BQ624119

Overview
NameBQ624119
Unique NameBQ624119
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length580
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7289 contig Csv1_Contig7289:1316..1895. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ624119 vs. ExPASy Swiss-Prot
Match: YCF72_ORYSJ (Uncharacterized protein ycf72 OS=Oryza sativa subsp. japonica GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.018e-47
Identity = 82/95 (86.32%), Postives = 84/95 (88.42%), Query Frame = -1 
Query:  296 LTTGRFPSQHLDPALPKLLWFAPTFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVISMLCMAVPKGISVEVDSSF 580
            LTTGR PSQHLDPALPKL WF PT PTCPTVA+QF D KRTSP+GN  VAD PSFAISFATAPAALANCPP P VISMLCMAVPKGISVEVDSSF
Sbjct:   21 LTTGRLPSQHLDPALPKLFWFTPTLPTCPTVAKQFWDTKRTSPDGNLKVADLPSFAISFATAPAALANCPPLPRVISMLCMAVPKGISVEVDSSF 115

HSP 2 Score: 38.1206 bits (87), Expect = 1.018e-47
Identity = 16/21 (76.19%), Postives = 19/21 (90.48%), Query Frame = -3 
Query:  231 INQNPFPNRTSFFQSIRLSGC 293
            +++NPFPN TSFFQSIRLS C
Sbjct:  116 LSKNPFPNCTSFFQSIRLSRC 136
[Close]
BLAST of BQ624119 vs. ExPASy Swiss-Prot
Match: YCF72_ORYSI (Uncharacterized protein ycf72 OS=Oryza sativa subsp. indica GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.018e-47
Identity = 82/95 (86.32%), Postives = 84/95 (88.42%), Query Frame = -1 
Query:  296 LTTGRFPSQHLDPALPKLLWFAPTFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVISMLCMAVPKGISVEVDSSF 580
            LTTGR PSQHLDPALPKL WF PT PTCPTVA+QF D KRTSP+GN  VAD PSFAISFATAPAALANCPP P VISMLCMAVPKGISVEVDSSF
Sbjct:   21 LTTGRLPSQHLDPALPKLFWFTPTLPTCPTVAKQFWDTKRTSPDGNLKVADLPSFAISFATAPAALANCPPLPRVISMLCMAVPKGISVEVDSSF 115

HSP 2 Score: 38.1206 bits (87), Expect = 1.018e-47
Identity = 16/21 (76.19%), Postives = 19/21 (90.48%), Query Frame = -3 
Query:  231 INQNPFPNRTSFFQSIRLSGC 293
            +++NPFPN TSFFQSIRLS C
Sbjct:  116 LSKNPFPNCTSFFQSIRLSRC 136
[Close]
BLAST of BQ624119 vs. ExPASy Swiss-Prot
Match: YCF72_ORYSA (Uncharacterized protein ycf72 OS=Oryza sativa GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.018e-47
Identity = 82/95 (86.32%), Postives = 84/95 (88.42%), Query Frame = -1 
Query:  296 LTTGRFPSQHLDPALPKLLWFAPTFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVISMLCMAVPKGISVEVDSSF 580
            LTTGR PSQHLDPALPKL WF PT PTCPTVA+QF D KRTSP+GN  VAD PSFAISFATAPAALANCPP P VISMLCMAVPKGISVEVDSSF
Sbjct:   21 LTTGRLPSQHLDPALPKLFWFTPTLPTCPTVAKQFWDTKRTSPDGNLKVADLPSFAISFATAPAALANCPPLPRVISMLCMAVPKGISVEVDSSF 115

HSP 2 Score: 38.1206 bits (87), Expect = 1.018e-47
Identity = 16/21 (76.19%), Postives = 19/21 (90.48%), Query Frame = -3 
Query:  231 INQNPFPNRTSFFQSIRLSGC 293
            +++NPFPN TSFFQSIRLS C
Sbjct:  116 LSKNPFPNCTSFFQSIRLSRC 136
[Close]
BLAST of BQ624119 vs. ExPASy Swiss-Prot
Match: YCF72_ORYNI (Uncharacterized protein ycf72 OS=Oryza nivara GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.018e-47
Identity = 82/95 (86.32%), Postives = 84/95 (88.42%), Query Frame = -1 
Query:  296 LTTGRFPSQHLDPALPKLLWFAPTFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVISMLCMAVPKGISVEVDSSF 580
            LTTGR PSQHLDPALPKL WF PT PTCPTVA+QF D KRTSP+GN  VAD PSFAISFATAPAALANCPP P VISMLCMAVPKGISVEVDSSF
Sbjct:   21 LTTGRLPSQHLDPALPKLFWFTPTLPTCPTVAKQFWDTKRTSPDGNLKVADLPSFAISFATAPAALANCPPLPRVISMLCMAVPKGISVEVDSSF 115

