BQ624002

Overview
NameBQ624002
Unique NameBQ624002
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length513
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5152 contig Csv1_Contig5152:50..561. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ624002 vs. ExPASy Swiss-Prot
Match: NLTP2_PRUAR (Non-specific lipid-transfer protein 2 OS=Prunus armeniaca PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.467e-22
Identity = 40/67 (59.70%), Postives = 54/67 (80.60%), Query Frame = 2
Query:  101 TCNPTELSPCLAALTSSAPPSGPCCNKLRQQRPCLCGYLRDPNLKQYVNSPNAKRVVATCGIPYPRC 301
            TC+P +LSPCL  + S AP    CC KLR+QRPCLCGYL++P+L+QYVNSPNA+++ + CG+P P+C
Sbjct:    2 TCSPVQLSPCLGPINSGAPSPTTCCQKLREQRPCLCGYLKNPSLRQYVNSPNARKLASNCGVPVPQC 68          
BLAST of BQ624002 vs. ExPASy Swiss-Prot
Match: NLTP_VIGUN (Probable non-specific lipid-transfer protein AKCS9 OS=Vigna unguiculata PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 9.376e-22
Identity = 40/67 (59.70%), Postives = 53/67 (79.10%), Query Frame = 2
Query:  101 TCNPTELSPCLAALTSSAPPSGPCCNKLRQQRPCLCGYLRDPNLKQYVNSPNAKRVVATCGIPYPRC 301
            TCNPTELS C+ A+T  + PS  CC+KL+ Q PCLC Y+++P+LKQYVNSP AK+V++ CG+ YP C
Sbjct:   33 TCNPTELSSCVPAITGGSKPSSTCCSKLKVQEPCLCNYIKNPSLKQYVNSPGAKKVLSNCGVTYPNC 99          
BLAST of BQ624002 vs. ExPASy Swiss-Prot
Match: NLTP2_HORVU (Probable non-specific lipid-transfer protein OS=Hordeum vulgare GN=LTP2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.450e-14
Identity = 31/66 (46.97%), Postives = 42/66 (63.64%), Query Frame = 2
Query:  104 CNPTELSPCLAALTSSAPPSGPCCNKLRQQRPCLCGYLRDPNLKQYVNSPNAKRVVATCGIPYPRC 301
            C P +L+ C +A+     PSG CC  LR Q+ CLC Y++DPN   YV+SP+A+  +  CGIP P C
Sbjct:   37 CEPAQLAVCASAILGGTKPSGECCGNLRAQQGCLCQYVKDPNYGHYVSSPHARDTLNLCGIPVPHC 102          
BLAST of BQ624002 vs. ExPASy Swiss-Prot
Match: NLTP2_MAIZE (Probable non-specific lipid-transfer protein 2 OS=Zea mays PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.219e-14
Identity = 34/68 (50.00%), Postives = 43/68 (63.24%), Query Frame = 2
Query:  104 CNPTELSPCL--AALTSSAPPSGPCCNKLRQQRPCLCGYLRDPNLKQYVNSPNAKRVVATCGIPYPRC 301
            CNP +L+PC   A    + PP+  CC +LR Q+ CLCGY R PN   Y+ SPNA R+ A C +P PRC
Sbjct:    4 CNPAQLTPCAGPALFGGAVPPA--CCAQLRAQQGCLCGYARSPNYGSYIRSPNAARLFAICNLPMPRC 69          
BLAST of BQ624002 vs. ExPASy Swiss-Prot
Match: NLT2P_WHEAT (Non-specific lipid-transfer protein 2P OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.196e-14
Identity = 29/66 (43.94%), Postives = 42/66 (63.64%), Query Frame = 2
Query:  104 CNPTELSPCLAALTSSAPPSGPCCNKLRQQRPCLCGYLRDPNLKQYVNSPNAKRVVATCGIPYPRC 301
            C  ++L+ C +A+ S A PSG CC  LR Q+PC C Y +DP   QY+ SP+A+  + +CG+  P C
Sbjct:    2 CQASQLAVCASAILSGAKPSGECCGNLRAQQPCFCQYAKDPTYGQYIRSPHARDTLQSCGLAVPHC 67          
BLAST of BQ624002 vs. ExPASy Swiss-Prot
Match: NLTPX_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP-2 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 2.094e-13
