BQ624089

Overview
NameBQ624089
Unique NameBQ624089
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length477
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ624089 vs. ExPASy Swiss-Prot
Match: POF21_ARATH (Probable transcription factor PosF21 OS=Arabidopsis thaliana GN=POSF21 PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 1.336e-53
Identity = 114/158 (72.15%), Postives = 123/158 (77.85%), Query Frame = 2
Query:    2 RHQHSQSMDGSTSIKPEMLMSASDEXXXXXXXXXXXXXXXXXXXXIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLTGQAMPNGGPMMNYPSF 475
            RHQHSQSMDGS +I  EMLMS +++                    IDPKRAKRIWANRQSAARSKERK RYI ELERKVQTLQTEAT+LSAQLTLLQRDTNGLT EN+ELKLRLQTMEQQVHLQD LN+ALKEEIQHLKVLTGQ  P+    +NY SF
Sbjct:  156 RHQHSQSMDGSMNIN-EMLMSGNEDDSAIDAKKSMSATKLAELALIDPKRAKRIWANRQSAARSKERKTRYIFELERKVQTLQTEATTLSAQLTLLQRDTNGLTVENNELKLRLQTMEQQVHLQDELNEALKEEIQHLKVLTGQVAPSA---LNYGSF 309          
BLAST of BQ624089 vs. ExPASy Swiss-Prot
Match: RF2A_ORYSJ (Transcription factor RF2a OS=Oryza sativa subsp. japonica GN=RF2a PE=1 SV=1)

HSP 1 Score: 198.364 bits (503), Expect = 1.382e-50
Identity = 109/158 (68.99%), Postives = 117/158 (74.05%), Query Frame = 2
Query:    2 RHQHSQSMDGSTSIKPEMLMSAS---DEXXXXXXXXXXXXXXXXXXXXIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLTGQAMPNGGPMMNY 466
            +HQHS SMD S SIK E L+ AS   +                     +DPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEAT+LSAQL LLQRDT+GLT ENSELKLRLQTMEQQVHLQDALND LK E+Q LKV TGQ    GG MMN+
Sbjct:  132 KHQHSLSMDESMSIKAEELVGASPGTEGMSSAEAKKAVSAAKLAELALVDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATTLSAQLALLQRDTSGLTTENSELKLRLQTMEQQVHLQDALNDTLKSEVQRLKVATGQMANGGGMMMNF 289          
BLAST of BQ624089 vs. ExPASy Swiss-Prot
Match: RF2B_ORYSJ (Transcription factor RF2b OS=Oryza sativa subsp. japonica GN=RF2b PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 3.194e-39
Identity = 87/144 (60.42%), Postives = 102/144 (70.83%), Query Frame = 2
Query:    2 RHQHSQSMDGSTSIKPEMLMSASDEXXXXXXXXXXXXXXXXXXXXIDPKRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNDALKEEIQHLKVLTGQ 433
            +H+HS S+DGS         +A+                      IDPKRAKRI ANRQSAARSKERK RYI ELERKVQTLQTEAT+LSAQLTL QRDT GL+AEN+ELK+RLQ MEQQ  L+DALNDALK+E++ LK+ TG+
Sbjct:   86 KHRHSSSVDGSGFFAAARKDAAASLAEVMEAKKAMTPEQLSDLAAIDPKRAKRILANRQSAARSKERKARYITELERKVQTLQTEATTLSAQLTLFQRDTTGLSAENAELKIRLQAMEQQAQLRDALNDALKQELERLKLATGE 229          
The following BLAST results are available for this feature:
BLAST of BQ624089 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
POF21_ARATH1.336e-5372.15Probable transcription factor PosF21 OS=Arabidopsi... [more]
RF2A_ORYSJ1.382e-5068.99Transcription factor RF2a OS=Oryza sativa subsp. j... [more]
RF2B_ORYSJ3.194e-3960.42Transcription factor RF2b OS=Oryza sativa subsp. j... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_01180 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01180 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ624089 ID=BQ624089; Name=BQ624089; organism=Citrus sinensis; type=EST; length=477bp
TAGACATCAGCACAGCCAGTCAATGGATGGTTCGACGAGTATTAAGCCAG
AAATGCTCATGTCAGCTTCAGATGAGGCGCCTTCTGCTGATTCGAAGAAA
GCTATGTCTGCTGCTAAGCTTGCTGAACTAGCACTCATTGATCCAAAGCG
TGCAAAGAGAATCTGGGCAAATAGGCAGTCAGCTGCAAGGTCAAAGGAAA
GGAAGATGCGATACATAGCTGAGCTTGAACGTAAAGTACAGACATTACAA
ACTGAAGCAACCTCATTGTCTGCTCAATTGACATTATTGCAGAGAGATAC
TAATGGTCTGACTGCTGAAAATAGTGAATTGAAACTGCGTTTGCAAACGA
TGGAGCAACAAGTCCACTTGCAAGATGCACTAAATGATGCACTGAAGGAG
GAGATTCAGCATCTGAAGGTATTGACTGGCCAAGCAATGCCTAATGGTGG
ACCAATGATGAACTATCCGTCTTTTGG
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