BQ623975

Overview
NameBQ623975
Unique NameBQ623975
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length703
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3190 contig Csv1_Contig3190:161..861. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623975 vs. ExPASy Swiss-Prot
Match: PAB2_SCHPO (Polyadenylate-binding protein 2 OS=Schizosaccharomyces pombe GN=pab2 PE=2 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 8.124e-30
Identity = 72/118 (61.02%), Postives = 80/118 (67.80%), Query Frame = 3
Query:  111 KEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPR-----RFNPYMGYRGRRPYVPPY 446
            KE  D++SV+VGNVDY+ TPEE+Q HF SCG+VNRVTIL DKF G PKGFAY+EF E   V  AL LN S LH R LKV PKRTNVPGM + R R     R     GYRGR     PY
Sbjct:   49 KESIDAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNALLLNGSMLHERPLKVTPKRTNVPGMSRGRGRGRGRGRGRGRGGYRGRARGFAPY 166          
BLAST of BQ623975 vs. ExPASy Swiss-Prot
Match: PABP2_MOUSE (Polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpn1 PE=2 SV=3)

HSP 1 Score: 124.79 bits (312), Expect = 4.458e-28
Identity = 74/163 (45.40%), Postives = 98/163 (60.12%), Query Frame = 3
Query:   48 KVEKEMGAAQDPAN---VAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGM---------KQYRPRRFNPYMGYRGRRPYVPPYFYSPYGLGEGSRGSKGQ 497
            +VEK+M  +  P N   V  +   K EAD+RS++VGNVDY  T EE++ HF  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES   GRQ+KV+PKRTN PG+          +YR R  N Y   R R       FYS +      R  +G+
Sbjct:  138 EVEKQMNMSPPPGNAGPVIMSLEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRSRYRARTTN-YNSSRSR-------FYSGFNSRPRGRIYRGR 292          
BLAST of BQ623975 vs. ExPASy Swiss-Prot
Match: PABP2_HUMAN (Polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPN1 PE=1 SV=3)

HSP 1 Score: 124.79 bits (312), Expect = 4.458e-28
Identity = 74/163 (45.40%), Postives = 98/163 (60.12%), Query Frame = 3
Query:   48 KVEKEMGAAQDPAN---VAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMK---------QYRPRRFNPYMGYRGRRPYVPPYFYSPYGLGEGSRGSKGQ 497
            +VEK+M  +  P N   V  +   K EAD+RS++VGNVDY  T EE++ HF  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES   GRQ+KV+PKRTN PG+          +YR R  N Y   R R       FYS +      R  +G+
Sbjct:  142 EVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRARYRARTTN-YNSSRSR-------FYSGFNSRPRGRVYRGR 296          
BLAST of BQ623975 vs. ExPASy Swiss-Prot
Match: PABP2_BOVIN (Polyadenylate-binding protein 2 OS=Bos taurus GN=PABPN1 PE=1 SV=3)

HSP 1 Score: 124.79 bits (312), Expect = 4.458e-28
Identity = 74/163 (45.40%), Postives = 98/163 (60.12%), Query Frame = 3
Query:   48 KVEKEMGAAQDPAN---VAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMK---------QYRPRRFNPYMGYRGRRPYVPPYFYSPYGLGEGSRGSKGQ 497
            +VEK+M  +  P N   V  +   K EAD+RS++VGNVDY  T EE++ HF  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES   GRQ+KV+PKRTN PG+          +YR R  N Y   R R       FYS +      R  +G+
Sbjct:  142 EVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVIPKRTNRPGISTTDRGFPRARYRARTTN-YNSSRSR-------FYSGFNSRPRGRVYRGR 296          
