TAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDE 510
            G   + L+   D+S FG+F+RSSV +F+ F A TV  RT  GQRQS++   Y  H Y R+ G+C +   D  YPVR +++LLN++LDEY   +  E W    + ++      L+  ++KYQDP++AD ++K+Q+ELDE
Sbjct:   13 GEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAGQRQSIEEGNYIGHVYARSEGICGVLITDKEYPVRPAYTLLNKILDEYLVAHPKEEWADVTETNDALKMKQLDTYISKYQDPSQADAIMKVQQELDE 150          
BLAST of BQ623965 vs. ExPASy Swiss-Prot
Match: YKT6_KLULA (Synaptobrevin homolog YKT6 OS=Kluyveromyces lactis GN=YKT6 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 8.480e-23
Identity = 61/152 (40.13%), Postives = 95/152 (62.50%), Query Frame = 1
Query:   64 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNR-NGLCAMGFMDDHYPVRSSFSLLNQVLDEYQKNFGE-SWR-TAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDE 510
            MKI  + VL+ + D +  + L++  D+S FG+F+R+SV +F+ F + TV  RT  GQRQSV+   Y  H Y R  G+C +   D  YPVR +++LLN+VLDEY        W+   ++D+      L+  + KYQDP++AD ++++Q+ELDE
Sbjct:    1 MKIYYIGVLRNSDDKT--LELSSVKDLSQFGFFERNSVAQFMSFFSETVAGRTSAGQRQSVEEGNYVGHVYARPEGICGVLITDKEYPVRPAYTLLNKVLDEYLVAHPPIQWKDVTESDDSLKLKELDIYIAKYQDPSQADAIMRVQQELDE 150          
BLAST of BQ623965 vs. ExPASy Swiss-Prot
Match: YKT6_DEBHA (Synaptobrevin homolog YKT6 OS=Debaryomyces hansenii GN=YKT6 PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 8.480e-23
Identity = 57/152 (37.50%), Postives = 92/152 (60.53%), Query Frame = 1
Query:   64 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCAMGFMDDHYPVRSSFSLLNQVLDEY-QKNFGESWRTAQADNMQ-PWPYLNEALNKYQDPAEADKLLKIQRELDE 510
            MKI  + +L+    G   + L +A D+S F +F+R+ V +F+ F + TV +RT  GQRQS++   Y  H+Y R+ GL  +   D  YPVR +++L+N++L+EY   +  + W    A N    +  L   + KYQDP++AD ++K+Q+ELDE
Sbjct:    1 MKIYYIGILRIG--GEKALELTSARDLSQFSFFERNGVSQFMTFFSETVSQRTQAGQRQSIEEGNYIGHTYTRSEGLACVIITDKEYPVRPAYTLINKILEEYLSLHPQKDWANISATNASFNYDNLEHYIKKYQDPSQADSIMKVQQELDE 150          
BLAST of BQ623965 vs. ExPASy Swiss-Prot
Match: YKT6_BOVIN (Synaptobrevin homolog YKT6 OS=Bos taurus GN=YKT6 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 8.480e-23
Identity = 63/151 (41.72%), Postives = 90/151 (59.60%), Query Frame = 1
Query:   64 MKITALLVLKCNPDGSDPVVLATAMDVSHFGYFQRSSVKEFILFVARTVGKRTPPGQRQSVQHEEYKVHSYNRN-GLCAMGFMDDHYPVRSSFSLLNQVLDEYQKNFGE-SWRTAQADNMQPWPYLNEALNKYQDPAEADKLLKIQRELDE 510
            MK+ +L VL      S  V+L  A DVS F +FQRSSV+EF+ F ++ + +R+  G R SV+ +EY  H Y RN  L  +   D  YP R +F+LL +VLDE+ K      W T   D ++ +  L+  L++YQ+P EAD + K+Q ELDE
Sbjct:    1 MKLYSLSVLYKGE--SKTVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAKGSRASVKEQEYLCHVYVRNDSLAGVVIADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPTGSPDTIR-YSGLDSQLSRYQNPREADPMTKVQAELDE 148          
The following BLAST results are available for this feature:
BLAST of BQ623965 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
YKT61_ARATH2.201e-7183.89VAMP-like protein YKT61 OS=Arabidopsis thaliana GN... [more]
YKT62_ARATH4.760e-5870.86VAMP-like protein YKT62 OS=Arabidopsis thaliana GN... [more]
YKT6_SCHPO4.345e-2743.42Synaptobrevin homolog ykt6 OS=Schizosaccharomyces ... [more]
YKT6_ASHGO1.183e-2441.45Synaptobrevin homolog YKT6 OS=Ashbya gossypii GN=Y... [more]
YKT6_CANGA5.873e-2444.70Synaptobrevin homolog YKT6 OS=Candida glabrata GN=... [more]
YKT6_YARLI7.670e-2440.79Synaptobrevin homolog YKT6 OS=Yarrowia lipolytica ... [more]
YKT6_YEAST1.002e-2341.30Synaptobrevin homolog YKT6 OS=Saccharomyces cerevi... [more]
YKT6_KLULA8.480e-2340.13Synaptobrevin homolog YKT6 OS=Kluyveromyces lactis... [more]
YKT6_DEBHA8.480e-2337.50Synaptobrevin homolog YKT6 OS=Debaryomyces hanseni... [more]
YKT6_BOVIN8.480e-2341.72Synaptobrevin homolog YKT6 OS=Bos taurus GN=YKT6 P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_01056 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01056 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623965 ID=BQ623965; Name=BQ623965; organism=Citrus sinensis; type=EST; length=511bp
CTTTTCAAAAAACCAAACGACGCCGAATCAGACGAACCGAACAACTTTCA
CAGCAGGAGGAGGATGAAGATCACGGCGTTACTGGTTTTGAAGTGCAACC
CGGACGGATCGGATCCGGTTGTGTTAGCGACCGCCATGGACGTTAGCCAT
TTCGGTTACTTTCAACGATCCAGCGTTAAGGAGTTCATCCTCTTCGTCGC
TCGCACTGTCGGTAAACGGACTCCGCCCGGCCAGCGCCAGTCCGTCCAAC
ACGAAGAGTACAAGGTGCATTCTTATAACAGGAATGGACTTTGCGCAATG
GGATTCATGGATGATCATTATCCAGTGCGAAGCTCATTCTCTCTTCTCAA
CCAGGTGCTAGATGAGTATCAGAAAAATTTTGGTGAATCATGGAGGACTG
CACAGGCAGACAACATGCAACCGTGGCCTTATCTAAATGAAGCTTTGAAC
AAATATCAGGACCCAGCGGAGGCTGATAAGCTGTTGAAAATTCAGAGGGA
ATTGGATGAAA
back to top