BQ624114

Overview
NameBQ624114
Unique NameBQ624114
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length564
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig888 contig Csv1_Contig888:7..569. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ624114 vs. ExPASy Swiss-Prot
Match: RS14_LUPLU (40S ribosomal protein S14 OS=Lupinus luteus GN=RPS14 PE=2 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 7.492e-55
Identity = 105/124 (84.68%), Postives = 107/124 (86.29%), Query Frame = 3 
Query:   78 MSRRKNREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMK 449
            MSRRK R+ KEE VTLGPAV DGEHVFGVA IFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDV+TRCKELGITALHIKLRA            AQSALRALARSGMK
Sbjct:    1 MSRRKVRDTKEETVTLGPAVSDGEHVFGVARIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVATRCKELGITALHIKLRATGGNKTKTPGRGAQSALRALARSGMK 124

HSP 2 Score: 35.4242 bits (80), Expect = 7.492e-55
Identity = 16/18 (88.89%), Postives = 17/18 (94.44%), Query Frame = 1 
Query:  442 G*KIGRIEDVTPIPTDST 495
            G KIGRIEDVTPIP+DST
Sbjct:  122 GMKIGRIEDVTPIPSDST 139
[Close]
BLAST of BQ624114 vs. ExPASy Swiss-Prot
Match: RS143_ARATH (40S ribosomal protein S14-3 OS=Arabidopsis thaliana GN=RPS14C PE=2 SV=2)

HSP 1 Score: 197.593 bits (501), Expect = 9.767e-55
Identity = 100/124 (80.65%), Postives = 107/124 (86.29%), Query Frame = 3 
Query:   78 MSRRKNREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMK 449
            MS+RK +EPK ENVTLGPAVR+GE VFGV H+FASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDV+ RCKELGITA+H+KLRA            AQSALRALARSGMK
Sbjct:    1 MSKRKTKEPKVENVTLGPAVREGEQVFGVVHVFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITAIHVKLRATGGNKTKTPGPGAQSALRALARSGMK 124

HSP 2 Score: 36.965 bits (84), Expect = 9.767e-55
Identity = 17/18 (94.44%), Postives = 17/18 (94.44%), Query Frame = 1 
Query:  442 G*KIGRIEDVTPIPTDST 495
            G KIGRIEDVTPIPTDST
Sbjct:  122 GMKIGRIEDVTPIPTDST 139
[Close]
BLAST of BQ624114 vs. ExPASy Swiss-Prot
Match: RS141_MAIZE (40S ribosomal protein S14 OS=Zea mays PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 1.660e-54
Identity = 105/124 (84.68%), Postives = 107/124 (86.29%), Query Frame = 3 
Query:   78 MSRRKNREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMK 449
            MSRRK REPKEENV LGP VR+GE VFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDV+ RCKELGITALHIKLRA            AQSALRALARSGMK
Sbjct:    1 MSRRKTREPKEENV-LGPTVREGEFVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMK 123

HSP 2 Score: 36.5798 bits (83), Expect = 1.660e-54
Identity = 16/18 (88.89%), Postives = 17/18 (94.44%), Query Frame = 1 
Query:  442 G*KIGRIEDVTPIPTDST 495
            G KIGRIEDVTP+PTDST
Sbjct:  121 GMKIGRIEDVTPVPTDST 138
[Close]
BLAST of BQ624114 vs. ExPASy Swiss-Prot
Match: RS142_MAIZE (40S ribosomal protein S14 OS=Zea mays PE=3 SV=1)

HSP 1 Score: 196.438 bits (498), Expect = 2.821e-54
Identity = 103/122 (84.43%), Postives = 107/122 (87.70%), Query Frame = 3 
Query:   84 RRKNREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMK 449
            R+K REPKEENV LGPAVR+GEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLA+QDV+ RCKELGITALHIKLRA            AQSALRALARSGMK
Sbjct:    4 RKKTREPKEENV-LGPAVREGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMK 124

HSP 2 Score: 36.5798 bits (83), Expect = 2.821e-54
Identity = 16/18 (88.89%), Postives = 17/18 (94.44%), Query Frame = 1 
Query:  442 G*KIGRIEDVTPIPTDST 495
            G KIGRIEDVTP+PTDST
Sbjct:  122 GMKIGRIEDVTPVPTDST 139
[Close]
BLAST of BQ624114 vs. ExPASy Swiss-Prot
Match: RS142_ARATH (40S ribosomal protein S14-2 OS=Arabidopsis thaliana GN=RPS14B PE=1 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 8.149e-54
Identity = 99/124 (79.84%), Postives = 106/124 (85.48%), Query Frame = 3 
Query:   78 MSRRKNREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMK 449
            MS+RK +EPK E VTLGP+VR+GE VFGV HIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDV+ RCKELGITA+H+KLRA            AQSALRALARSGMK
Sbjct:    1 MSKRKTKEPKVETVTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALARSGMK 124

