BQ624076

Overview
NameBQ624076
Unique NameBQ624076
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length481
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ624076 vs. ExPASy Swiss-Prot
Match: DDB1_SOLLC (DNA damage-binding protein 1 OS=Solanum lycopersicum GN=DDB1 PE=1 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 3.683e-75
Identity = 140/150 (93.33%), Postives = 144/150 (96.00%), Query Frame = 3
Query:    3 NSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEELTRLH 452
            NSEGATDEER RLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPH+QYLFLEKLQTNLRKVIKGVGGL+HEQWRSF NEKKTVDAKNFLDGDLIESFLDLSR RM+EISK M+V VEEL KRVEELTRLH
Sbjct:  941 NSEGATDEERSRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHDQYLFLEKLQTNLRKVIKGVGGLSHEQWRSFYNEKKTVDAKNFLDGDLIESFLDLSRNRMEEISKAMSVPVEELMKRVEELTRLH 1090          
BLAST of BQ624076 vs. ExPASy Swiss-Prot
Match: DDB1_SOLCE (DNA damage-binding protein 1 OS=Solanum cheesmanii GN=DDB1 PE=3 SV=1)

HSP 1 Score: 280.026 bits (715), Expect = 3.683e-75
Identity = 140/150 (93.33%), Postives = 144/150 (96.00%), Query Frame = 3
Query:    3 NSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEELTRLH 452
            NSEGATDEER RLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPH+QYLFLEKLQTNLRKVIKGVGGL+HEQWRSF NEKKTVDAKNFLDGDLIESFLDLSR RM+EISK M+V VEEL KRVEELTRLH
Sbjct:  946 NSEGATDEERSRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHDQYLFLEKLQTNLRKVIKGVGGLSHEQWRSFYNEKKTVDAKNFLDGDLIESFLDLSRNRMEEISKAMSVPVEELMKRVEELTRLH 1095          
BLAST of BQ624076 vs. ExPASy Swiss-Prot
Match: DDB1A_ARATH (DNA damage-binding protein 1a OS=Arabidopsis thaliana GN=DDB1A PE=1 SV=1)

HSP 1 Score: 275.018 bits (702), Expect = 1.185e-73
Identity = 133/150 (88.67%), Postives = 145/150 (96.67%), Query Frame = 3
Query:    3 NSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEELTRLH 452
            NSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDS++GQIPTVIFGTVNGVIGVIASLP EQY FLEKLQ++LRKVIKGVGGL+HEQWRSFNNEK+T +A+NFLDGDLIESFLDLSR +M++ISK+MNV VEELCKRVEELTRLH
Sbjct:  939 NSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSEIGQIPTVIFGTVNGVIGVIASLPQEQYTFLEKLQSSLRKVIKGVGGLSHEQWRSFNNEKRTAEARNFLDGDLIESFLDLSRNKMEDISKSMNVQVEELCKRVEELTRLH 1088          
BLAST of BQ624076 vs. ExPASy Swiss-Prot
Match: DDB1B_ARATH (DNA damage-binding protein 1b OS=Arabidopsis thaliana GN=DDB1B PE=1 SV=2)

HSP 1 Score: 263.848 bits (673), Expect = 2.731e-70
Identity = 127/150 (84.67%), Postives = 142/150 (94.67%), Query Frame = 3
Query:    3 NSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEELTRLH 452
            N+EGATDEER R+EVVGEYH+GEFVNRFRHGSLVM+LPDSD+GQIPTVIFGTV+G+IGVIASLP EQY FLEKLQT+LRKVIKGVGGL+HEQWRSFNNEK+T +AK +LDGDLIESFLDLSR +M+EISK M+V VEELCKRVEELTRLH
Sbjct:  939 NNEGATDEERARMEVVGEYHIGEFVNRFRHGSLVMKLPDSDIGQIPTVIFGTVSGMIGVIASLPQEQYAFLEKLQTSLRKVIKGVGGLSHEQWRSFNNEKRTAEAKGYLDGDLIESFLDLSRGKMEEISKGMDVQVEELCKRVEELTRLH 1088          
BLAST of BQ624076 vs. ExPASy Swiss-Prot
