BQ624104

Overview
NameBQ624104
Unique NameBQ624104
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12421 contig Csv1_Contig12421:1529..2234. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ624104 vs. ExPASy Swiss-Prot
Match: ZDS_CAPAN (Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Capsicum annuum GN=ZDS PE=1 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 5.072e-72
Identity = 135/158 (85.44%), Postives = 146/158 (92.41%), Query Frame = 3
Query:    3 CFADLALTSPEDYYREGQGSLLQCVLTPGDPYMPLPNDEIIRRVAKQVLALFPSSQGLEVIWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV 476
            CFADLAL SPEDYY EGQGSLLQCVLTPGDPYMPLPN+EIIRRV+KQVLALFPSSQGLEV WSSVVKIGQSLYREGPGKDPFRPDQKTPV+NFFLAGSYTKQDYIDSMEGATLSGRQASAYIC+AGE+L+ALRK++AA E  E +    + +DELSLV
Sbjct:  432 CFADLALASPEDYYIEGQGSLLQCVLTPGDPYMPLPNEEIIRRVSKQVLALFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQKTPVENFFLAGSYTKQDYIDSMEGATLSGRQASAYICDAGEQLLALRKKIAAAELNE-ISKGVSLSDELSLV 588          
BLAST of BQ624104 vs. ExPASy Swiss-Prot
Match: ZDS_TARER (Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Tagetes erecta PE=2 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 1.927e-71
Identity = 135/158 (85.44%), Postives = 143/158 (90.51%), Query Frame = 3
Query:    3 CFADLALTSPEDYYREGQGSLLQCVLTPGDPYMPLPNDEIIRRVAKQVLALFPSSQGLEVIWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV 476
            CFADLAL SPEDYY EGQGSLLQCVLTPGDPYMPLPN+EII RV+KQVLALFPSSQGLEV WSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGRQASA+IC+AGEEL ALRKQLAA +S + +       DE+SLV
Sbjct:  435 CFADLALASPEDYYIEGQGSLLQCVLTPGDPYMPLPNEEIISRVSKQVLALFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGRQASAFICDAGEELAALRKQLAAIQSIDSIGV-----DEMSLV 587          
BLAST of BQ624104 vs. ExPASy Swiss-Prot
Match: ZDS_NARPS (Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Narcissus pseudonarcissus GN=ZDS1 PE=2 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 8.098e-70
Identity = 128/158 (81.01%), Postives = 142/158 (89.87%), Query Frame = 3
Query:    3 CFADLALTSPEDYYREGQGSLLQCVLTPGDPYMPLPNDEIIRRVAKQVLALFPSSQGLEVIWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV 476
            CF+DLAL+SPEDYY EGQGSL+Q VLTPGDPYMPLPND II RV KQVL LFPSSQGLEV+WSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGRQA+AYIC+AGE+L ALRK++AA   ++ +   +  +DELSLV
Sbjct:  417 CFSDLALSSPEDYYIEGQGSLIQAVLTPGDPYMPLPNDAIIERVRKQVLDLFPSSQGLEVLWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGRQAAAYICSAGEDLAALRKKIAADHPEQLINKDSNVSDELSLV 574          
BLAST of BQ624104 vs. ExPASy Swiss-Prot
Match: ZDS_SOLLC (Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Solanum lycopersicum GN=ZDS PE=2 SV=1)

HSP 1 Score: 263.077 bits (671), Expect = 1.058e-69
Identity = 130/158 (82.28%), Postives = 142/158 (89.87%), Query Frame = 3
Query:    3 CFADLALTSPEDYYREGQGSLLQCVLTPGDPYMPLPNDEIIRRVAKQVLALFPSSQGLEVIWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV 476
            CFADLAL SP+DYY EGQGSLLQCVLTPGDPYMPL NDEII+RV KQVLALFPSSQGLEV WSSV+KIGQSLYREGPGKDPFRPDQKTPV+NFFLAGSYTKQDYIDSMEGATLSGRQASAYICN GE+L+ALRK++ A E  + +    + +DELSLV
Sbjct:  432 CFADLALASPDDYYIEGQGSLLQCVLTPGDPYMPLSNDEIIKRVTKQVLALFPSSQGLEVTWSSVLKIGQSLYREGPGKDPFRPDQKTPVENFFLAGSYTKQDYIDSMEGATLSGRQASAYICNVGEQLMALRKKITAAELND-ISKGVSLSDELSLV 588          