HSP 2 Score: 36.965 bits (84), Expect = 8.149e-54
Identity = 17/18 (94.44%), Postives = 17/18 (94.44%), Query Frame = 1 
Query:  442 G*KIGRIEDVTPIPTDST 495
            G KIGRIEDVTPIPTDST
Sbjct:  122 GMKIGRIEDVTPIPTDST 139
[Close]
BLAST of BQ624114 vs. ExPASy Swiss-Prot
Match: RS141_ARATH (40S ribosomal protein S14-1 OS=Arabidopsis thaliana GN=RPS14A PE=2 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.999e-53
Identity = 98/124 (79.03%), Postives = 106/124 (85.48%), Query Frame = 3 
Query:   78 MSRRKNREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMK 449
            MS+RK +EPK + VTLGP+VR+GE VFGV HIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDV+ RCKELGITA+H+KLRA            AQSALRALARSGMK
Sbjct:    1 MSKRKTKEPKVDVVTLGPSVREGEQVFGVVHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALARSGMK 124

HSP 2 Score: 36.965 bits (84), Expect = 3.999e-53
Identity = 17/18 (94.44%), Postives = 17/18 (94.44%), Query Frame = 1 
Query:  442 G*KIGRIEDVTPIPTDST 495
            G KIGRIEDVTPIPTDST
Sbjct:  122 GMKIGRIEDVTPIPTDST 139
[Close]
BLAST of BQ624114 vs. ExPASy Swiss-Prot
Match: RS14_CHLRE (40S ribosomal protein S14 OS=Chlamydomonas reinhardtii GN=RPS14 PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 3.280e-49
Identity = 91/120 (75.83%), Postives = 100/120 (83.33%), Query Frame = 3 
Query:   90 KNREPKEENVTLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMK 449
            K  E  +E V+LGP VR+GEHVFGVAHIFASFNDTF+HVTDLSGRET+ R+TGGMKVKADRDESSPYAAMLAAQDV+ +CKELGITALHIKLRA            AQSALRALAR+GMK
Sbjct:    8 KGDEAPKEVVSLGPTVREGEHVFGVAHIFASFNDTFVHVTDLSGRETISRVTGGMKVKADRDESSPYAAMLAAQDVAQKCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARAGMK 127

HSP 2 Score: 36.965 bits (84), Expect = 3.280e-49
Identity = 17/18 (94.44%), Postives = 17/18 (94.44%), Query Frame = 1 
Query:  442 G*KIGRIEDVTPIPTDST 495
            G KIGRIEDVTPIPTDST
Sbjct:  125 GMKIGRIEDVTPIPTDST 142
[Close]
BLAST of BQ624114 vs. ExPASy Swiss-Prot
Match: RS14_PODCA (40S ribosomal protein S14 OS=Podocoryne carnea GN=RPS14 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 3.282e-49
Identity = 93/125 (74.40%), Postives = 104/125 (83.20%), Query Frame = 3 
Query:   78 MSRRKNREPKEENV-TLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMK 449
            M+ RK + PKEE V +LGP V DGE+VFGVAHIFASFNDTF+HVTDLSG+ET+ R+TGGMKVKADRDESSPYAAMLAAQDV+ RCKE+GITALH+KLRA            AQSALRALARSGMK
Sbjct:    1 MAPRKGKAPKEEQVISLGPQVADGENVFGVAHIFASFNDTFVHVTDLSGKETIARVTGGMKVKADRDESSPYAAMLAAQDVAVRCKEIGITALHVKLRATGGNRTKTPGPGAQSALRALARSGMK 125

HSP 2 Score: 33.4982 bits (75), Expect = 3.282e-49
Identity = 15/18 (83.33%), Postives = 16/18 (88.89%), Query Frame = 1 
Query:  442 G*KIGRIEDVTPIPTDST 495
            G KIGRIEDVTPIP+D T
Sbjct:  123 GMKIGRIEDVTPIPSDCT 140
[Close]
BLAST of BQ624114 vs. ExPASy Swiss-Prot
Match: RS14_MOUSE (40S ribosomal protein S14 OS=Mus musculus GN=Rps14 PE=2 SV=3)