BLAST of BQ623975 vs. ExPASy Swiss-Prot
Match: PAB2A_XENLA (Polyadenylate-binding protein 2-A OS=Xenopus laevis GN=pabpn1-A PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.822e-28
Identity = 67/130 (51.54%), Postives = 87/130 (66.92%), Query Frame = 3
Query:   48 KVEKEMGAAQDPAN---VAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRGR 425
            +VEK+M  +  P N   V  +   K EAD+RS++VGNVDY  T EE++ HF  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES   GRQ+KV+PKRTN PG+      R  P   YR R
Sbjct:  133 EVEKQMNMSPPPGNAGPVIMSVEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFCDKESVRTSLALDESLFRGRQIKVVPKRTNRPGIS--TTDRGFPRARYRAR 260          
BLAST of BQ623975 vs. ExPASy Swiss-Prot
Match: PAB2B_XENLA (Polyadenylate-binding protein 2-B OS=Xenopus laevis GN=pabpn1-B PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.604e-28
Identity = 67/130 (51.54%), Postives = 87/130 (66.92%), Query Frame = 3
Query:   48 KVEKEMGAAQDPAN---VAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRGR 425
            +VEK+M  +  P N   V  +   K EAD+RS++VGNVDY  T EE++ HF  CG+VNRVTIL DKF G PKGFAY+EF + ++V+ +L L+ES   GRQ+KV+PKRTN PG+      R  P   YR R
Sbjct:  132 EVEKQMNMSPPPGNAGPVIMSVEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVVPKRTNRPGIS--TTDRGFPRARYRAR 259          
BLAST of BQ623975 vs. ExPASy Swiss-Prot
Match: PABP2_XENTR (Polyadenylate-binding protein 2 OS=Xenopus tropicalis GN=pabpn1 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.212e-27
Identity = 66/130 (50.77%), Postives = 87/130 (66.92%), Query Frame = 3
Query:   48 KVEKEMGAAQDPAN---VAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRGR 425
            +VEK+M  +  P N   V  +   K EAD+RS++VGNVDY  T EE++ HF  CG+VNRVTIL DK+ G PKGFAY+EF + ++V+ +L L+ES   GRQ+KV+PKRTN PG+      R  P   YR R
Sbjct:  133 EVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKYTGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVVPKRTNRPGIS--TTDRGFPRARYRAR 260          
BLAST of BQ623975 vs. ExPASy Swiss-Prot
Match: PABP2_DROME (Polyadenylate-binding protein 2 OS=Drosophila melanogaster GN=Pabp2 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.705e-25
Identity = 67/158 (42.41%), Postives = 88/158 (55.70%), Query Frame = 3
Query:   48 KVEKEM--GAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRP----------------------RRFNPYMGYRGRRPYVPPY 446
            +V+K+M  G+    A V  +   K+E D+RSV+VGNVDY  + EE++ HF  CGT+NRVTIL +K  G PKGFAY+EF   + V+ AL +NE+   GRQ+KV+ KRTN PG+                           R     MGYRGR  Y  PY
Sbjct:   67 EVDKQMAGGSTTGLATVPLSLEEKQEIDTRSVYVGNVDYGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALAMNETLFRGRQIKVMSKRTNRPGLSTTNRFARGSFRGRGARVSRACCHSTFRGARRAMGYRGRANYYAPY 224          
BLAST of BQ623975 vs. ExPASy Swiss-Prot
Match: EPA2B_XENLA (Embryonic polyadenylate-binding protein 2-B OS=Xenopus laevis GN=epabp2-B PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.613e-25
Identity = 59/119 (49.58%), Postives = 82/119 (68.91%), Query Frame = 3