BLAST of BQ624104 vs. ExPASy Swiss-Prot
Match: ZDS_ARATH (Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Arabidopsis thaliana GN=ZDS1 PE=2 SV=3)

HSP 1 Score: 240.736 bits (613), Expect = 5.621e-63
Identity = 120/158 (75.95%), Postives = 132/158 (83.54%), Query Frame = 3
Query:    3 CFADLALTSPEDYYREGQGSLLQCVLTPGDPYMPLPNDEIIRRVAKQVLALFPSSQGLEVIWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGRQASAYICNAGEELVALRKQLAAFESQEQMEAPTTTNDELSLV 476
            CFADLAL SP DYY EGQG+LLQCVLTPGDPYM +PND+II +VA QV  LFPSS+GLEV WSSVVKI QSLYRE PGKDPFRPDQKTP+KNFFLAGSYTKQDYIDSMEGATLSGRQAS+YIC+AGEEL  L K+L++        + T   DELSLV
Sbjct:  409 CFADLALASPADYYIEGQGTLLQCVLTPGDPYMRMPNDKIIEKVAMQVTELFPSSRGLEVTWSSVVKIAQSLYREAPGKDPFRPDQKTPIKNFFLAGSYTKQDYIDSMEGATLSGRQASSYICDAGEELAELNKKLSS--------SATAVPDELSLV 558          
BLAST of BQ624104 vs. ExPASy Swiss-Prot
Match: ZDS_MAIZE (Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Zea mays GN=ZDS1 PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 2.136e-62
Identity = 114/145 (78.62%), Postives = 129/145 (88.97%), Query Frame = 3
Query:    3 CFADLALTSPEDYYREGQGSLLQCVLTPGDPYMPLPNDEIIRRVAKQVLALFPSSQGLEVIWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGRQASAYICNAGEELVALRKQLAAFESQEQM 437
            CF+DLAL+SP DYY EGQGSL+Q VLTPGDPYMPLPN+EII +V KQV+ LFPSS+GLEV WSSVVKIGQSLYRE PG DPFRPDQKTPVKNFFL+GSYTKQDYIDSMEGATLSGR+ SAYIC AGEEL+ALRK+L   + ++ +
Sbjct:  417 CFSDLALSSPADYYIEGQGSLIQAVLTPGDPYMPLPNEEIISKVQKQVVELFPSSRGLEVTWSSVVKIGQSLYREAPGNDPFRPDQKTPVKNFFLSGSYTKQDYIDSMEGATLSGRRTSAYICGAGEELLALRKKLLIDDGEKAL 561          
BLAST of BQ624104 vs. ExPASy Swiss-Prot
Match: ZDS_ANASP (Zeta-carotene desaturase OS=Anabaena sp. (strain PCC 7120) GN=crtQ PE=3 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 5.844e-44
Identity = 85/122 (69.67%), Postives = 100/122 (81.97%), Query Frame = 3
Query:    3 CFADLALTSPEDYYREGQGSLLQCVLTPGDPYMPLPNDEIIRRVAKQVLALFPSSQGLEVIWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGRQASAYI 368
            CFADLALTSP DYYR+GQGSLLQ VLTPGDP++   N+ I + V KQV  LFPSS+ L + W SVVK+ QSLYRE PG D +RP+QKTP+ NFFLAGSYT+QDYIDSMEGAT+SGR+A+  I
Sbjct:  352 CFADLALTSPSDYYRQGQGSLLQLVLTPGDPFIKESNEAIAQHVLKQVYELFPSSRELNMTWYSVVKLAQSLYREAPGMDVYRPNQKTPIANFFLAGSYTQQDYIDSMEGATVSGRRAAKVI 473          
BLAST of BQ624104 vs. ExPASy Swiss-Prot
Match: ZDS_SYNY3 (Zeta-carotene desaturase OS=Synechocystis sp. (strain PCC 6803) GN=crtQ PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.632e-44
Identity = 87/122 (71.31%), Postives = 97/122 (79.51%), Query Frame = 3
Query:    3 CFADLALTSPEDYYREGQGSLLQCVLTPGDPYMPLPNDEIIRRVAKQVLALFPSSQGLEVIWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGRQASAYI 368
            CFADLALTSP DYYR G+GSLLQ VLTPGDP+M   N+ I  RV KQV ALFPS+  L + W SV+K+ QSLYRE PG D FRP Q TP+ NFFLAGSYT+QDYIDSMEGATLSGRQA+  I
Sbjct:  353 CFADLALTSPADYYRPGEGSLLQLVLTPGDPFMKESNEAIAYRVLKQVKALFPSAADLNMTWYSVIKLAQSLYREAPGMDLFRPSQATPIANFFLAGSYTQQDYIDSMEGATLSGRQAAQAI 474          
BLAST of BQ624104 vs. ExPASy Swiss-Prot
Match: CRTI_SOLLC (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Solanum lycopersicum GN=PDS PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.089e-17
Identity = 51/134 (38.06%), Postives = 78/134 (58.21%), Query Frame = 3