Match: DDB1_DICDI (DNA damage-binding protein 1 OS=Dictyostelium discoideum GN=repE PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 5.748e-36
Identity = 69/146 (47.26%), Postives = 102/146 (69.86%), Query Frame = 3
Query:    3 NSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRLPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNVSVEELCKRVEEL 440
            N++   + ER  L+ VG YH+GE +N  RHGSLV RLPDSD   IPT+++ +VNG IGV+AS+  E ++F  KLQ  L +V++GVGG +HE WR+F+N+  T+D+KNF+DGDLIE+FLDL      +    + ++ ++  +R+E L
Sbjct: 1032 NNDSTNELERELLDSVGHYHIGESINSMRHGSLV-RLPDSDQPIIPTILYASVNGSIGVVASISEEDFIFFSKLQKGLNQVVRGVGGFSHETWRAFSNDHHTIDSKNFIDGDLIETFLDLKYESQLKAVADLGITPDDAFRRIESL 1176          
BLAST of BQ624076 vs. ExPASy Swiss-Prot
Match: DDB1_XENLA (DNA damage-binding protein 1 OS=Xenopus laevis GN=ddb1 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.849e-34
Identity = 79/161 (49.07%), Postives = 104/161 (64.60%), Query Frame = 3
Query:    3 NSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMR-LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNV----------SVEELCKRVEELTRLH 452
            +S   TDEER  L+ VG +HLGEFVN F HGSLVM+ L ++      +V+FGTVNG+IG++ SL    Y  L  +Q  L KVIK VG + H  WRSF+ E+KT  A  F+DGDLIESFLD+SR +M E+   + +          +V++L K VEELTR+H
Sbjct:  980 DSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSPPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDVQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVIANLQIDDGSGMKRETTVDDLIKVVEELTRIH 1140          
BLAST of BQ624076 vs. ExPASy Swiss-Prot
Match: DDB1_CHICK (DNA damage-binding protein 1 OS=Gallus gallus GN=DDB1 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 3.154e-34
Identity = 79/161 (49.07%), Postives = 103/161 (63.98%), Query Frame = 3
Query:    3 NSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMR-LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTMNV----------SVEELCKRVEELTRLH 452
            +S   TDEER  L+ VG  HLGEFVN F HGSLVM+ L ++      +V+FGTVNG+IG++ SL    Y  L  +Q  L KVIK VG + H  WRSF+ E+KT  A  F+DGDLIESFLD+SR +M E+   + +          +V++L K VEELTR+H
Sbjct:  980 DSAATTDEERQHLQEVGLSHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQIDDGSGMKREATVDDLIKIVEELTRIH 1140          
BLAST of BQ624076 vs. ExPASy Swiss-Prot
Match: DDB1_PONAB (DNA damage-binding protein 1 OS=Pongo abelii GN=DDB1 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 5.380e-34
Identity = 78/161 (48.45%), Postives = 102/161 (63.35%), Query Frame = 3
Query:    3 NSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMR-LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTM----------NVSVEELCKRVEELTRLH 452
            +S   TDEER  L+ VG +HLGEFVN F HGSLVM+ L ++      +V+FGTVNG+IG++ SL    Y  L  +Q  L KVIK VG + H  WRSF+ E+KT  A  F+DGDLIESFLD+SR +M E+   +            + ++L K VEELTR+H
Sbjct:  980 DSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH 1140          
BLAST of BQ624076 vs. ExPASy Swiss-Prot
Match: DDB1_MOUSE (DNA damage-binding protein 1 OS=Mus musculus GN=Ddb1 PE=1 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 5.380e-34
