BQ624045

Overview
NameBQ624045
Unique NameBQ624045
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12013 contig Csv1_Contig12013:99..784. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ624045 vs. ExPASy Swiss-Prot
Match: U603_ARATH (UPF0603 protein At1g54780, chloroplastic OS=Arabidopsis thaliana GN=At1g54780 PE=1 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 3.338e-73
Identity = 145/223 (65.02%), Postives = 169/223 (75.78%), Query Frame = 2
Query:    8 SLHAQQQRQSSLFCTKNITCSLKKH-NPQLLNPSLQVPRSWFAHAQQGXXXXXXXXXXXXXXXXYTNGNALASEFDVLNEGPPKDSYLVDDAGVISKVTKSDLKQLLSDLESRKNFHINFITVRKLTIKADAFEYADQVLEKWYPSVEEGNNKGIVVLVTSQKEGAVTGGPAFVKAVGEEVLDATVAENLPVLATDEKYNEAVYSTAKRLVAAIDGLPDTGGP 673
            SLH  +    SL  +K  T S  KH + +   P     R+W   A+QG                   G ALASEF++LN+GPPK++Y+VDDAGV+S+VTKSDLK+LLSDLE RK   +NFITVRKLT KADAFEYADQVLEKWYPS+EEGNNKGIVVL+TSQKEGA+TGGPAF++AVGE +LDATV+ENLPVLATDEKYNEAVYS+AKRLVAAIDG PD GGP
Sbjct:   20 SLHQTKPTSHSLSLSKPTTFSGPKHLSTRFTKPE---SRNWLIDAKQGLAALALSLTLTFSPV----GTALASEFNILNDGPPKETYVVDDAGVLSRVTKSDLKKLLSDLEYRKKLRLNFITVRKLTSKADAFEYADQVLEKWYPSIEEGNNKGIVVLITSQKEGAITGGPAFIEAVGENILDATVSENLPVLATDEKYNEAVYSSAKRLVAAIDGQPDPGGP 235          
BLAST of BQ624045 vs. ExPASy Swiss-Prot
Match: U603_ORYSJ (UPF0603 protein Os05g0401100, chloroplastic OS=Oryza sativa subsp. japonica GN=Os05g0401100 PE=3 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 8.222e-72
Identity = 130/158 (82.28%), Postives = 149/158 (94.30%), Query Frame = 2
Query:  212 ALASEFDVLNEGPPKDSYLVDDAGVISKVTKSDLKQLLSDLESRKNFHINFITVRKLTIKADAFEYADQVLEKWYPSVEEGNNKGIVVLVTSQKEGAVTGGPAFVKAVGEEVLDATVAENLPVLATDEKYNEAVYSTAKRLVAAIDGLPDTGGPKFNE 685
            A+ASEFDVLN GPP+D+Y+VDDAGV+S+VTKSD+K+L+ DLESRKN  INFITVRKLT KADAFEYADQVLEKWYP+VEEGNNKGIVVLVTSQKEGA+TGGPAFV+AVG+E+LD+TV+ENLPVLATDEKYNEA+Y+TAKRL AAIDGLPD GGP F +
Sbjct:   96 AVASEFDVLNGGPPEDTYVVDDAGVLSRVTKSDVKRLVRDLESRKNIRINFITVRKLTSKADAFEYADQVLEKWYPTVEEGNNKGIVVLVTSQKEGAITGGPAFVQAVGDEILDSTVSENLPVLATDEKYNEAIYTTAKRLAAAIDGLPDPGGPTFKD 253          
BLAST of BQ624045 vs. ExPASy Swiss-Prot
Match: U603_ORYSI (UPF0603 protein OsI_019212, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_19898 PE=3 SV=2)

HSP 1 Score: 270.011 bits (689), Expect = 8.222e-72
Identity = 130/158 (82.28%), Postives = 149/158 (94.30%), Query Frame = 2
Query:  212 ALASEFDVLNEGPPKDSYLVDDAGVISKVTKSDLKQLLSDLESRKNFHINFITVRKLTIKADAFEYADQVLEKWYPSVEEGNNKGIVVLVTSQKEGAVTGGPAFVKAVGEEVLDATVAENLPVLATDEKYNEAVYSTAKRLVAAIDGLPDTGGPKFNE 685
            A+ASEFDVLN GPP+D+Y+VDDAGV+S+VTKSD+K+L+ DLESRKN  INFITVRKLT KADAFEYADQVLEKWYP+VEEGNNKGIVVLVTSQKEGA+TGGPAFV+AVG+E+LD+TV+ENLPVLATDEKYNEA+Y+TAKRL AAIDGLPD GGP F +
Sbjct:   96 AVASEFDVLNGGPPEDTYVVDDAGVLSRVTKSDVKRLVRDLESRKNIRINFITVRKLTSKADAFEYADQVLEKWYPTVEEGNNKGIVVLVTSQKEGAITGGPAFVQAVGDEILDSTVSENLPVLATDEKYNEAIYTTAKRLAAAIDGLPDPGGPTFKD 253          
The following BLAST results are available for this feature:
BLAST of BQ624045 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
U603_ARATH3.338e-7365.02UPF0603 protein At1g54780, chloroplastic OS=Arabid... [more]
U603_ORYSJ8.222e-7282.28UPF0603 protein Os05g0401100, chloroplastic OS=Ory... [more]
U603_ORYSI8.222e-7282.28UPF0603 protein OsI_019212, chloroplastic OS=Oryza... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_01136 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01136 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ624045 ID=BQ624045; Name=BQ624045; organism=Citrus sinensis; type=EST; length=686bp
CTCACCTTCTCTACATGCACAGCAGCAAAGACAAAGTTCTCTTTTTTGCA
CCAAAAACATCACTTGCAGCCTCAAAAAACACAACCCTCAGTTACTAAAT
CCATCTTTACAGGTACCCAGAAGCTGGTTTGCTCATGCACAGCAAGGGCT
GGCAGCTCTGGCTCTCTCTTTGGCACTCAGTTTTAGCCCATTACTGTACA
CTAATGGCAATGCACTTGCTTCTGAGTTTGATGTGCTCAATGAGGGCCCA
CCAAAAGATTCCTATTTAGTTGATGATGCAGGTGTGATTAGTAAAGTTAC
AAAATCTGATTTGAAGCAGCTTTTGTCAGATTTGGAGTCGAGGAAGAACT
TCCACATTAACTTCATCACTGTTAGGAAGCTCACTATCAAAGCTGATGCT
TTTGAGTATGCTGACCAAGTATTAGAGAAGTGGTATCCTAGTGTTGAAGA
GGGCAATAACAAGGGCATTGTTGTGCTAGTTACTAGTCAAAAGGAGGGGG
CAGTCACAGGTGGTCCTGCATTCGTCAAAGCTGTTGGTGAAGAAGTTCTT
GATGCTACCGTAGCTGAGAACCTTCCTGTTTTGGCCACGGATGAAAAGTA
CAATGAAGCTGTTTACAGCACTGCTAAACGGCTAGTAGCTGCAATCGATG
GACTTCCTGATACAGGTGGGCCAAAATTTAATGAAA
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