BQ624122 | Citrus Genome Database

Overview


Name	BQ624122
Unique Name	BQ624122
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	636

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig1583	contig	Csv1_Contig1583:93..727.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of BQ624122 vs. ExPASy Swiss-Prot
Match: MGN_ORYSJ (Protein mago nashi homolog OS=Oryza sativa subsp. japonica GN=Os12g0287200 PE=2 SV=2)

HSP 1 Score: 215.312 bits (547), Expect = 5.977e-72
Identity = 104/111 (93.69%), Postives = 109/111 (98.20%), Query Frame = 2

Query:  116 NNSNYKNDTMIRKEVFLTPAVLRECRRIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFYYLVQDLKCFVFSLISLHFKIKPI 448
            NNSNYKNDTMIRKEVF++P+VLRE RRII ESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQ+SKDPEGLRIFYYLVQDLKCFVFSLI+LHFKIKPI
Sbjct:   48 NNSNYKNDTMIRKEVFVSPSVLREARRIIQESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQTSKDPEGLRIFYYLVQDLKCFVFSLINLHFKIKPI 158

HSP 2 Score: 77.411 bits (189), Expect = 5.977e-72
Identity = 36/41 (87.80%), Postives = 37/41 (90.24%), Query Frame = 1

Query:    1 AGEE---DGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYA 114
            AGE+    GEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYA
Sbjct:    7 AGEDVPGGGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYA 47

[Close]

BLAST of BQ624122 vs. ExPASy Swiss-Prot
Match: MGN_EUPLA (Protein mago nashi homolog OS=Euphorbia lagascae PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.258e-71
Identity = 104/111 (93.69%), Postives = 107/111 (96.40%), Query Frame = 2

Query:  116 NNSNYKNDTMIRKEVFLTPAVLRECRRIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFYYLVQDLKCFVFSLISLHFKIKPI 448
            NNSNYKNDTMIRKEVFLTPAVL+ECRRII+ESEIMKEDD NWP PDRVGRQELEIVMGNE+ISFTTSKIGSLVDVQ SKDPEGLRIFYYLV DLKCFVFSLISLHFKIKPI
Sbjct:   39 NNSNYKNDTMIRKEVFLTPAVLKECRRIIAESEIMKEDDANWPGPDRVGRQELEIVMGNEYISFTTSKIGSLVDVQRSKDPEGLRIFYYLVHDLKCFVFSLISLHFKIKPI 149

HSP 2 Score: 78.5666 bits (192), Expect = 2.258e-71
Identity = 34/35 (97.14%), Postives = 34/35 (97.14%), Query Frame = 1

Query:   10 EDGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYA 114
            ED EFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYA
Sbjct:    4 EDNEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYA 38

[Close]

BLAST of BQ624122 vs. ExPASy Swiss-Prot
Match: MGN_ARATH (Protein mago nashi homolog OS=Arabidopsis thaliana GN=At1g02140 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 7.127e-70
Identity = 100/111 (90.09%), Postives = 107/111 (96.40%), Query Frame = 2

Query:  116 NNSNYKNDTMIRKEVFLTPAVLRECRRIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFYYLVQDLKCFVFSLISLHFKIKPI 448
            NNSNYKNDT+IRKEVFLTPAVL+EC+RI+SESEI+KEDDNNWPEPDRVG+QELEIV+GNEHISF TSKIGSLVD QSS DPEGLRIFYYLVQDLKC VFSLISLHFKIKPI
Sbjct:   40 NNSNYKNDTIIRKEVFLTPAVLKECKRIVSESEILKEDDNNWPEPDRVGKQELEIVLGNEHISFATSKIGSLVDCQSSNDPEGLRIFYYLVQDLKCLVFSLISLHFKIKPI 150

HSP 2 Score: 75.0998 bits (183), Expect = 7.127e-70
Identity = 34/38 (89.47%), Postives = 34/38 (89.47%), Query Frame = 1

