BQ624003

Overview
NameBQ624003
Unique NameBQ624003
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length304
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2280 contig Csv1_Contig2280:937..1240. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ624003 vs. ExPASy Swiss-Prot
Match: RL3_ORYSJ (60S ribosomal protein L3 OS=Oryza sativa subsp. japonica GN=RPL3 PE=2 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 6.072e-45
Identity = 85/96 (88.54%), Postives = 91/96 (94.79%), Query Frame = 2
Query:    2 ESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLKA 289
            ESH+A TEFDRTEKDITPMGGFPHYGVV  DYL+IKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTT EK +++G+LKA
Sbjct:  294 ESHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLKA 389          
BLAST of BQ624003 vs. ExPASy Swiss-Prot
Match: RL32_ARATH (60S ribosomal protein L3-2 OS=Arabidopsis thaliana GN=ARP2 PE=2 SV=4)

HSP 1 Score: 173.326 bits (438), Expect = 3.332e-43
Identity = 80/93 (86.02%), Postives = 89/93 (95.70%), Query Frame = 2
Query:    2 ESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGR 280
            E+HSAMTE+DRTEKDITPMGGFPHYG+V EDYL+IKGCCVGPKKRVVTLRQ+LLKQTSRLA+EEIKLKFID +S  GHGRFQT+QEKAK+YGR
Sbjct:  294 ETHSAMTEYDRTEKDITPMGGFPHYGIVKEDYLMIKGCCVGPKKRVVTLRQTLLKQTSRLAMEEIKLKFIDAASNGGHGRFQTSQEKAKFYGR 386          
BLAST of BQ624003 vs. ExPASy Swiss-Prot
Match: RL31_ARATH (60S ribosomal protein L3-1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=5)

HSP 1 Score: 166.777 bits (421), Expect = 3.118e-41
Identity = 76/94 (80.85%), Postives = 88/94 (93.62%), Query Frame = 2
Query:    2 ESHSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRL 283
            E+H+AMTE+DRTEKD+TPMGGFPHYG+V +DYL+IKGCCVGPKKRVVTLRQSLL QTSRLALEEIKLKFIDT+S FGHGRFQT+ EK ++Y R+
Sbjct:  294 EAHTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLTQTSRLALEEIKLKFIDTASIFGHGRFQTSLEKMRFYNRV 387          
BLAST of BQ624003 vs. ExPASy Swiss-Prot
Match: RL3_DROME (60S ribosomal protein L3 OS=Drosophila melanogaster GN=RpL3 PE=1 SV=3)

HSP 1 Score: 139.043 bits (349), Expect = 6.963e-33
Identity = 63/93 (67.74%), Postives = 77/93 (82.80%), Query Frame = 2
Query:    8 HSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 286
            ++A TE+D T+K ITPMGGFPHYG VN D+++IKGCC+G KKR++TLR+SLLK T R ALE+IKLKFIDTSSK GHGRFQT  +K  + G LK
Sbjct:  301 NNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLK 393          
BLAST of BQ624003 vs. ExPASy Swiss-Prot
Match: RL3_TOXCA (60S ribosomal protein L3 OS=Toxocara canis GN=RPL3 PE=2 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 2.476e-30
Identity = 58/89 (65.17%), Postives = 74/89 (83.15%), Query Frame = 2
Query:   20 TEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 286
            T++D TEK + PMGGFPHYG+VN+D+++I+GCCVG KKR +TLR+SL+ QT R A E+I LK+IDTSSKFGHGRFQT  EK  + G+LK
Sbjct:  302 TDYDITEKSVNPMGGFPHYGLVNQDFVMIRGCCVGSKKRPITLRKSLIVQTKRFAHEKINLKWIDTSSKFGHGRFQTHAEKRAFMGKLK 390          
BLAST of BQ624003 vs. ExPASy Swiss-Prot
Match: RL3_CAEEL (60S ribosomal protein L3 OS=Caenorhabditis elegans GN=rpl-3 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.224e-30
Identity = 59/96 (61.46%), Postives = 78/96 (81.25%), Query Frame = 2
Query:    8 HSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLKA*F 295
            ++  TEFD T+K ITPMGGFP YG+VN+DY++++G  +GPKKR++TLR+SL+ QT R+A E+I LK+IDTSSK GHGRFQTT EK  + G+LK  F
Sbjct:  298 NNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLRGAVLGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDF 393          
BLAST of BQ624003 vs. ExPASy Swiss-Prot
Match: RL3_CAEBR (60S ribosomal protein L3 OS=Caenorhabditis briggsae GN=rpl-3 PE=3 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 3.576e-29
Identity = 58/96 (60.42%), Postives = 77/96 (80.21%), Query Frame = 2
Query:    8 HSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLKA*F 295
            ++  TEFD T+K I PMGGFP YG+VN+DY++++G  +GPKKR++TLR+SL+ QT R+A E+I LK+IDTSSK GHGRFQTT EK  + G+LK  F
Sbjct:  298 NNGSTEFDLTQKTINPMGGFPRYGLVNQDYVMLRGAILGPKKRLITLRKSLITQTKRVAHEKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDF 393          
BLAST of BQ624003 vs. ExPASy Swiss-Prot
Match: RL3L_BOVIN (60S ribosomal protein L3-like OS=Bos taurus GN=RPL3L PE=2 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 3.576e-29
Identity = 59/93 (63.44%), Postives = 73/93 (78.49%), Query Frame = 2
Query:    8 HSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 286
            ++A T +D T+K ITP+GGFPHYG VN D++++KGC  G KKRV+TLR+SLL   SR ALE I+LKFIDT+SKFGHGRFQT QEK  + G  K
Sbjct:  301 NNASTSYDVTDKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQALENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQK 393          
BLAST of BQ624003 vs. ExPASy Swiss-Prot
Match: RL3L_HUMAN (60S ribosomal protein L3-like OS=Homo sapiens GN=RPL3L PE=1 SV=3)

