BQ624066

Overview
NameBQ624066
Unique NameBQ624066
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length423
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4537 contig Csv1_Contig4537:486..908. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ624066 vs. ExPASy Swiss-Prot
Match: VP201_ARATH (Vacuolar protein sorting-associated protein 20 homolog 1 OS=Arabidopsis thaliana GN=VPS20.1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.433e-16
Identity = 45/66 (68.18%), Postives = 53/66 (80.30%), Query Frame = 3 
Query:    3 NLEAQLAVQEMPEVPTEGPSEEQEKLDLPNVPTKVPVASRVVADDAEIAPAEASTKRRVMEEPLPA 200
            NLE+QL V EMPEVPT+  SEE EKLDLP+VPTK PVAS     +AEI PAE++TK +V+EEPLPA
Sbjct:  160 NLESQLIVDEMPEVPTK-ESEESEKLDLPDVPTKTPVAS-----NAEITPAESATKTKVLEEPLPA 219
The following BLAST results are available for this feature:
BLAST of BQ624066 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
VP201_ARATH3.433e-1668.18Vacuolar protein sorting-associated protein 20 hom... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_01157 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01157 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ624066 ID=BQ624066; Name=BQ624066; organism=Citrus sinensis; type=EST; length=423bp
ACAACTTGGAAGCTCAGCTTGCAGTTCAAGAAATGCCAGAAGTGCCAACT
GAAGGACCATCCGAAGAACAAGAGAAGTTGGATCTTCCTAATGTTCCAAC
CAAAGTTCCTGTTGCTTCCCGTGTGGTTGCAGATGATGCTGAAATTGCTC
CAGCTGAAGCCTCCACAAAGAGAAGAGTTATGGAGGAGCCGTTGCCGGCA
TAATTGACTGAACGTTTAAACATTATTCGAAATTGCGTAAACAGCCCTTG
ACGGACTATTTCCCGGTGGTGTTTGTCAGCTCATGTACTAATTCTTTTGG
TTTGTTCTTGTGTACATTTCGGCTTGAATTTTAGGAATTACAATGGTTCC
CAAATAAGATTCTTGTACAAATGTGTAAATTATTGTGACATATTATTTTT
TGTGTAGCACAAATTGCAGCTCG
back to top