BQ624084

Overview
NameBQ624084
Unique NameBQ624084
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length540
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ624084 vs. ExPASy Swiss-Prot
Match: GLT1_ARATH (Germin-like protein subfamily T member 1 OS=Arabidopsis thaliana GN=GLP1 PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 1.711e-19
Identity = 57/143 (39.86%), Postives = 68/143 (47.55%), Query Frame = 1
Query:  115 PSRASDPDPLQDVCIADLNAPISINGFPCKPASNVXXXXXXXXXXXXXXXXXVFKRAVTF--GDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGIXXXXXXXXXXXXXXXXFFSKVLTPGMGFLIARALVTWH*MW 537
            PS +SD DPLQD C+ DL A  SINGFPCK A +                       VT    +V  FP +NT G+S+  ++L  GG+NPPH HPR TE G                  FSKVL  G  F+I R LV  H  W
Sbjct:   24 PSLSSDSDPLQDFCVGDLKASASINGFPCKSAVSASDFFYSGLGGPLDTSN---PNGVTVAPANVLTFPGLNTLGISMNNVELAPGGVNPPHLHPRATEVGTVIEGSVFVGFLSTNNTLFSKVLNAGEAFVIPRGLV--HFQW 161          
BLAST of BQ624084 vs. ExPASy Swiss-Prot
Match: GLT2_ARATH (Germin-like protein subfamily T member 2 OS=Arabidopsis thaliana GN=At1g18980 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.234e-19
Identity = 55/141 (39.01%), Postives = 71/141 (50.35%), Query Frame = 1
Query:  115 PSRASDPDPLQDVCIADLNAPISINGFPCKPASNVXXXXXXXXXXXXXXXXXVFKRAVTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGIXXXXXXXXXXXXXXXXFFSKVLTPGMGFLIARALVTWH*MW 537
            PS +SD DPLQD C+ DL A  SINGFPCK + +                      AV+  +V  FP +NT G+S+  ++   GG+NPPH+HPR TEAG+                 FSKVL  G  F++ R LV  H  W
Sbjct:   24 PSLSSDSDPLQDFCVGDLKASPSINGFPCKSSVSASDFFFSGLGGPLNTSTPNGV-AVSPANVLTFPGLNTLGLSMNNVEFAPGGVNPPHSHPRATEAGVVIEGSVFVGFLTTNNTLFSKVLNAGEMFVVPRGLV--HFQW 161          
BLAST of BQ624084 vs. ExPASy Swiss-Prot
Match: GL11_ORYSJ (Germin-like protein 1-1 OS=Oryza sativa subsp. japonica GN=GER4 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.918e-19
Identity = 55/135 (40.74%), Postives = 66/135 (48.89%), Query Frame = 1
Query:  115 PSRASDPDPLQDVCIADLNAPISINGFPCKPASNVXXXXXXXXXXXXXXXXXVFKRAVTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGIXXXXXXXXXXXXXXXXFFSKVLTPGMGFLIARALV 519
            PS A DPD LQDVC+ADL +P+ +NGFPCK A+                        VT  +V  FP VNT GVS+ R+D   GG NPPHTHPR TE                    F+K +T G  F+  R LV
Sbjct:   21 PSLAGDPDMLQDVCVADLASPVKLNGFPCK-ANVTADDFFFAGLKNPGNTNNPAGSNVTAANVQSFPGVNTLGVSMARIDYAPGGQNPPHTHPRATEIIFVLEGVLEVGFITTANKLFTKTVTAGEVFVFPRGLV 154          
BLAST of BQ624084 vs. ExPASy Swiss-Prot
Match: GL33_ORYSJ (Germin-like protein 3-3 OS=Oryza sativa subsp. japonica GN=Os03g0693700 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.811e-19
Identity = 53/138 (38.41%), Postives = 70/138 (50.72%), Query Frame = 1
Query:  121 RASDPDPLQDVCIADLNAPISINGFPCKPASNVXXXXXXXXXXXXXXXXXVFKRA--VTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGI---XXXXXXXXXXXXXXXXFFSKVLTPGMGFLIARALV 519
            RA+DPDPLQD C+ADL++ +++NG+PCKP                            VT  DV G+P VNT GVS+ R+D   GG NPPH HPR TE GI                   ++S+V+  G  F+I R L+
Sbjct:   25 RANDPDPLQDFCVADLDSEVTLNGYPCKPTPAAGDEFLFSSRLATGGDVNANPNGSNVTQLDVAGWPGVNTLGVSMNRIDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGSLDTGNRYYSRVVRGGETFVIPRGLM 162          