HSP 2 Score: 38.1206 bits (87), Expect = 1.018e-47
Identity = 16/21 (76.19%), Postives = 19/21 (90.48%), Query Frame = -3 
Query:  231 INQNPFPNRTSFFQSIRLSGC 293
            +++NPFPN TSFFQSIRLS C
Sbjct:  116 LSKNPFPNCTSFFQSIRLSRC 136
[Close]
BLAST of BQ624119 vs. ExPASy Swiss-Prot
Match: YCF72_SACOF (Uncharacterized protein ycf72 OS=Saccharum officinarum GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 3.830e-47
Identity = 81/95 (85.26%), Postives = 84/95 (88.42%), Query Frame = -1 
Query:  296 LTTGRFPSQHLDPALPKLLWFAPTFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVISMLCMAVPKGISVEVDSSF 580
            LTTGR PSQHLDPALPKL WF PT PTCPTVA+QF D KRTSP+GN  VA+ PSFAISFATAPAALANCPP P VISMLCMAVPKGISVEVDSSF
Sbjct:   21 LTTGRLPSQHLDPALPKLFWFTPTLPTCPTVAKQFWDTKRTSPDGNLKVANLPSFAISFATAPAALANCPPLPRVISMLCMAVPKGISVEVDSSF 115

HSP 2 Score: 38.1206 bits (87), Expect = 3.830e-47
Identity = 16/21 (76.19%), Postives = 19/21 (90.48%), Query Frame = -3 
Query:  231 INQNPFPNRTSFFQSIRLSGC 293
            +++NPFPN TSFFQSIRLS C
Sbjct:  116 LSKNPFPNCTSFFQSIRLSRC 136
[Close]
BLAST of BQ624119 vs. ExPASy Swiss-Prot
Match: YCF72_SACHY (Uncharacterized protein ycf72 OS=Saccharum hybrid GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 3.830e-47
Identity = 81/95 (85.26%), Postives = 84/95 (88.42%), Query Frame = -1 
Query:  296 LTTGRFPSQHLDPALPKLLWFAPTFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVISMLCMAVPKGISVEVDSSF 580
            LTTGR PSQHLDPALPKL WF PT PTCPTVA+QF D KRTSP+GN  VA+ PSFAISFATAPAALANCPP P VISMLCMAVPKGISVEVDSSF
Sbjct:   21 LTTGRLPSQHLDPALPKLFWFTPTLPTCPTVAKQFWDTKRTSPDGNLKVANLPSFAISFATAPAALANCPPLPRVISMLCMAVPKGISVEVDSSF 115

HSP 2 Score: 38.1206 bits (87), Expect = 3.830e-47
Identity = 16/21 (76.19%), Postives = 19/21 (90.48%), Query Frame = -3 
Query:  231 INQNPFPNRTSFFQSIRLSGC 293
            +++NPFPN TSFFQSIRLS C
Sbjct:  116 LSKNPFPNCTSFFQSIRLSRC 136
[Close]
BLAST of BQ624119 vs. ExPASy Swiss-Prot
Match: YCF72_MAIZE (Uncharacterized protein ycf72 OS=Zea mays GN=ycf72-1 PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 6.506e-47
Identity = 81/95 (85.26%), Postives = 84/95 (88.42%), Query Frame = -1 
Query:  296 LTTGRFPSQHLDPALPKLLWFAPTFPTCPTVAEQFLDIKRTSPEGNFNVADFPSFAISFATAPAALANCPPFPSVISMLCMAVPKGISVEVDSSF 580
            LTTGR PSQHLDPALPKL WF PT PTCPTVA+QF D KRTSP+GN  VA+ PSFAISFATAPAALANCPP P VISMLCMAVPKGISVEVDSSF
Sbjct:   21 LTTGRLPSQHLDPALPKLFWFTPTLPTCPTVAKQFWDTKRTSPDGNLKVANLPSFAISFATAPAALANCPPLPRVISMLCMAVPKGISVEVDSSF 115