Query:    6 FADLALTSPEDYYREGQGSLLQCVLTPGDPYMPLPNDEIIRRVAKQVLALFPSSQGLE-----VIWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGRQASAYICNAGEELV 392
            +AD+++T  E YY   Q S+L+ V  P + ++   + EII    K++  LFP     +     ++   VVK  +S+Y+  PG +P RP Q++P++ F+LAG YTKQ Y+ SMEGA LSG+  +  I    E LV
Sbjct:  439 YADMSVTCKE-YYNPNQ-SMLELVFAPAEEWISRSDSEIIDATMKELATLFPDEISADQSKAKILKYHVVKTPRSVYKTVPGCEPCRPLQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQDYELLV 570          
BLAST of BQ624104 vs. ExPASy Swiss-Prot
Match: CRTI_SOYBN (Phytoene dehydrogenase, chloroplastic/chromoplastic OS=Glycine max GN=PDS1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.772e-16
Identity = 51/139 (36.69%), Postives = 81/139 (58.27%), Query Frame = 3
Query:    6 FADLALTSPEDYYREGQGSLLQCVLTPGDPYMPLPNDEIIRRVAKQVLALFPSSQGLE-----VIWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLAGSYTKQDYIDSMEGATLSGRQASAYICNAGEELVALRKQ 407
            +AD+++T  E YY   Q S+L+ V  P + ++   +D+II+    ++  LFP     +     ++   VVK  +S+Y+  P  +P RP Q++P++ F+LAG YTKQ Y+ SMEGA LSG+  +  I     EL+A R Q
Sbjct:  426 YADMSVTCKE-YYSPNQ-SMLELVFAPAEEWISRSDDDIIQATMTELAKLFPDEISADQSKAKILKYHVVKTPRSVYKTVPNCEPCRPIQRSPIEGFYLAGDYTKQKYLASMEGAVLSGKLCAQAIVQ-DSELLATRGQ 561          
The following BLAST results are available for this feature:
BLAST of BQ624104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
ZDS_CAPAN5.072e-7285.44Zeta-carotene desaturase, chloroplastic/chromoplas... [more]
ZDS_TARER1.927e-7185.44Zeta-carotene desaturase, chloroplastic/chromoplas... [more]
ZDS_NARPS8.098e-7081.01Zeta-carotene desaturase, chloroplastic/chromoplas... [more]
ZDS_SOLLC1.058e-6982.28Zeta-carotene desaturase, chloroplastic/chromoplas... [more]
ZDS_ARATH5.621e-6375.95Zeta-carotene desaturase, chloroplastic/chromoplas... [more]
ZDS_MAIZE2.136e-6278.62Zeta-carotene desaturase, chloroplastic/chromoplas... [more]
ZDS_ANASP5.844e-4469.67Zeta-carotene desaturase OS=Anabaena sp. (strain P... [more]
ZDS_SYNY37.632e-4471.31Zeta-carotene desaturase OS=Synechocystis sp. (str... [more]
CRTI_SOLLC6.089e-1738.06Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]
CRTI_SOYBN1.772e-1636.69Phytoene dehydrogenase, chloroplastic/chromoplasti... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_01195 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01195 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ624104 ID=BQ624104; Name=BQ624104; organism=Citrus sinensis; type=EST; length=706bp
CTTGCTTTGCAGATCTAGCACTCACTTCACCAGAAGACTACTACAGAGAA
GGGCAAGGTTCATTACTCCAATGTGTTTTGACGCCTGGCGATCCTTACAT
GCCCTTACCAAATGATGAAATCATAAGGAGAGTGGCAAAGCAGGTTTTAG
CTCTATTTCCATCATCCCAAGGTTTAGAAGTTATTTGGTCGTCTGTTGTC
AAAATCGGGCAATCTTTGTACCGTGAGGGACCTGGTAAAGACCCCTTCAG
ACCTGATCAAAAGACACCTGTGAAGAACTTCTTCCTTGCTGGCTCATATA
CAAAACAGGATTACATAGATAGTATGGAAGGAGCAACTTTGTCTGGTAGA
CAAGCCTCAGCCTACATATGCAATGCCGGGGAAGAATTAGTAGCACTGAG
GAAGCAGCTTGCTGCCTTTGAATCTCAAGAACAAATGGAAGCTCCAACTA
CTACTAACGATGAACTAAGTCTTGTGTGATCACAATCTGTTTGAGGCGCA
GCGGCAGGAGTAAGGTTTTTCCACATCTAAACGCCCTTCACTTTTTCAGG
ATTACATTGATAGTATGGGATGAGCAATTTGCTGCCTTAATTTGAATCTC
AAGAACAAATGGAAAATCCAGCTTTTACTGATGAGATGATGCAGCTGGAG
TAAGGGTTTCCAATACCTATGTAATTTCATGAGATAGCCAATTTTCATAA
AATTCA
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