Query:    1 AGEEDGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYA 114
            A EE  EFYLRYYVGHKGKFGHEFLEFEFR DGKLRYA
Sbjct:    2 AAEEATEFYLRYYVGHKGKFGHEFLEFEFREDGKLRYA 39

[Close]

BLAST of BQ624122 vs. ExPASy Swiss-Prot
Match: MGN_RAT (Protein mago nashi homolog OS=Rattus norvegicus GN=Magoh PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.552e-60
Identity = 86/111 (77.48%), Postives = 96/111 (86.49%), Query Frame = 2

Query:  116 NNSNYKNDTMIRKEVFLTPAVLRECRRIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFYYLVQDLKCFVFSLISLHFKIKPI 448
            NNSNYKND MIRKE ++  +V+ E +RII +SEI KEDD  WP PDRVGRQELEIV+G+EHISFTTSKIGSL+DV  SKDPEGLR+FYYLVQDLKC VFSLI LHFKIKPI
Sbjct:   36 NNSNYKNDVMIRKEAYVHKSVMEELKRIIDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLRVFYYLVQDLKCLVFSLIGLHFKIKPI 146

HSP 2 Score: 73.9442 bits (180), Expect = 1.552e-60
Identity = 31/34 (91.18%), Postives = 33/34 (97.06%), Query Frame = 1

Query:   13 DGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYA 114
            + +FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYA
Sbjct:    2 ESDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYA 35

[Close]

BLAST of BQ624122 vs. ExPASy Swiss-Prot
Match: MGN_MOUSE (Protein mago nashi homolog OS=Mus musculus GN=Magoh PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.552e-60
Identity = 86/111 (77.48%), Postives = 96/111 (86.49%), Query Frame = 2

Query:  116 NNSNYKNDTMIRKEVFLTPAVLRECRRIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFYYLVQDLKCFVFSLISLHFKIKPI 448
            NNSNYKND MIRKE ++  +V+ E +RII +SEI KEDD  WP PDRVGRQELEIV+G+EHISFTTSKIGSL+DV  SKDPEGLR+FYYLVQDLKC VFSLI LHFKIKPI
Sbjct:   36 NNSNYKNDVMIRKEAYVHKSVMEELKRIIDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLRVFYYLVQDLKCLVFSLIGLHFKIKPI 146

HSP 2 Score: 73.9442 bits (180), Expect = 1.552e-60
Identity = 31/34 (91.18%), Postives = 33/34 (97.06%), Query Frame = 1

Query:   13 DGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYA 114
            + +FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYA
Sbjct:    2 ESDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYA 35

[Close]

BLAST of BQ624122 vs. ExPASy Swiss-Prot
Match: MGN_HUMAN (Protein mago nashi homolog OS=Homo sapiens GN=MAGOH PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.552e-60
Identity = 86/111 (77.48%), Postives = 96/111 (86.49%), Query Frame = 2

Query:  116 NNSNYKNDTMIRKEVFLTPAVLRECRRIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFYYLVQDLKCFVFSLISLHFKIKPI 448
            NNSNYKND MIRKE ++  +V+ E +RII +SEI KEDD  WP PDRVGRQELEIV+G+EHISFTTSKIGSL+DV  SKDPEGLR+FYYLVQDLKC VFSLI LHFKIKPI
Sbjct:   36 NNSNYKNDVMIRKEAYVHKSVMEELKRIIDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLRVFYYLVQDLKCLVFSLIGLHFKIKPI 146

HSP 2 Score: 73.9442 bits (180), Expect = 1.552e-60
Identity = 31/34 (91.18%), Postives = 33/34 (97.06%), Query Frame = 1

Query:   13 DGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYA 114
            + +FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYA
Sbjct:    2 ESDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYA 35

[Close]

