BQ623999

Overview
NameBQ623999
Unique NameBQ623999
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length664
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623999_ssr1 microsatellite BQ623999_ssr1:1..10. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12213 contig Csv1_Contig12213:94..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623999 vs. ExPASy Swiss-Prot
Match: RAA2A_ARATH (Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2 SV=1)

HSP 1 Score: 356.295 bits (913), Expect = 1.856e-104
Identity = 179/195 (91.79%), Postives = 189/195 (96.92%), Query Frame = 1
Query:   19 MARRPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSTSKKD 603
            MARRPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRT+KAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIM+IGNKTDLKHLRAVATEDAQSYAE+EGLSFIETSALEA+NVEKAFQTILSE+YRIISKKS+SS +   + + K+
Sbjct:    1 MARRPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTVKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMLIGNKTDLKHLRAVATEDAQSYAEKEGLSFIETSALEALNVEKAFQTILSEVYRIISKKSISSDQTTANANIKE 195          

HSP 2 Score: 43.1282 bits (100), Expect = 1.856e-104
Identity = 19/25 (76.00%), Postives = 20/25 (80.00%), Query Frame = 3
Query:  588 NIKEGQTIVVGGASEANTKKPCCSS 662
            NIKEGQTI V   SE+N KKPCCSS
Sbjct:  192 NIKEGQTIDVAATSESNAKKPCCSS 216          
BLAST of BQ623999 vs. ExPASy Swiss-Prot
Match: RB2BV_BETVU (Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1)

HSP 1 Score: 317.005 bits (811), Expect = 5.508e-86
Identity = 155/186 (83.33%), Postives = 174/186 (93.55%), Query Frame = 1
Query:   19 MARRPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGE 576
            MA R D EYDYLFK+VLIGDSGVGKSN+LSRFTRNEFCLESKSTIGVEFATRTLQVEG+T+KAQIWDTAGQERYRAITSAYYRGA+GALLVYD+TK  TF+NV RWL+ELRDHADSNIVIMM GNK+DLKHLRAV+ ED Q+ AE+EGLSF+ETSALEA+N+EKAFQTIL+EIY IISKK+L++ E
Sbjct:    1 MANRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLKHLRAVSEEDGQALAEKEGLSFLETSALEAVNIEKAFQTILTEIYHIISKKALAAQE 186          
BLAST of BQ623999 vs. ExPASy Swiss-Prot
Match: RAA2C_ARATH (Ras-related protein RABA2c OS=Arabidopsis thaliana GN=RABA2C PE=2 SV=4)

HSP 1 Score: 314.309 bits (804), Expect = 3.570e-85
Identity = 157/192 (81.77%), Postives = 173/192 (90.10%), Query Frame = 1
Query:   19 MARRPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSTS 594
            M  R D+EYDYLFK+VLIGDSGVGKSN+LSRFTRNEFCLESKSTIGVEFATRT QVEG+TIKAQIWDTAGQERYRAITSAYYRGA+GALLVYD+TK  TF+NV RWL+ELRDHADSNIVIMM GNK+DL HLR+VA ED QS AE+EGLSF+ETSALEA NVEKAFQTIL EIY IISKK+L++ E A + S
Sbjct:    1 MTHRVDQEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTTQVEGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVLRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQSLAEKEGLSFLETSALEATNVEKAFQTILGEIYHIISKKALAAQEAAAANS 192          
BLAST of BQ623999 vs. ExPASy Swiss-Prot
Match: RB11C_LOTJA (Ras-related protein Rab11C OS=Lotus japonicus GN=RAB11C PE=2 SV=1)

HSP 1 Score: 308.916 bits (790), Expect = 1.757e-84
Identity = 151/192 (78.65%), Postives = 172/192 (89.58%), Query Frame = 1
Query:   19 MARRPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSTS 594
            MA R D EYDYLFK+VLIGDSGVGKSN+LSRFTRNEFCLESKSTIGVEFATRTLQVEG+T+KAQIWDTAGQERYRAITSAYYRGA+GALLVYD+TK  TF+NV RWL+ELRDHADSNIVIMM GNK+DL HLRAV+ +D  + +E+EGLSF+ETSALEA N+EKAFQTIL+EIY I+SKK+L++ E     S
Sbjct:    1 MAHRVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRAVSEDDGGALSEKEGLSFLETSALEATNIEKAFQTILTEIYHIVSKKALAAQEATAGAS 192          