BLAST of BQ624084 vs. ExPASy Swiss-Prot
Match: GL35_ORYSJ (Germin-like protein 3-5 OS=Oryza sativa subsp. japonica GN=Os03g0693900 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.214e-18
Identity = 55/142 (38.73%), Postives = 69/142 (48.59%), Query Frame = 1
Query:  109 PFPSRASDPDPLQDVCIADLNAPISINGFPCKPASNVXXXXXXXXXXXXXXXXXVFKRA--VTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGI---XXXXXXXXXXXXXXXXFFSKVLTPGMGFLIARALV 519
            P   RA+D DPLQD C+ADLN+ +++NG  CKPAS                          VT  DV  +P VNT GVS+ R+D   GG NPPH HPR TE GI                   ++SKV+  G  F+I R L+
Sbjct:   21 PVLIRATDADPLQDFCVADLNSEVTVNGHACKPASAAGDEFLFSSKIATGGDVNANPNGSNVTELDVAEWPGVNTLGVSMNRVDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGTLDTGNRYYSKVVRAGETFVIPRGLM 162          
BLAST of BQ624084 vs. ExPASy Swiss-Prot
Match: GL36_ORYSJ (Germin-like protein 3-6 OS=Oryza sativa subsp. japonica GN=Os03g0694000 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.601e-17
Identity = 54/142 (38.03%), Postives = 69/142 (48.59%), Query Frame = 1
Query:  109 PFPSRASDPDPLQDVCIADLNAPISINGFPCKPASNVXXXXXXXXXXXXXXXXXVFKRA--VTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGI---XXXXXXXXXXXXXXXXFFSKVLTPGMGFLIARALV 519
            P   RA+D DPLQD C+ADL++ +++NG  CKPAS                          VT  DV  +P VNT GVS+ R+D   GG NPPH HPR TE GI                   ++SKV+  G  F+I R L+
Sbjct:   23 PVLIRATDADPLQDFCVADLDSKVTVNGHACKPASAAGDEFLFSSKIATGGDVNANPNGSNVTELDVAEWPGVNTLGVSMNRVDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGTLDTGNRYYSKVVRAGETFVIPRGLM 164          
BLAST of BQ624084 vs. ExPASy Swiss-Prot
Match: GL34_ORYSJ (Putative germin-like protein 3-4 OS=Oryza sativa subsp. japonica GN=Os03g0693800 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.601e-17
Identity = 54/142 (38.03%), Postives = 69/142 (48.59%), Query Frame = 1
Query:  109 PFPSRASDPDPLQDVCIADLNAPISINGFPCKPASNVXXXXXXXXXXXXXXXXXVFKRA--VTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGI---XXXXXXXXXXXXXXXXFFSKVLTPGMGFLIARALV 519
            P   RA+D DPLQD C+ADL++ +++NG  CKPAS                          VT  DV  +P VNT GVS+ R+D   GG NPPH HPR TE GI                   ++SKV+  G  F+I R L+
Sbjct:   23 PVLIRATDADPLQDFCVADLDSKVTVNGHACKPASAAGDEFLFSSKIATGGDVNANPNGSNVTELDVAEWPGVNTLGVSMNRVDFAPGGTNPPHVHPRATEVGIVLRGELLVGIIGTLDMGNRYYSKVVRAGETFVIPRGLM 164          
BLAST of BQ624084 vs. ExPASy Swiss-Prot
Match: GL21_ARATH (Germin-like protein subfamily 2 member 1 OS=Arabidopsis thaliana GN=GLP4 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.601e-17
Identity = 47/99 (47.47%), Postives = 57/99 (57.58%), Query Frame = 1
Query:  112 FPSRASDPDPLQDVCIADLNAPISINGFPCKPASNVXXXXXXXXXXXXXXXXX-VFKRAVTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTE 405
            F S ++DPD LQD+C+ADL + I INGFPCK A+ V                   F   VT  +V   P +NT GVSL R+D   GG+NPPHTHPR TE
Sbjct:   18 FISSSADPDMLQDLCVADLPSGIKINGFPCKDAATVTSADFFSQGLAKPGLTNNTFGALVTGANVMTIPGLNTLGVSLSRIDYAPGGLNPPHTHPRATE 116          
BLAST of BQ624084 vs. ExPASy Swiss-Prot