BLAST of BQ624122 vs. ExPASy Swiss-Prot
Match: MGN_BOVIN (Protein mago nashi homolog OS=Bos taurus GN=MAGOH PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.552e-60
Identity = 86/111 (77.48%), Postives = 96/111 (86.49%), Query Frame = 2

Query:  116 NNSNYKNDTMIRKEVFLTPAVLRECRRIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFYYLVQDLKCFVFSLISLHFKIKPI 448
            NNSNYKND MIRKE ++  +V+ E +RII +SEI KEDD  WP PDRVGRQELEIV+G+EHISFTTSKIGSL+DV  SKDPEGLR+FYYLVQDLKC VFSLI LHFKIKPI
Sbjct:   36 NNSNYKNDVMIRKEAYVHKSVMEELKRIIDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLRVFYYLVQDLKCLVFSLIGLHFKIKPI 146

HSP 2 Score: 73.9442 bits (180), Expect = 1.552e-60
Identity = 31/34 (91.18%), Postives = 33/34 (97.06%), Query Frame = 1

Query:   13 DGEFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYA 114
            + +FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYA
Sbjct:    2 ESDFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYA 35

[Close]

BLAST of BQ624122 vs. ExPASy Swiss-Prot
Match: MGN_SALSA (Protein mago nashi homolog OS=Salmo salar GN=magoh PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 2.638e-60
Identity = 86/111 (77.48%), Postives = 96/111 (86.49%), Query Frame = 2

Query:  116 NNSNYKNDTMIRKEVFLTPAVLRECRRIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFYYLVQDLKCFVFSLISLHFKIKPI 448
            NNSNYKND MIRKE ++  +V+ E +RII +SEI KEDD  WP PDRVGRQELEIV+G+EHISFTTSKIGSL+DV  SKDPEGLR+FYYLVQDLKC VFSLI LHFKIKPI
Sbjct:   37 NNSNYKNDVMIRKEAYVHKSVMEELKRIIDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLRVFYYLVQDLKCLVFSLIGLHFKIKPI 147

HSP 2 Score: 73.1738 bits (178), Expect = 2.638e-60
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 1

Query:   19 EFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYA 114
            +FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYA
Sbjct:    5 DFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYA 36

[Close]

BLAST of BQ624122 vs. ExPASy Swiss-Prot
Match: MGN_DANRE (Protein mago nashi homolog OS=Danio rerio GN=magoh PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 2.638e-60
Identity = 86/111 (77.48%), Postives = 96/111 (86.49%), Query Frame = 2

Query:  116 NNSNYKNDTMIRKEVFLTPAVLRECRRIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFYYLVQDLKCFVFSLISLHFKIKPI 448
            NNSNYKND MIRKE ++  +V+ E +RII +SEI KEDD  WP PDRVGRQELEIV+G+EHISFTTSKIGSL+DV  SKDPEGLR+FYYLVQDLKC VFSLI LHFKIKPI
Sbjct:   37 NNSNYKNDVMIRKEAYVHKSVMEELKRIIDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLRVFYYLVQDLKCLVFSLIGLHFKIKPI 147

HSP 2 Score: 73.1738 bits (178), Expect = 2.638e-60
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 1

Query:   19 EFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYA 114
            +FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYA
Sbjct:    5 DFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYA 36

[Close]

BLAST of BQ624122 vs. ExPASy Swiss-Prot
Match: MGN_CHICK (Protein mago nashi homolog OS=Gallus gallus GN=MAGOH PE=2 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 2.638e-60
Identity = 86/111 (77.48%), Postives = 96/111 (86.49%), Query Frame = 2

