BQ623976

Overview
NameBQ623976
Unique NameBQ623976
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9230 contig Csv1_Contig9230:159..840. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623976 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 7.596e-90
Identity = 163/205 (79.51%), Postives = 171/205 (83.41%), Query Frame = 1
Query:   52 KVPLLLGQPSTPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGRI--PAIRXXXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLA 660
            K   ++   STPPVKQGA+R LWFASKQSLSYLDG LPGD+GFDPLGLSDPEGTGGFIEPKWLAYGEVINGR+AMLGA GAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWAD YTLFVLEMALMGFAEHRRFQDWA PGSMG+QYFLG EK LG    PA                KDEKSMK+ KLKE+KNGRLAMLA
Sbjct:   34 KASFVVRAASTPPVKQGANRQLWFASKQSLSYLDGRLPGDFGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPA---YPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLA 235          

HSP 2 Score: 28.1054 bits (61), Expect = 7.596e-90
Identity = 16/25 (64.00%), Postives = 19/25 (76.00%), Query Frame = 3
Query:    3 QILGARSAQSPTGSSRKGSFVVRAA 77
            QI+G+R +QS T   RK SFVVRAA
Sbjct:   21 QIIGSRISQSVT---RKASFVVRAA 42          
BLAST of BQ623976 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 319.701 bits (818), Expect = 9.049e-87
Identity = 162/202 (80.20%), Postives = 169/202 (83.66%), Query Frame = 1
Query:   64 LLGQPSTPPVKQGA-DRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGRI--PAIRXXXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLA 660
            L+   +TPPVKQG  DRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEP+WLAYGEVINGR+AMLGAVGAIAPE LGK GLIPQETALAWFQTGVIPPAGTYNYWAD YTLFVLEMALMGFAEHRRFQDWA PGSMG+QYFLG EK  G    PA                KDEKS+K+ KLKEVKNGRLAMLA
Sbjct:   39 LVRAAATPPVKQGGVDRPLWFASKQSLSYLDGSLPGDYGFDPLGLSDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGFGGSGNPA---YPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLA 237          
BLAST of BQ623976 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.169e-27
Identity = 74/186 (39.78%), Postives = 96/186 (51.61%), Query Frame = 1
Query:  106 DRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGRIPAIRXXXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLA 660
            DRPLWF       +LDGSLPGD+GFDPLGL SDPE        KW A  E+++ R+AMLGA G   PE L K G++      +W+       AG   Y+ D  TLFV+E+ L+G+AE RR+ D   PG +         K  G    +                    +K+ + KE+KNGRLAMLA
Sbjct:   64 DRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESL------KWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVL---NTPSWY------TAGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTG--TDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLA 232          
BLAST of BQ623976 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.908e-26
Identity = 73/195 (37.44%), Postives = 99/195 (50.77%), Query Frame = 1
Query:   79 STPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGRIPAIRXXXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLA 660
            +T  V    DRPLWF       +LDGSLPGD+GFDPLGL SDPE        +W    E+++ R+AMLGA G   PE+L K G++      +W+       AG   Y+ D  TLF++E+ L+G+AE RR+ D   PG +         K  G    +                    +K+ + KE+KNGRLAMLA
Sbjct:   55 TTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESL------RWNQQAELVHCRWAMLGAAGIFIPELLTKIGIL---NTPSWY------TAGEQEYFTDTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFPNNKLTG--TDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLA 232          
BLAST of BQ623976 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 5.058e-21
Identity = 76/201 (37.81%), Postives = 95/201 (47.26%), Query Frame = 1
Query:   82 TPPVKQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMG-----RQYFL--GFEKYLGRIPAIRXXXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLA 660
            T   K  A +  W     S  YL GSL GD GFDPLGL+ DPE        KW    E++NGR+AMLG  G + PE+  K G+I       W+       AG   Y+A   TLFV+E  L  + E RR+QD  NPGS+      +QY L  G   Y G I                   +    ++ K KE+ NGRLAMLA
Sbjct:   45 TSSFKVEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDPENL------KWFVQAELVNGRWAMLGVAGMLLPEVFTKIGII---NVPEWYD------AGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFKQYSLPKGEVGYPGGI---------------FNPLNFAPTQEAKEKELANGRLAMLA 215          
BLAST of BQ623976 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.628e-21
Identity = 71/190 (37.37%), Postives = 93/190 (48.95%), Query Frame = 1
Query:   94 KQGADRPLWFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGRIPAIRXXXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLA 660
            K  A +  W     S  YL GSLPGD GFDPLGL+ DPE        +W    E++NGR+AMLG  G + PE+    G+I       W+       AG   Y+A   TLFV+E  L  + E RR+QD  NPGS+ +     F++Y   +PA                 +     + K KE+ NGRLAMLA
Sbjct:   48 KVEAKKGEWLPGLASPGYLTGSLPGDNGFDPLGLAEDPENL------RWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII---NVPKWY------AAGKEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPI--FKQY--SLPA----GEVGYPGGIFNPLNFAPTLEAKEKEIANGRLAMLA 214          