Match: GL52_ORYSJ (Germin-like protein 5-1 OS=Oryza sativa subsp. japonica GN=Os05g0277500 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.091e-17
Identity = 48/137 (35.04%), Postives = 66/137 (48.18%), Query Frame = 1
Query:  109 PFPSRASDPDPLQDVCIADLNAPISINGFPCKPASNVXXXXXXXXXXXXXXXXXVFKRAVTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGIXXXXXXXXXXXXXXXXFFSKVLTPGMGFLIARALV 519
            P PS A DPD LQD+C+ADL + + +NGF CK A+                    +   VT  +V   P +NT GVS+ R+D   GG+NPPHTHPR TE                    ++K ++ G  F+  R L+
Sbjct:   20 PTPSTAGDPDLLQDICVADLTSAVKVNGFACK-AAVTEDDFYFKGLAAAGNTNNTYGSVVTGANVEKLPGLNTLGVSMSRIDYAPGGLNPPHTHPRATEMVFVLQGTLDVGFITTANKLYTKTISAGDVFVFPRGLL 155          
BLAST of BQ624084 vs. ExPASy Swiss-Prot
Match: OXO2_HORVU (Oxalate oxidase 2 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.659e-17
Identity = 55/137 (40.15%), Postives = 66/137 (48.18%), Query Frame = 1
Query:  124 ASDPDPLQDVCIADLNAP-ISINGFPCKPASNVXXXXXXXXXXXXXXXXXVFK-RAVTFGDVFGFPAVNTQGVSLFRLDLDVGGINPPHTHPRGTEAGI---XXXXXXXXXXXXXXXXFFSKVLTPGMGFLIARALV 519
            ASDPDPLQD C+ADL+   +S+NG PCKP S                        AVT  DV  +P  NT GVS+ R+D   GG NPPH HPR TE GI                    +S+V+  G  FLI R L+
Sbjct:   23 ASDPDPLQDFCVADLDGKAVSVNGHPCKPMSEAGDDFLFSSKLAKAGNTSTPNGSAVTELDVAEWPGTNTLGVSMNRVDFAPGGTNPPHVHPRATEIGIVMKGELLVGILGSLDSGNKLYSRVVRAGETFLIPRGLM 159          
The following BLAST results are available for this feature:
BLAST of BQ624084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
GLT1_ARATH1.711e-1939.86Germin-like protein subfamily T member 1 OS=Arabid... [more]
GLT2_ARATH2.234e-1939.01Germin-like protein subfamily T member 2 OS=Arabid... [more]
GL11_ORYSJ2.918e-1940.74Germin-like protein 1-1 OS=Oryza sativa subsp. jap... [more]
GL33_ORYSJ3.811e-1938.41Germin-like protein 3-3 OS=Oryza sativa subsp. jap... [more]
GL35_ORYSJ4.214e-1838.73Germin-like protein 3-5 OS=Oryza sativa subsp. jap... [more]
GL36_ORYSJ1.601e-1738.03Germin-like protein 3-6 OS=Oryza sativa subsp. jap... [more]
GL34_ORYSJ1.601e-1738.03Putative germin-like protein 3-4 OS=Oryza sativa s... [more]
GL21_ARATH1.601e-1747.47Germin-like protein subfamily 2 member 1 OS=Arabid... [more]
GL52_ORYSJ2.091e-1735.04Germin-like protein 5-1 OS=Oryza sativa subsp. jap... [more]
OXO2_HORVU4.659e-1740.15Oxalate oxidase 2 OS=Hordeum vulgare PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_01175 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01175 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ624084 ID=BQ624084; Name=BQ624084; organism=Citrus sinensis; type=EST; length=540bp
CTGCAGCCAAAAATTGTGTAATTTCAGATTTTAACCACAGCCATGATATC
TTCTTCCTCAATGTCACTCTTTGGGCTGCTATGCGGCCTGATAGTACTAC
TGATGCTCCCTTTCCCTTCCCGTGCAAGTGACCCTGACCCTTTACAAGAC
GTCTGTATTGCGGATTTGAATGCCCCCATCTCTATCAATGGTTTCCCCTG
CAAACCTGCTTCGAACGTAACTTCTGATGATTTCTTCACGGATTTTTCTA
AAGATCCGACCACATTTGACGTCTTTAAGCGTGCAGTCACATTTGGTGAT
GTTTTTGGCTTTCCGGCGGTCAATACTCAAGGAGTTTCACTCTTCCGACT
TGACTTGGATGTCGGCGGAATAAACCCGCCTCATACGCATCCTCGTGGAA
CTGAGGCTGGTATTGTTACCAGAGGAACGTTGCTCGTAGGTTTAGTAACA
ACTAATAATACCTTTTTCTCAAAGGTCTTGACTCCCGGGATGGGGTTCTT
AATTGCTAGAGCACTGGTGACTTGGCACTAAATGTGGGAA
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