HSP 1 Score: 124.405 bits (311), Expect = 1.775e-28
Identity = 58/93 (62.37%), Postives = 72/93 (77.42%), Query Frame = 2
Query:    8 HSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 286
            ++A T +D T K ITP+GGFPHYG VN D++++KGC  G KKRV+TLR+SLL   SR A+E I+LKFIDT+SKFGHGRFQT QEK  + G  K
Sbjct:  301 NNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQAVENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQK 393          
BLAST of BQ624003 vs. ExPASy Swiss-Prot
Match: RL3_RAT (60S ribosomal protein L3 OS=Rattus norvegicus GN=Rpl3 PE=1 SV=3)

HSP 1 Score: 123.25 bits (308), Expect = 3.954e-28
Identity = 57/93 (61.29%), Postives = 74/93 (79.57%), Query Frame = 2
Query:    8 HSAMTEFDRTEKDITPMGGFPHYGVVNEDYLLIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKAKYYGRLK 286
            ++A T++D ++K I P+GGF HYG V  D++++KGC VG KKRV+TLR+SLL QT R ALE+I LKFIDT+SKFGHGRFQT +EK  + G LK
Sbjct:  301 NNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393          
The following BLAST results are available for this feature:
BLAST of BQ624003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
RL3_ORYSJ6.072e-4588.5460S ribosomal protein L3 OS=Oryza sativa subsp. ja... [more]
RL32_ARATH3.332e-4386.0260S ribosomal protein L3-2 OS=Arabidopsis thaliana... [more]
RL31_ARATH3.118e-4180.8560S ribosomal protein L3-1 OS=Arabidopsis thaliana... [more]
RL3_DROME6.963e-3367.7460S ribosomal protein L3 OS=Drosophila melanogaste... [more]
RL3_TOXCA2.476e-3065.1760S ribosomal protein L3 OS=Toxocara canis GN=RPL3... [more]
RL3_CAEEL4.224e-3061.4660S ribosomal protein L3 OS=Caenorhabditis elegans... [more]
RL3_CAEBR3.576e-2960.4260S ribosomal protein L3 OS=Caenorhabditis briggsa... [more]
RL3L_BOVIN3.576e-2963.4460S ribosomal protein L3-like OS=Bos taurus GN=RPL... [more]
RL3L_HUMAN1.775e-2862.3760S ribosomal protein L3-like OS=Homo sapiens GN=R... [more]
RL3_RAT3.954e-2861.2960S ribosomal protein L3 OS=Rattus norvegicus GN=R... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_01094 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01094 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ624003 ID=BQ624003; Name=BQ624003; organism=Citrus sinensis; type=EST; length=304bp
GGAGTCTCATTCTGCCATGACTGAATTTGACAGGACGGAGAAGGATATCA
CCCCAATGGGAGGCTTCCCCCACTATGGTGTAGTCAATGAAGATTACCTG
CTGATCAAGGGCTGCTGTGTTGGACCTAAGAAGCGTGTTGTGACGTTAAG
GCAGTCCCTACTGAAGCAGACGTCTAGGCTTGCATTGGAGGAGATTAAGC
TCAAGTTCATTGACACATCCTCCAAGTTCGGCCATGGTCGGTTCCAGACA
ACGCAGGAGAAGGCCAAGTACTATGGAAGGCTCAAGGCTTGATTTTGGCC
AACT
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