BQ624055

Overview
NameBQ624055
Unique NameBQ624055
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length582
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ624055 vs. ExPASy Swiss-Prot
Match: TC159_ARATH (Translocase of chloroplast 159, chloroplastic OS=Arabidopsis thaliana GN=TOC159 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.122e-37
Identity = 78/141 (55.32%), Postives = 106/141 (75.18%), Query Frame = 3
Query:    6 LGENVATGLKIEDEIAVGKRLVLSGNAGAVQCRGDTAYGANLELRLKDKDFPIXXXXXXXXXXXMNWRGDLNLMANVQSQFSVGRSSKMAVCIGLNKQRSGQVTVKLSSSEQLQMALIGIVPIALSGFRSICPGSAGQSTS 428
            LGEN+ATG+K+ED+IA+GKRLVL G+ G ++ +GD+AYGANLE+RL++ DFPI           + WRGDL L AN+QSQ SVGR+SK+A+  GLN + SGQ+TV+ SSS+QLQ+AL  I+PIA+S ++SI P +     S
Sbjct: 1361 LGENIATGVKLEDQIALGKRLVLVGSTGTMRSQGDSAYGANLEVRLREADFPIGQDQSSFGLSLVKWRGDLALGANLQSQVSVGRNSKIALRAGLNNKMSGQITVRTSSSDQLQIALTAILPIAMSIYKSIRPEATNDKYS 1501          
BLAST of BQ624055 vs. ExPASy Swiss-Prot
Match: TC120_ARATH (Translocase of chloroplast 120, chloroplastic OS=Arabidopsis thaliana GN=TOC120 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.152e-25
Identity = 52/124 (41.94%), Postives = 82/124 (66.13%), Query Frame = 3
Query:    3 LLGENVATGLKIEDEIAVGKRLVLSGNAGAVQCRGDTAYGANLELRLKDKDFPIXXXXXXXXXXXMNWRGDLNLMANVQSQFSVGRSSKMAVCIGLNKQRSGQVTVKLSSSEQLQMALIGIVPI 374
            LLG++V+ GLK+ED++   KR  +  + GA+  RGD AYG  LE + +DKD+P+           M+W GDL +  N+QSQ  +GRSS +     LN + +GQV+++++SSEQLQ+A++ +VP+
Sbjct:  949 LLGDSVSAGLKVEDKLIANKRFRMVMSGGAMTSRGDVAYGGTLEAQFRDKDYPLGRFLSTLGLSVMDWHGDLAIGGNIQSQVPIGRSSNLIARANLNNRGAGQVSIRVNSSEQLQLAVVALVPL 1072          
BLAST of BQ624055 vs. ExPASy Swiss-Prot
Match: TC132_ARATH (Translocase of chloroplast 132, chloroplastic OS=Arabidopsis thaliana GN=TOC132 PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 9.249e-25
Identity = 57/125 (45.60%), Postives = 84/125 (67.20%), Query Frame = 3
Query:    6 LGENVATGLKIEDEIAVGK--RLVLSGNAGAVQCRGDTAYGANLELRLKDKDFPIXXXXXXXXXXXMNWRGDLNLMANVQSQFSVGRSSKMAVCIGLNKQRSGQVTVKLSSSEQLQMALIGIVPI 374
            LG++V+ GLK+ED+    K  R+V+SG  GA+  RGD AYG  LE +L+DKD+P+           M+W GDL +  N+QSQ  +GRSS +     LN + +GQV+V+++SSEQLQ+A++ IVP+
Sbjct: 1068 LGDSVSAGLKVEDKFIASKWFRIVMSG--GAMTSRGDFAYGGTLEAQLRDKDYPLGRFLTTLGLSVMDWHGDLAIGGNIQSQVPIGRSSNLIARANLNNRGAGQVSVRVNSSEQLQLAMVAIVPL 1190          
BLAST of BQ624055 vs. ExPASy Swiss-Prot
Match: TOC90_ARATH (Translocase of chloroplast 90, chloroplastic OS=Arabidopsis thaliana GN=TOC90 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.345e-14
Identity = 44/139 (31.65%), Postives = 78/139 (56.12%), Query Frame = 3
Query:    9 GENVATGLKIEDEIAVGKRLVLSGNAGAVQCRGDTAYGANLELRLKDKDFPIXXXXXXXXXXXMNWRGDLNLMANVQSQFSVGRSSKMAVCIGLNKQRSGQVTVKLSSSEQLQMALIGIVPIALSGFRSICPGSAGQST 425
            G     G K+ED + VGKR+ L+ NAG ++  G TA G + E  ++ +D+P+           ++++ +L L   +Q+QF   R + + V I +N ++ G++ VKL+SSE  ++ALI     AL+ F+++   S  + T
Sbjct:  645 GGKYYVGGKLEDTLLVGKRVKLTANAGQMRGSGQTANGGSFEACIRGRDYPVRNEQIGLTMTALSFKRELVLNYGLQTQFRPARGTNIDVNINMNNRKMGKINVKLNSSEHWEIALIS----ALTMFKALVRRSKTEMT 779          
The following BLAST results are available for this feature:
BLAST of BQ624055 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
TC159_ARATH2.122e-3755.32Translocase of chloroplast 159, chloroplastic OS=A... [more]
TC120_ARATH4.152e-2541.94Translocase of chloroplast 120, chloroplastic OS=A... [more]
TC132_ARATH9.249e-2545.60Translocase of chloroplast 132, chloroplastic OS=A... [more]
TOC90_ARATH7.345e-1431.65Translocase of chloroplast 90, chloroplastic OS=Ar... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_01146 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01146 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ624055 ID=BQ624055; Name=BQ624055; organism=Citrus sinensis; type=EST; length=582bp
CTTTATTAGGCGAAAATGTGGCAACTGGACTTAAAATTGAGGATGAGATT
GCTGTTGGGAAGCGCTTGGTTTTATCAGGAAATGCTGGAGCTGTGCAATG
TCGCGGTGACACGGCATACGGAGCCAACCTGGAACTGCGACTCAAGGATA
AAGATTTTCCTATCGGCAACAACAATTCCAGTCTGGGTCTGTCATTGATG
AACTGGAGAGGTGACCTGAATCTGATGGCCAACGTACAGTCTCAGTTCTC
TGTAGGACGGAGCTCTAAGATGGCAGTCTGCATTGGATTGAACAAGCAGC
GAAGTGGGCAAGTTACTGTCAAATTAAGCAGCTCCGAGCAATTGCAGATG
GCTCTCATTGGTATTGTTCCTATTGCACTGTCCGGTTTTAGAAGTATTTG
TCCCGGTTCTGCTGGCCAAAGCACATCATAGTAGGTGCAGCATCTCTTCG
TTATCAATGGCTATGGCTGTCCCGATTGGATTTGTTTTCATAATACTAAT
CGCTTTTCCCTGTAAAAAAACAATAATGTTCAATTTTCAGCTGTAGCATC
AATGAGATAGAACCTAAATTGTGTTCATCTTT
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