Identity = 29/67 (43.28%), Postives = 43/67 (64.18%), Query Frame = 2
Query:  101 TCNPTELSPCLAALTSSAPPSGPCCNKLRQQRPCLCGYLRDPNLKQYVNSPNAKRVVATCGIPYPRC 301
            +CN  +L+ C  A+   A P+  CC+ LR Q+ C C + +DP   +YVNSPNA++ V++CGI  P C
Sbjct:   29 SCNAGQLTVCAGAIAGGARPTAACCSSLRAQQGCFCQFAKDPRYGRYVNSPNARKAVSSCGIALPTC 95          
BLAST of BQ624002 vs. ExPASy Swiss-Prot
Match: NLTPX_ORYSJ (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. japonica GN=LTP-2 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 2.734e-13
Identity = 29/66 (43.94%), Postives = 42/66 (63.64%), Query Frame = 2
Query:  104 CNPTELSPCLAALTSSAPPSGPCCNKLRQQRPCLCGYLRDPNLKQYVNSPNAKRVVATCGIPYPRC 301
            CN  +L+ C  A+   A P+  CC+ LR Q+ C C + +DP   +YVNSPNA++ V++CGI  P C
Sbjct:   30 CNAGQLTVCTGAIAGGARPTAACCSSLRAQQGCFCQFAKDPRYGRYVNSPNARKAVSSCGIALPTC 95          
BLAST of BQ624002 vs. ExPASy Swiss-Prot
Match: NLT2G_WHEAT (Non-specific lipid-transfer protein 2G OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.092e-13
Identity = 28/66 (42.42%), Postives = 41/66 (62.12%), Query Frame = 2
Query:  104 CNPTELSPCLAALTSSAPPSGPCCNKLRQQRPCLCGYLRDPNLKQYVNSPNAKRVVATCGIPYPRC 301
            C  ++L+ C +A+ S A PSG CC  LR Q+ C C Y +DP   QY+ SP+A+  + +CG+  P C
Sbjct:    2 CQASQLAVCASAILSGAKPSGECCGNLRAQQGCFCQYAKDPTYGQYIRSPHARDTLTSCGLAVPHC 67          
The following BLAST results are available for this feature:
BLAST of BQ624002 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
NLTP2_PRUAR2.467e-2259.70Non-specific lipid-transfer protein 2 OS=Prunus ar... [more]
NLTP_VIGUN9.376e-2259.70Probable non-specific lipid-transfer protein AKCS9... [more]
NLTP2_HORVU1.450e-1446.97Probable non-specific lipid-transfer protein OS=Ho... [more]
NLTP2_MAIZE4.219e-1450.00Probable non-specific lipid-transfer protein 2 OS=... [more]
NLT2P_WHEAT7.196e-1443.94Non-specific lipid-transfer protein 2P OS=Triticum... [more]
NLTPX_ORYSI2.094e-1343.28Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]
NLTPX_ORYSJ2.734e-1343.94Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]
NLT2G_WHEAT6.092e-1342.42Non-specific lipid-transfer protein 2G OS=Triticum... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_01093 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01093 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ624002 ID=BQ624002; Name=BQ624002; organism=Citrus sinensis; type=EST; length=513bp
ATGATGCGGAGGGTTTCTTCGGTTGAAGCTGTGAGGTTTGTGATGGTGGT
TTTGGTGGCCGTGGCAGCACTAAGCCAAGTGCATGTAGCAGAGGCAGCCG
ACATGCAATCCAACAGAGCTGAGCCCATGCTTGGCAGCTCTCACGTCGTC
GGCGCCGCCGTCCGGACCATGCTGCAACAAGCTGAGGCAGCAGAGGCCAT
GCCTTTGTGGGTACCTGAGAGACCCTAATCTGAAGCAATATGTTAACTCT
CCCAATGCCAAAAGGGTTGTTGCAACCTGTGGAATTCCCTATCCTCGGTG
TTAGGTTTTAATTAAATGTTTTATCAAAAAGCTTGTCATAAATAAAAAAA
GTGTGTTGCAAGATTGATTAGTGAGTATTAACATGGAATATGCTAAAGTT
TGTGAATCATGGATGGCTTGGTTGCCATCAATGTACTTATGAAGATGGAA
TATATATGAGTATGTTGTAAAATATACGGAGAATGAACCAATAATAAGCT
GTATTTATGTTAA
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