Query:  111 KEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQ-----YRPR-RFNPYMGYRGRRPYVPPY 446
            K+E D RSV+VGNVDY  T ++++ HF SCG++NR+TIL DKF G PKG+AY+EF E ++V  A+ ++E+   GR +KVLPKRTN+PG+       +R R R N     RG+RP   P+
Sbjct:   87 KKEIDKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIKVLPKRTNMPGISSTDRGGFRGRPRGNRGNYQRGQRPRGRPF 205          
BLAST of BQ623975 vs. ExPASy Swiss-Prot
Match: EPA2A_XENLA (Embryonic polyadenylate-binding protein 2-A OS=Xenopus laevis GN=epabp2-A PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.869e-25
Identity = 59/119 (49.58%), Postives = 82/119 (68.91%), Query Frame = 3
Query:  111 KEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQ-----YRPR-RFNPYMGYRGRRPYVPPY 446
            K+E D RSV+VGNVDY  T ++++ HF SCG++NR+TIL DKF G PKG+AY+EF E ++V  A+ ++E+   GR +KVLPKRTN+PG+       +R R R N     RG+RP   P+
Sbjct:   87 KKEIDKRSVYVGNVDYGGTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVTMDETVFRGRTIKVLPKRTNMPGISSTDRGGFRGRPRGNRGNYQRGQRPRGRPF 205          
The following BLAST results are available for this feature:
BLAST of BQ623975 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
PAB2_SCHPO8.124e-3061.02Polyadenylate-binding protein 2 OS=Schizosaccharom... [more]
PABP2_MOUSE4.458e-2845.40Polyadenylate-binding protein 2 OS=Mus musculus GN... [more]
PABP2_HUMAN4.458e-2845.40Polyadenylate-binding protein 2 OS=Homo sapiens GN... [more]
PABP2_BOVIN4.458e-2845.40Polyadenylate-binding protein 2 OS=Bos taurus GN=P... [more]
PAB2A_XENLA5.822e-2851.54Polyadenylate-binding protein 2-A OS=Xenopus laevi... [more]
PAB2B_XENLA7.604e-2851.54Polyadenylate-binding protein 2-B OS=Xenopus laevi... [more]
PABP2_XENTR2.212e-2750.77Polyadenylate-binding protein 2 OS=Xenopus tropica... [more]
PABP2_DROME2.705e-2542.41Polyadenylate-binding protein 2 OS=Drosophila mela... [more]
EPA2B_XENLA4.613e-2549.58Embryonic polyadenylate-binding protein 2-B OS=Xen... [more]
EPA2A_XENLA7.869e-2549.58Embryonic polyadenylate-binding protein 2-A OS=Xen... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_01066 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01066 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623975 ID=BQ623975; Name=BQ623975; organism=Citrus sinensis; type=EST; length=703bp
TGAAGGAGATGGAGGAGGAAGCTGCTGCTCTTCGTGAGATGCAAGCTAAG
GTCGAGAAAGAGATGGGCGCTGCTCAAGATCCTGCTAATGTGGCTGCTAA
TCAAGCAAGCAAAGAAGAGGCAGATTCACGATCAGTCTTTGTTGGCAATG
TAGATTATGCATGCACTCCTGAAGAAGTGCAGCAACATTTCCAATCCTGT
GGTACTGTAAACAGGGTAACTATTCTGACAGACAAGTTTGGCCAGCCAAA
GGGTTTTGCTTATGTGGAATTCCTTGAAATAGATGCTGTTCAAGAGGCTC
TCCAGTTGAATGAGTCTGAATTACATGGCCGTCAACTGAAGGTTTTACCT
AAGAGGACAAATGTCCCTGGTATGAAGCAGTATCGTCCAAGGCGTTTCAA
TCCTTACATGGGGTACCGAGGCAGGAGGCCCTATGTACCTCCTTATTTCT
ATTCACCTTATGGATTGGGGGAAGGTTCCCGAGGTTCAAAAGGCCAATGA
GGTACATGCCCTACTACTAGCAGATTGTGCTCCTGTTGAAGATGGTGACA
TTTGTGGATCATCCATAAACTGAAAAATTCAATGTATCATGGTGCTTATG
TATCCTGCTTTAGATAGGAAACAAAGGATTTATTAGCTACATGTTTATTA
TTGATGTCTTGAATGATCAAACATTATTAGCATGAACTTTATGGAATTTC
TTG
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