BQ623989

Overview
NameBQ623989
Unique NameBQ623989
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length366
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623989_ssr254 microsatellite BQ623989_ssr254:254..265. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2668 contig Csv1_Contig2668:364..729. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623989 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.508e-24
Identity = 48/65 (73.85%), Postives = 56/65 (86.15%), Query Frame = 3
Query:    9 CCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 203
            CCNGVRSLN AA+TT DRQAACNCLK A+ SI G+N N+AAGLP +CGVS+PYKISP+TDC  V+
Sbjct:   27 CCNGVRSLNNAAKTTADRQAACNCLKSAFNSIKGLNLNLAAGLPGKCGVSVPYKISPSTDCKSVK 91          
BLAST of BQ623989 vs. ExPASy Swiss-Prot
Match: NLTP_HELAN (Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.004e-23
Identity = 48/67 (71.64%), Postives = 56/67 (83.58%), Query Frame = 3
Query:    3 PPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 203
            P CC+GV+SLN AA+TTPDRQAAC CLK AY SI G+NA  AA  P +CGVSIPYKISP+TDCS+V+
Sbjct:   50 PACCSGVKSLNSAAKTTPDRQAACGCLKSAYNSISGVNAGNAASFPGKCGVSIPYKISPSTDCSKVQ 116          
BLAST of BQ623989 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDU (Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.110e-22
Identity = 44/67 (65.67%), Postives = 56/67 (83.58%), Query Frame = 3
Query:    3 PPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 203
            P CCNG+R++N  ARTTPDRQAACNCLKQ   S+PG+N N AA LP +CGV+IPY+ISP+T+C+ V+
Sbjct:   51 PACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVNIPYQISPSTNCANVK 117          
BLAST of BQ623989 vs. ExPASy Swiss-Prot
Match: NLTP_PRUAV (Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.197e-22
Identity = 42/67 (62.69%), Postives = 55/67 (82.09%), Query Frame = 3
Query:    3 PPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 203
            P CCNG+R++N  A+TT DRQ ACNCLKQ   S+PG+NAN AA LP +CGV++PYKISP+T+C+ V+
Sbjct:   51 PACCNGIRNINNLAKTTADRQTACNCLKQLSASVPGVNANNAAALPGKCGVNVPYKISPSTNCATVK 117          
BLAST of BQ623989 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUPE (Non-specific lipid-transfer protein 1 OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.197e-22
Identity = 44/67 (65.67%), Postives = 54/67 (80.60%), Query Frame = 3
Query:    3 PPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 203
            P CCNG+R++N  ARTTPDRQAACNCLKQ   S+PG+N N AA LP +CGV IPYKIS +T+C+ V+
Sbjct:   25 PACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVHIPYKISASTNCATVK 91          
BLAST of BQ623989 vs. ExPASy Swiss-Prot
Match: NLTP1_SORBI (Non-specific lipid-transfer protein 1 OS=Sorghum bicolor GN=LTP1 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.958e-21
Identity = 45/64 (70.31%), Postives = 52/64 (81.25%), Query Frame = 3
Query:    9 CCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 200
            CC+GVRSLN AARTT DR+AACNCLK A R I G+NA  AA +P +CGVS+PY IS +TDCSRV
Sbjct:   54 CCSGVRSLNSAARTTADRRAACNCLKNAARGISGLNAGNAASIPSKCGVSVPYTISTSTDCSRV 117          
BLAST of BQ623989 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.357e-20
Identity = 42/67 (62.69%), Postives = 53/67 (79.10%), Query Frame = 3
Query:    3 PPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 203