BLAST of BQ623976 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.523e-17
Identity = 68/182 (37.36%), Postives = 89/182 (48.90%), Query Frame = 1
Query:  118 WFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGVIPPAGTYNYWADPYTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGRIPAIRXXXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLA 660
            W    QS +YLDGSL GD GFDPL L+ DPE      + +W    +V+NGR+AMLG  G + PE+L KAGL+    A  W +       G   Y+A   T   + M+   + E RR+QD  NPGS+ +     F+ Y   +P                   E      K KE+ NGRLAMLA
Sbjct:   36 WLPGLQSPAYLDGSLEGDNGFDPLALAEDPE------DLRWFVQADVVNGRWAMLGVAGMLIPEVLTKAGLM---NAPEWLRL-----PGKETYFASSSTALRVHMS-STYVEIRRWQDIKNPGSVNQDPI--FKSY--SLPPHECGYPGRVFNPLNFAPLEN-----KEKELANGRLAMLA 193          
BLAST of BQ623976 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.240e-15
Identity = 69/199 (34.67%), Postives = 94/199 (47.24%), Query Frame = 1
Query:  100 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGRIPAIRXXXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLA 660
            G DRP +    S+Q+ SYL G  PGDYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G + PEIL K G+   E    WF+ G  I   G  +Y  +P          ++ +++ LMGF E  R         + + Y  G    LG                     D  +  + K+KE+KNGRLAM +
Sbjct:   49 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHSRWAMLGALGCVFPEILSKNGVKFGEA--VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLG------------------LADDPDTFAELKVKELKNGRLAMFS 221          
BLAST of BQ623976 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.240e-15
Identity = 69/199 (34.67%), Postives = 94/199 (47.24%), Query Frame = 1
Query:  100 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEKYLGRIPAIRXXXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLA 660
            G DRP +    S+Q+ SYL G  PGDYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G + PEIL K G+   E    WF+ G  I   G  +Y  +P          ++ +++ LMGF E  R         + + Y  G    LG                     D  +  + K+KE+KNGRLAM +
Sbjct:   49 GPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPET---FARNREL---EVIHSRWAMLGALGCVFPEILSKNGVKFGEA--VWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGGGPLGEGLDKVYPGGAFDPLG------------------LADDPDTFAELKVKELKNGRLAMFS 221          
BLAST of BQ623976 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.576e-14
Identity = 71/200 (35.50%), Postives = 96/200 (48.00%), Query Frame = 1
Query:  100 GADRPLWFA--SKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEILGKAGLIPQETALAWFQTG-VIPPAGTYNYWADP--------YTLFVLEMALMGFAEHRRFQDWANPGSMGRQYFLGFEK-YLGRIPAIRXXXXXXXXXXXXXXKDEKSMKDFKLKEVKNGRLAMLA 660
            G DRP +    S+Q+ SYL G  PGDYG+D  GLS DPE    F   + L   EVI+ R+AMLGA+G + PEIL K G+   E    WF+ G  I   G  +Y  +P          ++  ++ LMGF E  R       G +G     G +K Y G                     D ++  + K+KE+KNGRLAM +
Sbjct:   51 GEDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPE---TFARNREL---EVIHCRWAMLGALGCVFPEILSKNGVTFGEA--VWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYR----VGGGPLGE----GLDKIYPG-----------GAFDPLGLADDPEAFAELKVKEIKNGRLAMFS 223          
The following BLAST results are available for this feature:
BLAST of BQ623976 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
CB13_SOLLC7.596e-9079.51Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA9.049e-8780.20Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB12_PETHY6.169e-2739.78Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB12_SOLLC8.908e-2637.44Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB24_ARATH5.058e-2137.81Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB24_PEA8.628e-2137.37Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB120_HORVU1.523e-1737.36Chlorophyll a-b binding protein 1B-20, chloroplast... [more]
CB23_ORYSJ9.240e-1534.67Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI9.240e-1534.67Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB26_PETSP1.576e-1435.50Chlorophyll a-b binding protein 37, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_01067 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01067 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623976 ID=BQ623976; Name=BQ623976; organism=Citrus sinensis; type=EST; length=685bp
GACAAATTCTTGGAGCAAGATCAGCTCAATCCCCAACTGGGTCATCAAGA
AAAGGTTCCTTTGTTGTTAGGGCAGCCTTCTACTCCTCCTGTTAAGCAAG
GAGCAGACAGACCGTTGTGGTTTGCATCCAAACAAAGCCTTTCATACTTG
GATGGCAGCCTCCCCGGAGACTATGGATTCGACCCACTTGGTCTCTCAGA
CCCTGAAGGCACAGGAGGGTTCATTGAGCCAAAATGGCTGGCCTACGGCG
AGGTCATCAACGGTCGTTATGCCATGTTGGGAGCTGTGGGAGCCATTGCA
CCGGAGATTCTTGGCAAGGCAGGCCTCATTCCGCAAGAAACTGCCCTGGC
CTGGTTCCAAACCGGTGTGATCCCCCCAGCGGGAACATACAACTACTGGG
CAGACCCTTACACACTTTTCGTCCTGGAAATGGCACTCATGGGATTTGCC
GAGCACCGGAGATTCCAAGACTGGGCAAATCCAGGATCAATGGGCAGGCA
ATACTTCCTCGGATTCGAGAAATACTTGGGGAGGATCCCGGCGATCCGGC
TTACCCCTGGAGGACCTCTATTCAACCCTCTGGGTCTTGGGAAAGATGAG
AAGTCAATGAAGGATTTCAAGCTCAAGGAAGTGAAGAATGGAAGATTGGC
AATGTTGGCATCTTGGGTTACTTTGTTCAAGGGCT
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