BQ624039

Overview
NameBQ624039
Unique NameBQ624039
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length685
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig466 contig Csv1_Contig466:897..1581. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ624039 vs. ExPASy Swiss-Prot
Match: CNOT3_MOUSE (CCR4-NOT transcription complex subunit 3 OS=Mus musculus GN=Cnot3 PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 6.789e-42
Identity = 83/153 (54.25%), Postives = 100/153 (65.36%), Query Frame = 1
Query:   28 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 486
            +Q+Y   M E+A++ +P P DSER R Y+PR+P  TPP + Q+  P      F++RLS     T+TLFF FYY + T  QYLAAK LKKQSWR+H KY  WFQRHEEPK   DEFEQGTY+YFD+          W QR K  FTFEY YLED
Sbjct:  608 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-----TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDY--------EKWGQRKKEGFTFEYRYLED 747          
BLAST of BQ624039 vs. ExPASy Swiss-Prot
Match: CNOT3_HUMAN (CCR4-NOT transcription complex subunit 3 OS=Homo sapiens GN=CNOT3 PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 6.789e-42
Identity = 83/153 (54.25%), Postives = 100/153 (65.36%), Query Frame = 1
Query:   28 DQMYNMQMLESAFYKLPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLED 486
            +Q+Y   M E+A++ +P P DSER R Y+PR+P  TPP + Q+  P      F++RLS     T+TLFF FYY + T  QYLAAK LKKQSWR+H KY  WFQRHEEPK   DEFEQGTY+YFD+          W QR K  FTFEY YLED
Sbjct:  610 EQLYQQAMEEAAWHHMPHPSDSERIRQYLPRNPCPTPPYHHQMPPPHSDTVEFYQRLS-----TETLFFIFYYLEGTKAQYLAAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDY--------EKWGQRKKEGFTFEYRYLED 749          
BLAST of BQ624039 vs. ExPASy Swiss-Prot
Match: NOT3_SCHPO (General negative regulator of transcription subunit 3 OS=Schizosaccharomyces pombe GN=not3 PE=1 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 1.980e-33
Identity = 67/139 (48.20%), Postives = 86/139 (61.87%), Query Frame = 1
Query:   73 LPQPKDSERARSYIPRHPAVTPPSYPQVQAPIVSNPAFWERLSLDSYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRKYNTWFQRHEEPKVANDEFEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDE 489
            +P   D+ + + YIP+ P   P  YPQ   P+  +    E +       DTLF+ FYY+  TYQQY+A +ELKKQSWR+H+KY TWFQRHEEPK+  DEFE G+Y YFDF       +  W QR K +F F Y YLED+
Sbjct:  499 VPDATDAAKPQYYIPKDPYPVPHYYPQQPLPLFDSSEMTELVD-----PDTLFYMFYYRPGTYQQYIAGQELKKQSWRFHKKYTTWFQRHEEPKMITDEFESGSYRYFDF-------EGDWVQRKKADFRFTYQYLEDD 625          
The following BLAST results are available for this feature:
BLAST of BQ624039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
CNOT3_MOUSE6.789e-4254.25CCR4-NOT transcription complex subunit 3 OS=Mus mu... [more]
CNOT3_HUMAN6.789e-4254.25CCR4-NOT transcription complex subunit 3 OS=Homo s... [more]
NOT3_SCHPO1.980e-3348.20General negative regulator of transcription subuni... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_01130 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01130 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ624039 ID=BQ624039; Name=BQ624039; organism=Citrus sinensis; type=EST; length=685bp
GCAACTGTGAGTTCCGGCGGCATGCATGATCAGATGTACAATATGCAGAT
GCTTGAATCTGCATTTTATAAACTTCCACAGCCAAAGGATTCAGAACGCG
CCAGGAGCTACATTCCAAGACACCCTGCTGTAACACCTCCTAGCTATCCT
CAAGTTCAGGCACCCATTGTGAGTAACCCTGCTTTCTGGGAACGATTGTC
TCTGGACAGCTACGGTACCGATACACTGTTCTTTGCATTTTACTACCAGC
AGAATACTTACCAGCAATATTTGGCCGCTAAAGAGCTAAAGAAGCAATCT
TGGAGATACCACAGAAAATACAACACATGGTTCCAACGGCATGAGGAGCC
TAAAGTTGCCAATGATGAATTCGAACAGGGAACTTATGTGTACTTTGACT
TTCATATCGCCAATGATGATCTCCAACATGGATGGTGTCAAAGGATCAAG
ACCGAGTTCACTTTTGAGTATAACTACCTTGAAGATGAGCTTATTGTATA
GCGACTGAGTAGAAGATGCTATAAGATTGACCATGGCCAGCAATAGAATT
TGCAGCTGTACAATTTGTATTGATTACACTGTTCCATAATGGTCTATGAA
TTGTTAGGCTGTGTTTCATATCCAGCTTTTACATGTTAATTGAAGAGACT
TTCCTTTTACCGTATGACTACTGAAGAATATCAAT
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