            P CCNG+R++NG ARTT DRQ ACNCLK    SI G+N N AAGLP +CGV++PYKIS +T+C+ V+
Sbjct:   49 PACCNGIRTINGLARTTADRQTACNCLKNLAGSISGVNPNNAAGLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of BQ623989 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDO (Non-specific lipid-transfer protein 1 OS=Prunus domestica PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.357e-20
Identity = 42/67 (62.69%), Postives = 54/67 (80.60%), Query Frame = 3
Query:    3 PPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 203
            P CCNG+R++N  ARTT DR+AACNCLKQ   SIPG+N N AA LP +CGV++PYKIS +T+C+ V+
Sbjct:   25 PACCNGIRNVNNLARTTADRRAACNCLKQLSGSIPGVNPNNAAALPGKCGVNVPYKISASTNCATVK 91          
BLAST of BQ623989 vs. ExPASy Swiss-Prot
Match: NLTP2_SORBI (Non-specific lipid-transfer protein 2 OS=Sorghum bicolor GN=LTP2 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.773e-20
Identity = 45/64 (70.31%), Postives = 51/64 (79.69%), Query Frame = 3
Query:    9 CCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 200
            CC+GVRSLN AARTT DR+AACNCLK A R I G+N   AA +P +CGVSIPY IS +TDCSRV
Sbjct:   58 CCSGVRSLNSAARTTADRRAACNCLKNAARGIRGLNVGKAASIPSKCGVSIPYTISTSTDCSRV 121          
BLAST of BQ623989 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUAR (Non-specific lipid-transfer protein 1 OS=Prunus armeniaca PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 3.024e-20
Identity = 42/67 (62.69%), Postives = 53/67 (79.10%), Query Frame = 3
Query:    3 PPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 203
            P CCNG+R++N  ARTTPDR+ ACNCLKQ   SI G+N N AA LP +CGV+IPYKIS +T+C+ V+
Sbjct:   25 PACCNGIRNVNNLARTTPDRRTACNCLKQLSGSISGVNPNNAAALPGKCGVNIPYKISASTNCATVK 91          
The following BLAST results are available for this feature:
BLAST of BQ623989 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
LTP1_MORNI4.508e-2473.85Non-specific lipid-transfer protein 1 OS=Morus nig... [more]
NLTP_HELAN1.004e-2371.64Non-specific lipid-transfer protein OS=Helianthus ... [more]
NLTP1_PRUDU1.110e-2265.67Non-specific lipid-transfer protein 1 OS=Prunus du... [more]
NLTP_PRUAV7.197e-2262.69Non-specific lipid-transfer protein OS=Prunus aviu... [more]
NLTP1_PRUPE7.197e-2265.67Non-specific lipid-transfer protein 1 OS=Prunus pe... [more]
NLTP1_SORBI7.958e-2170.31Non-specific lipid-transfer protein 1 OS=Sorghum b... [more]
NLTP_MALDO1.357e-2062.69Non-specific lipid-transfer protein OS=Malus domes... [more]
NLTP1_PRUDO1.357e-2062.69Non-specific lipid-transfer protein 1 OS=Prunus do... [more]
NLTP2_SORBI1.773e-2070.31Non-specific lipid-transfer protein 2 OS=Sorghum b... [more]
NLTP1_PRUAR3.024e-2062.69Non-specific lipid-transfer protein 1 OS=Prunus ar... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_01080 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01080 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623989 ID=BQ623989; Name=BQ623989; organism=Citrus sinensis; type=EST; length=366bp
CACCCCCATGCTGTAACGGCGTCAGGTCTCTCAACGGCGCCGCCAGAACC
ACCCCTGACCGCCAAGCTGCATGCAACTGCTTGAAGCAAGCTTACCGATC
AATCCCCGGCATCAACGCTAATGTTGCCGCTGGCCTTCCTCGTCAATGTG
GAGTCAGCATTCCTTACAAGATCAGCCCCAACACTGACTGCTCTAGGGTC
AGGTGAAGTTGAGTTTGAGCTCTGTGACTTTCCAAGTATGATTGACTGAG
AAGAATAAATAAATAAAGAATATATATGTTAATTTCTTTGTCCGAACGAG
TCTCCACTTGTGTGAGTCTCACTCTCATGTCATGTTTGTATCTTTGCTTT
TAATATCATATTAAAT
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