Identity = 78/161 (48.45%), Postives = 102/161 (63.35%), Query Frame = 3
Query:    3 NSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMR-LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTM----------NVSVEELCKRVEELTRLH 452
            +S   TDEER  L+ VG +HLGEFVN F HGSLVM+ L ++      +V+FGTVNG+IG++ SL    Y  L  +Q  L KVIK VG + H  WRSF+ E+KT  A  F+DGDLIESFLD+SR +M E+   +            + ++L K VEELTR+H
Sbjct:  980 DSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGEASTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH 1140          
BLAST of BQ624076 vs. ExPASy Swiss-Prot
Match: DDB1_HUMAN (DNA damage-binding protein 1 OS=Homo sapiens GN=DDB1 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 5.380e-34
Identity = 78/161 (48.45%), Postives = 102/161 (63.35%), Query Frame = 3
Query:    3 NSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMR-LPDSDVGQIPTVIFGTVNGVIGVIASLPHEQYLFLEKLQTNLRKVIKGVGGLNHEQWRSFNNEKKTVDAKNFLDGDLIESFLDLSRTRMDEISKTM----------NVSVEELCKRVEELTRLH 452
            +S   TDEER  L+ VG +HLGEFVN F HGSLVM+ L ++      +V+FGTVNG+IG++ SL    Y  L  +Q  L KVIK VG + H  WRSF+ E+KT  A  F+DGDLIESFLD+SR +M E+   +            + ++L K VEELTR+H
Sbjct:  980 DSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMKREATADDLIKVVEELTRIH 1140          
The following BLAST results are available for this feature:
BLAST of BQ624076 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
DDB1_SOLLC3.683e-7593.33DNA damage-binding protein 1 OS=Solanum lycopersic... [more]
DDB1_SOLCE3.683e-7593.33DNA damage-binding protein 1 OS=Solanum cheesmanii... [more]
DDB1A_ARATH1.185e-7388.67DNA damage-binding protein 1a OS=Arabidopsis thali... [more]
DDB1B_ARATH2.731e-7084.67DNA damage-binding protein 1b OS=Arabidopsis thali... [more]
DDB1_DICDI5.748e-3647.26DNA damage-binding protein 1 OS=Dictyostelium disc... [more]
DDB1_XENLA1.849e-3449.07DNA damage-binding protein 1 OS=Xenopus laevis GN=... [more]
DDB1_CHICK3.154e-3449.07DNA damage-binding protein 1 OS=Gallus gallus GN=D... [more]
DDB1_PONAB5.380e-3448.45DNA damage-binding protein 1 OS=Pongo abelii GN=DD... [more]
DDB1_MOUSE5.380e-3448.45DNA damage-binding protein 1 OS=Mus musculus GN=Dd... [more]
DDB1_HUMAN5.380e-3448.45DNA damage-binding protein 1 OS=Homo sapiens GN=DD... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_01167 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01167 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ624076 ID=BQ624076; Name=BQ624076; organism=Citrus sinensis; type=EST; length=481bp
GAAATAGTGAAGGTGCCACAGATGAGGAACGAGGTCGTCTTGAGGTGGTT
GGCGAATACCACCTTGGAGAATTTGTCAATCGGTTTCGCCATGGATCCCT
TGTTATGCGCTTGCCGGACTCTGATGTGGGCCAGATCCCAACTGTCATTT
TTGGAACTGTTAATGGGGTCATTGGGGTTATTGCGTCACTTCCACACGAG
CAATATCTATTCTTAGAGAAGCTCCAGACAAACTTGAGGAAGGTGATCAA
GGGAGTTGGAGGGTTGAATCATGAGCAATGGAGGTCCTTTAACAACGAGA
AGAAAACTGTAGATGCTAAGAATTTCCTGGATGGTGATTTAATAGAGTCA
TTTCTTGATCTCAGCCGAACCCGAATGGATGAGATTTCTAAGACAATGAA
TGTTTCTGTGGAGGAGCTTTGTAAGAGAGTTGAGGAACTTACGAGGTTGC
ATTGATAGTGTCCAAAATTCAAGTATTTTTT
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