HSP 2 Score: 37.3502 bits (85), Expect = 6.506e-47
Identity = 16/20 (80.00%), Postives = 18/20 (90.00%), Query Frame = -3 
Query:  231 NQNPFPNRTSFFQSIRLSGC 290
            ++NPFPN TSFFQSIRLS C
Sbjct:  117 SKNPFPNCTSFFQSIRLSRC 136
[Close]
BLAST of BQ624119 vs. ExPASy Swiss-Prot
Match: RK2_CITSI (50S ribosomal protein L2, chloroplastic OS=Citrus sinensis GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 7.439e-43
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = 3 
Query:  315 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANHKSLGRAGSKCWLGKRPVV 578
            TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGAN KSLGRAGSKCWLGKRPVV
Sbjct:  131 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVV 218
[Close]
BLAST of BQ624119 vs. ExPASy Swiss-Prot
Match: RK2_BUXMI (50S ribosomal protein L2, chloroplastic OS=Buxus microphylla GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 7.439e-43
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = 3 
Query:  315 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANHKSLGRAGSKCWLGKRPVV 578
            TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGAN KSLGRAGSKCWLGKRPVV
Sbjct:  129 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVV 216
[Close]
BLAST of BQ624119 vs. ExPASy Swiss-Prot
Match: RK2_NYMAL (50S ribosomal protein L2, chloroplastic OS=Nymphaea alba GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 1.657e-42
Identity = 86/88 (97.73%), Postives = 87/88 (98.86%), Query Frame = 3 
Query:  315 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQVGNVGANHKSLGRAGSKCWLGKRPVV 578
            TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATL+LPSGEVRLISKNCSATVGQVGNVGAN KSLGRAGSKCWLGKRPVV
Sbjct:  131 TDMPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLRLPSGEVRLISKNCSATVGQVGNVGANQKSLGRAGSKCWLGKRPVV 218
The following BLAST results are available for this feature:
BLAST of BQ624119 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YCF72_ORYSJ1.018e-4786.32Uncharacterized protein ycf72 OS=Oryza sativa subs... [more]
YCF72_ORYSI1.018e-4786.32Uncharacterized protein ycf72 OS=Oryza sativa subs... [more]
YCF72_ORYSA1.018e-4786.32Uncharacterized protein ycf72 OS=Oryza sativa GN=y... [more]
YCF72_ORYNI1.018e-4786.32Uncharacterized protein ycf72 OS=Oryza nivara GN=y... [more]
YCF72_SACOF3.830e-4785.26Uncharacterized protein ycf72 OS=Saccharum officin... [more]
YCF72_SACHY3.830e-4785.26Uncharacterized protein ycf72 OS=Saccharum hybrid ... [more]
YCF72_MAIZE6.506e-4785.26Uncharacterized protein ycf72 OS=Zea mays GN=ycf72... [more]
RK2_CITSI7.439e-4398.8650S ribosomal protein L2, chloroplastic OS=Citrus ... [more]
RK2_BUXMI7.439e-4398.8650S ribosomal protein L2, chloroplastic OS=Buxus m... [more]
RK2_NYMAL1.657e-4297.7350S ribosomal protein L2, chloroplastic OS=Nymphae... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_01210 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01210 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ624119 ID=BQ624119; Name=BQ624119; organism=Citrus sinensis; type=EST; length=580bp
ATATGTGGAAGTATCGACGTAATTTCATAGAGTCATTCGGTCTGAATGCT
ACATGAAGAACATAAGCCAGATGACGGAACGGGAAGACCTAGGATGTAGA
AGATCATAACATGAGTGATTCGGCAGATTTGGATTCCTATATATCCACTC
ATGTGGTACTTCATTATATGATATTGTGGTACTTCATTATATGATATATA
TAAGATCCATCTGTATAGATATCATCATCTACATCCAGAAAGCCGTATGC
TTTGGAAGAAGCTTGTACGGTTTGGGAAGGGGTTTTGATTGATCAAAAAG
ATGAATCTACTTCAACCGATATGCCCTTAGGCACGGCCATACATAACATA
GAAATCACACTTGGAAAGGGTGGACAATTAGCTAGAGCAGCGGGTGCTGT
AGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTT
CTGGGGAGGTCCGTTTGATATCCAAAAACTGCTCAGCAACAGTCGGACAA
GTGGGGAATGTTGGGGCGAACCACAAAAGTTTGGGTAGAGCCGGATCTAA
ATGTTGGCTAGGGAAGCGTCCTGTAGTAAG
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