HSP 2 Score: 23.8682 bits (50), Expect = 1.757e-84
Identity = 12/22 (54.55%), Postives = 14/22 (63.64%), Query Frame = 3
Query:  597 EGQTIVVGGASEANTKKPCCSS 662
            +G TI V   S  NTKK CCS+
Sbjct:  196 QGTTINVADTS-GNTKKGCCST 216          
BLAST of BQ623999 vs. ExPASy Swiss-Prot
Match: YPTC6_CHLRE (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1)

HSP 1 Score: 309.686 bits (792), Expect = 8.794e-84
Identity = 153/189 (80.95%), Postives = 172/189 (91.01%), Query Frame = 1
Query:   19 MARRPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAP 585
            M+ +PD++YDYLFKVVLIGDSGVGKSNLLSRFTRNEF LESKSTIGVEFATR++QV+G+TIKAQIWDTAGQERYRAITSAYYRGA+GALLVYD+TK  TFENV RWLKELRDHADSNIVIM++GNK+DLKHLR V TE AQ++ EREGLSFIETSALE+ NVEKAFQ IL+EIY I+SKK L S +  P
Sbjct:    1 MSHKPDDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKSVTFENVERWLKELRDHADSNIVIMLVGNKSDLKHLRDVQTEVAQAFCEREGLSFIETSALESTNVEKAFQQILTEIYHIVSKKVLDSEDNRP 189          
BLAST of BQ623999 vs. ExPASy Swiss-Prot
Match: RB11A_TOBAC (Ras-related protein Rab11A OS=Nicotiana tabacum GN=RAB11A PE=2 SV=1)

HSP 1 Score: 306.99 bits (785), Expect = 5.700e-83
Identity = 150/192 (78.12%), Postives = 175/192 (91.15%), Query Frame = 1
Query:   19 MARRPDEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLSSGEPAPSTS 594
            MA R D EYDYLFK+VLIGDSGVGKSN+LSRFTRNEFCLESKSTIGVEFATRTLQVEG+T+KAQIWDTAGQERYRAITSAYYRGA+GALL YD+TK  TF+NV RWL+ELRDH DSNIVI++ GNK+DLKHLRAV+ +D Q+  ++EGLSF+ETSALEA+NV+KAFQTIL++IY IISKK+L++ E A ST+
Sbjct:    1 MANRVDHEYDYLFKMVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLFYDITKRQTFDNVQRWLRELRDHRDSNIVIILAGNKSDLKHLRAVSEQDDQALVKKEGLSFLETSALEALNVDKAFQTILTDIYHIISKKALAAQEAAASTA 192          
BLAST of BQ623999 vs. ExPASy Swiss-Prot
Match: RB11A_RAT (Ras-related protein Rab-11A OS=Rattus norvegicus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 296.975 bits (759), Expect = 5.899e-80
Identity = 144/178 (80.90%), Postives = 168/178 (94.38%), Query Frame = 1
Query:   34 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLS 567
            D+EYDYLFKVVLIGDSGVGKSNLLSRFTRNEF LESKSTIGVEFATR++QV+G+TIKAQIWDTAGQERYRAITSAYYRGA+GALLVYD+ K  T+ENV RWLKELRDHADSNIVIM++GNK+DL+HLRAV T++A+++AE+ GLSFIETSAL++ NVE AFQTIL+EIYRI+S+K +S
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMS 182          
BLAST of BQ623999 vs. ExPASy Swiss-Prot
Match: RB11A_RABIT (Ras-related protein Rab-11A OS=Oryctolagus cuniculus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 296.975 bits (759), Expect = 5.899e-80
Identity = 144/178 (80.90%), Postives = 168/178 (94.38%), Query Frame = 1
Query:   34 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLS 567
            D+EYDYLFKVVLIGDSGVGKSNLLSRFTRNEF LESKSTIGVEFATR++QV+G+TIKAQIWDTAGQERYRAITSAYYRGA+GALLVYD+ K  T+ENV RWLKELRDHADSNIVIM++GNK+DL+HLRAV T++A+++AE+ GLSFIETSAL++ NVE AFQTIL+EIYRI+S+K +S
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMS 182          
BLAST of BQ623999 vs. ExPASy Swiss-Prot
Match: RB11A_PONAB (Ras-related protein Rab-11A OS=Pongo abelii GN=RAB11A PE=2 SV=3)

