BQ624129

Overview
NameBQ624129
Unique NameBQ624129
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length624
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ624129 vs. ExPASy Swiss-Prot
Match: PRP6_HUMAN (Pre-mRNA-processing factor 6 OS=Homo sapiens GN=PRPF6 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.035e-27
Identity = 49/88 (55.68%), Postives = 63/88 (71.59%), Query Frame = 2
Query:   59 AVAKLFWHDRKVDKARTWLNRAVTLAPDIGDFWALYYKFELQHGSEDNQKDVLKRCVAAEPKHGEKWQAVSKAVENSHQPTEAILKKV 322
            AVAKLFW  RK+ KAR W +R V +  D+GD WA +YKFELQHG+E+ Q++V KRC +AEP+HGE W AVSK + N  +    IL+ V
Sbjct:  846 AVAKLFWSQRKITKAREWFHRTVKIDSDLGDAWAFFYKFELQHGTEEQQEEVRKRCESAEPRHGELWCAVSKDIANWQKKIGDILRLV 933          

HSP 2 Score: 33.4982 bits (75), Expect = 6.035e-27
Identity = 12/18 (66.67%), Postives = 15/18 (83.33%), Query Frame = 1
Query:    1 RSKSADAYKNCDHDPHVI 54
            R+KS DA K C+HDPHV+
Sbjct:  827 RTKSVDALKKCEHDPHVL 844          
BLAST of BQ624129 vs. ExPASy Swiss-Prot
Match: PRP6_MOUSE (Pre-mRNA-processing factor 6 OS=Mus musculus GN=Prpf6 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 3.820e-26
Identity = 48/85 (56.47%), Postives = 61/85 (71.76%), Query Frame = 2
Query:   59 AVAKLFWHDRKVDKARTWLNRAVTLAPDIGDFWALYYKFELQHGSEDNQKDVLKRCVAAEPKHGEKWQAVSKAVENSHQPTEAIL 313
            AVAKLFW +RK+ KAR W +R V +  D+GD WA +YKFELQHG+E+ Q++V KRC  AEP+HGE W AVSK + N  +    IL
Sbjct:  846 AVAKLFWSERKITKAREWFHRTVKIDSDLGDAWAFFYKFELQHGTEEQQEEVRKRCENAEPRHGELWCAVSKDITNWQRKIGEIL 930          

HSP 2 Score: 32.3426 bits (72), Expect = 3.820e-26
Identity = 11/18 (61.11%), Postives = 15/18 (83.33%), Query Frame = 1
Query:    1 RSKSADAYKNCDHDPHVI 54
            ++KS DA K C+HDPHV+
Sbjct:  827 KTKSVDALKKCEHDPHVL 844          
BLAST of BQ624129 vs. ExPASy Swiss-Prot
Match: PRP1_SCHPO (Pre-mRNA-splicing factor prp1 OS=Schizosaccharomyces pombe GN=prp1 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.494e-15
Identity = 34/91 (37.36%), Postives = 56/91 (61.54%), Query Frame = 2
Query:   62 VAKLFWHDRKVDKARTWLNRAVTLAPDIGDFWALYYKFELQHGSEDNQKDVLKRCVAAEPKHGEKWQAVSKAVENSHQPTEAILKKVVLAL 334
            +A++ W ++K DKAR+W  +AV    D GD W  +YK+ L+ G+ED QK+VL     A+P HG  W +++K ++NS +  + +L   +  L
Sbjct:  816 IARMLWLEKKADKARSWFLKAVKADQDNGDVWCWFYKYSLEAGNEDQQKEVLTSFETADPHHGYFWPSITKDIKNSRKTPQELLHLAINVL 906          
The following BLAST results are available for this feature:
BLAST of BQ624129 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PRP6_HUMAN6.035e-2755.68Pre-mRNA-processing factor 6 OS=Homo sapiens GN=PR... [more]
PRP6_MOUSE3.820e-2656.47Pre-mRNA-processing factor 6 OS=Mus musculus GN=Pr... [more]
PRP1_SCHPO4.494e-1537.36Pre-mRNA-splicing factor prp1 OS=Schizosaccharomyc... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_01220 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01220 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ624129 ID=BQ624129; Name=BQ624129; organism=Citrus sinensis; type=EST; length=624bp
AGAAGCAAGAGTGCAGATGCTTACAAGAATTGTGATCATGATCCGCATGT
AATAGCCTGCTGTGGCTAAGTTGTTCTGGCATGACAGGAAGGTTGATAAG
GCAAGGACTTGGCTCAACCGGGCAGTGACCCTTGCTCCAGATATTGGGGA
TTTCTGGGCATTGTACTACAAGTTCGAGCTGCAGCATGGTAGTGAGGACA
ACCAGAAGGATGTGCTGAAGAGGTGTGTTGCTGCTGAGCCAAAGCACGGT
GAGAAATGGCAAGCTGTTTCTAAGGCTGTGGAGAACTCTCACCAGCCAAC
TGAAGCGATCTTAAAGAAAGTTGTCTTGGCACTTGGGAAGGAAGAGACTG
CTGCTGAAAGCAATGGACACTAGTTGCTTGTGAGCTTTTTGTTAGATTGT
TTTTCTTTCTCTTTTGAAGTGCTTACTTTCAACTAATATAGCTGGGTGAA
TAATATTTTAGCTATTTATAAATTTGTTTCTGCTATAGTTTGAAGTTGGA
TACCTTAAATACATGGTCTGCAGTGATGAAATTATGGTTATTTATTTTGT
ATCTATGGATAGGGGTAGGGATCAATCCACCAATTTTTTTTTTTTAAAAA
ACACGTCCCCCCCACCCCAAATAA
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