HSP 1 Score: 179.104 bits (453), Expect = 9.473e-49
Identity = 93/125 (74.40%), Postives = 103/125 (82.40%), Query Frame = 3 
Query:   78 MSRRKNREPKEENV-TLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMK 449
            M+ RK +E KEE V +LGP V +GE+VFGV HIFASFNDTF+HVTDLSG+ET+ R+TGGMKVKADRDESSPYAAMLAAQDV+ RCKELGITALHIKLRA            AQSALRALARSGMK
Sbjct:    1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMK 125

HSP 2 Score: 35.4242 bits (80), Expect = 9.473e-49
Identity = 16/18 (88.89%), Postives = 17/18 (94.44%), Query Frame = 1 
Query:  442 G*KIGRIEDVTPIPTDST 495
            G KIGRIEDVTPIP+DST
Sbjct:  123 GMKIGRIEDVTPIPSDST 140
[Close]
BLAST of BQ624114 vs. ExPASy Swiss-Prot
Match: RS14_HUMAN (40S ribosomal protein S14 OS=Homo sapiens GN=RPS14 PE=1 SV=3)

HSP 1 Score: 179.104 bits (453), Expect = 9.473e-49
Identity = 93/125 (74.40%), Postives = 103/125 (82.40%), Query Frame = 3 
Query:   78 MSRRKNREPKEENV-TLGPAVRDGEHVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMK 449
            M+ RK +E KEE V +LGP V +GE+VFGV HIFASFNDTF+HVTDLSG+ET+ R+TGGMKVKADRDESSPYAAMLAAQDV+ RCKELGITALHIKLRA            AQSALRALARSGMK
Sbjct:    1 MAPRKGKEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMK 125

HSP 2 Score: 35.4242 bits (80), Expect = 9.473e-49
Identity = 16/18 (88.89%), Postives = 17/18 (94.44%), Query Frame = 1 
Query:  442 G*KIGRIEDVTPIPTDST 495
            G KIGRIEDVTPIP+DST
Sbjct:  123 GMKIGRIEDVTPIPSDST 140
The following BLAST results are available for this feature:
BLAST of BQ624114 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS14_LUPLU7.492e-5584.6840S ribosomal protein S14 OS=Lupinus luteus GN=RPS... [more]
RS143_ARATH9.767e-5580.6540S ribosomal protein S14-3 OS=Arabidopsis thalian... [more]
RS141_MAIZE1.660e-5484.6840S ribosomal protein S14 OS=Zea mays PE=3 SV=1[more]
RS142_MAIZE2.821e-5484.4340S ribosomal protein S14 OS=Zea mays PE=3 SV=1[more]
RS142_ARATH8.149e-5479.8440S ribosomal protein S14-2 OS=Arabidopsis thalian... [more]
RS141_ARATH3.999e-5379.0340S ribosomal protein S14-1 OS=Arabidopsis thalian... [more]
RS14_CHLRE3.280e-4975.8340S ribosomal protein S14 OS=Chlamydomonas reinhar... [more]
RS14_PODCA3.282e-4974.4040S ribosomal protein S14 OS=Podocoryne carnea GN=... [more]
RS14_MOUSE9.473e-4974.4040S ribosomal protein S14 OS=Mus musculus GN=Rps14... [more]
RS14_HUMAN9.473e-4974.4040S ribosomal protein S14 OS=Homo sapiens GN=RPS14... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_01205 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01205 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ624114 ID=BQ624114; Name=BQ624114; organism=Citrus sinensis; type=EST; length=564bp
TGTTTAGGGTTTTCACATTTTCCTTTCGTCTAGGAACAAACCCTAGCCTT
CTCAATCCATCTCGTGTTTTCGCAGGCATGTCGAGGAGAAAGAATAGGGA
GCCTAAGGAAGAGAATGTGACTCTAGGACCTGCTGTGAGAGATGGGGAGC
ATGTTTTTGGAGTTGCCCACATCTTTGCATCGTTCAATGATACATTTATT
CATGTGACTGATCTGTCAGGCAGAGAAACCCTTGTCCGTATCACTGGTGG
TATGAAGGTGAAAGCTGACCGAGATGAGTCCTCTCCATACGCTGCCATGC
TTGCAGCACAAGATGTTTCAACCAGATGCAAGGAGCTTGGAATCACTGCT
CTTCATATTAAGCTGCGTGCTACTGGTGGGAACAAAACCAAAACACCTGG
TCCAGGTGCCCAGTCTGCTCTTCGTGCCCTTGCTCGTTCTGGGATGAAAA
ATTGGTCGCATAGAGGATGTGACCCCTATTCCCACTGATAGCACACGCAG
AAAGGGTGGTAGAAGAGGAAGAAGGCTTTAAGCTGTGTTGGTTGTCCCAT
TGGCTTGTTTTATG
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