HSP 1 Score: 296.975 bits (759), Expect = 5.899e-80
Identity = 144/178 (80.90%), Postives = 168/178 (94.38%), Query Frame = 1
Query:   34 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLS 567
            D+EYDYLFKVVLIGDSGVGKSNLLSRFTRNEF LESKSTIGVEFATR++QV+G+TIKAQIWDTAGQERYRAITSAYYRGA+GALLVYD+ K  T+ENV RWLKELRDHADSNIVIM++GNK+DL+HLRAV T++A+++AE+ GLSFIETSAL++ NVE AFQTIL+EIYRI+S+K +S
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMS 182          
BLAST of BQ623999 vs. ExPASy Swiss-Prot
Match: RB11A_PIG (Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11A PE=2 SV=3)

HSP 1 Score: 296.975 bits (759), Expect = 5.899e-80
Identity = 144/178 (80.90%), Postives = 168/178 (94.38%), Query Frame = 1
Query:   34 DEEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVEGRTIKAQIWDTAGQERYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMMIGNKTDLKHLRAVATEDAQSYAEREGLSFIETSALEAINVEKAFQTILSEIYRIISKKSLS 567
            D+EYDYLFKVVLIGDSGVGKSNLLSRFTRNEF LESKSTIGVEFATR++QV+G+TIKAQIWDTAGQERYRAITSAYYRGA+GALLVYD+ K  T+ENV RWLKELRDHADSNIVIM++GNK+DL+HLRAV T++A+++AE+ GLSFIETSAL++ NVE AFQTIL+EIYRI+S+K +S
Sbjct:    5 DDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIVSQKQMS 182          
The following BLAST results are available for this feature:
BLAST of BQ623999 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAA2A_ARATH1.856e-10491.79Ras-related protein RABA2a OS=Arabidopsis thaliana... [more]
RB2BV_BETVU5.508e-8683.33Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB... [more]
RAA2C_ARATH3.570e-8581.77Ras-related protein RABA2c OS=Arabidopsis thaliana... [more]
RB11C_LOTJA1.757e-8478.65Ras-related protein Rab11C OS=Lotus japonicus GN=R... [more]
YPTC6_CHLRE8.794e-8480.95Ras-related protein YPTC6 OS=Chlamydomonas reinhar... [more]
RB11A_TOBAC5.700e-8378.13Ras-related protein Rab11A OS=Nicotiana tabacum GN... [more]
RB11A_RAT5.899e-8080.90Ras-related protein Rab-11A OS=Rattus norvegicus G... [more]
RB11A_RABIT5.899e-8080.90Ras-related protein Rab-11A OS=Oryctolagus cunicul... [more]
RB11A_PONAB5.899e-8080.90Ras-related protein Rab-11A OS=Pongo abelii GN=RAB... [more]
RB11A_PIG5.899e-8080.90Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_01090 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01090 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623999 ID=BQ623999; Name=BQ623999; organism=Citrus sinensis; type=EST; length=664bp
ATATATATATAAATATAAATGGCGAGGAGACCGGACGAGGAATACGATTA
CTTGTTCAAAGTGGTATTAATCGGCGATTCGGGAGTCGGGAAGTCGAACT
TACTCTCCCGATTTACTCGTAACGAGTTCTGTTTGGAGTCCAAATCCACT
ATTGGCGTCGAATTCGCTACACGCACTCTTCAAGTTGAAGGAAGGACAAT
AAAAGCTCAGATATGGGACACTGCAGGTCAGGAGCGATACAGAGCAATAA
CCAGTGCCTATTATAGAGGTGCACTCGGAGCTCTTTTAGTTTACGATGTG
ACAAAACCAACAACATTTGAAAACGTGAGCCGGTGGCTGAAGGAGCTGAG
GGACCACGCAGACTCCAACATCGTGATCATGATGATTGGAAATAAGACTG
ATCTGAAACACCTCCGAGCTGTTGCAACAGAGGACGCCCAAAGCTATGCT
GAGAGAGAAGGGCTTTCCTTCATTGAAACCTCAGCTCTTGAAGCAATAAA
TGTCGAGAAGGCTTTCCAGACAATTCTCTCAGAGATATACCGGATAATCA
GCAAGAAGTCCCTCTCTTCAGGGGAGCCAGCTCCTTCAACATCAAAGAAG
GACAGACTATTGTAGTAGGAGGGGCATCAGAGGCCAACACAAAGAAACCT
TGTTGCTCTTCATC
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