Query:  116 NNSNYKNDTMIRKEVFLTPAVLRECRRIISESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKDPEGLRIFYYLVQDLKCFVFSLISLHFKIKPI 448
            NNSNYKND MIRKE ++  +V+ E +RII +SEI KEDD  WP PDRVGRQELEIV+G+EHISFTTSKIGSL+DV  SKDPEGLR+FYYLVQDLKC VFSLI LHFKIKPI
Sbjct:   36 NNSNYKNDVMIRKEAYVHKSVMEELKRIIDDSEITKEDDALWPPPDRVGRQELEIVIGDEHISFTTSKIGSLIDVNQSKDPEGLRVFYYLVQDLKCLVFSLIGLHFKIKPI 146

HSP 2 Score: 73.1738 bits (178), Expect = 2.638e-60
Identity = 31/32 (96.88%), Postives = 32/32 (100.00%), Query Frame = 1

Query:   19 EFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYA 114
            +FYLRYYVGHKGKFGHEFLEFEFRPDGKLRYA
Sbjct:    4 DFYLRYYVGHKGKFGHEFLEFEFRPDGKLRYA 35

The following BLAST results are available for this feature:

BLAST of BQ624122 vs. ExPASy Swiss-Prot

BLAST of BQ624122 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19


Match Name	E-value	Identity	Description
MGN_ORYSJ	5.977e-72	93.69	Protein mago nashi homolog OS=Oryza sativa subsp. ...	[more]
MGN_EUPLA	2.258e-71	93.69	Protein mago nashi homolog OS=Euphorbia lagascae P...	[more]
MGN_ARATH	7.127e-70	90.09	Protein mago nashi homolog OS=Arabidopsis thaliana...	[more]
MGN_RAT	1.552e-60	77.48	Protein mago nashi homolog OS=Rattus norvegicus GN...	[more]
MGN_MOUSE	1.552e-60	77.48	Protein mago nashi homolog OS=Mus musculus GN=Mago...	[more]
MGN_HUMAN	1.552e-60	77.48	Protein mago nashi homolog OS=Homo sapiens GN=MAGO...	[more]
MGN_BOVIN	1.552e-60	77.48	Protein mago nashi homolog OS=Bos taurus GN=MAGOH ...	[more]
MGN_SALSA	2.638e-60	77.48	Protein mago nashi homolog OS=Salmo salar GN=magoh...	[more]
MGN_DANRE	2.638e-60	77.48	Protein mago nashi homolog OS=Danio rerio GN=magoh...	[more]
MGN_CHICK	2.638e-60	77.48	Protein mago nashi homolog OS=Gallus gallus GN=MAG...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_01213 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01213 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BQ624122 ID=BQ624122; Name=BQ624122; organism=Citrus sinensis; type=EST; length=636bp
GCCGGAGAAGAAGATGGAGAGTTTTATCTTCGTTACTACGTAGGGCACAA
GGGCAAATTCGGTCACGAGTTCTTGGAGTTCGAGTTTCGGCCAGATGGCA
AGCTCCGATACGCGTAATAATTCCAACTACAAAAACGATACTATGATTCG
CAAAGAGGTCTTCCTCACCCCCGCCGTCCTCCGCGAATGCCGCCGCATCA
TTTCCGAGAGCGAGATCATGAAGGAAGATGATAACAACTGGCCGGAGCCT
GACCGTGTTGGACGGCAGGAGCTGGAGATTGTAATGGGAAATGAACATAT
CTCCTTCACTACTTCAAAAATTGGATCACTTGTTGACGTCCAGAGTAGTA
AGGATCCGGAAGGCCTTCGTATATTCTATTATCTTGTTCAGGACTTGAAG
TGCTTTGTGTTCTCTCTCATCTCACTTCATTTCAAGATCAAACCTATATA
AACAGCAACATGGTTTCTGCCTTACAATATCTGTTCGGGGGTCTTGCTTT
TGTGTTTGTAACAGCTGCTTCATTAGTATGTGGACTTTGTAGTTTTACAA
CTTTTTGCCTTTGTTATTATCTGGGTTTGGGTGTGGCTTATGTAAGGATC
TGTGGATTTTGGAGCTGAGTAAAATGTCCTGACTGC