BQ624218

Overview
NameBQ624218
Unique NameBQ624218
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length699
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of BQ624218 vs. ExPASy Swiss-Prot
Match: UP12_ORYSJ (Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic OS=Oryza sativa subsp. japonica GN=Os08g0242700 PE=2 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 8.588e-40
Identity = 77/136 (56.62%), Postives = 105/136 (77.21%), Query Frame = 3 
Query:  288 SDQDADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGP 695
            S  + D +P P V+IDQDS+ DATIV+++ GDRLG L+DTMNALK+LGL+V K +V  + + K  K  IT+L TGRK+ +P+LLE +RLTIINN+++YHPE+S QLA+G  FG + P + +DVDIATHI + +DGP
Sbjct:   67 SSSNTDTVPTPKVIIDQDSDPDATIVEITLGDRLGDLLDTMNALKNLGLNVVKASVCLDSTGKHIKLAITKLSTGRKIGEPELLEAVRLTIINNMIQYHPEASSQLALGATFGPEPPTELVDVDIATHIDIYDDGP 202
[Close]
BLAST of BQ624218 vs. ExPASy Swiss-Prot
Match: UP12_ORYSI (Unknown protein DS12 from 2D-PAGE of leaf, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_027381 PE=1 SV=2)

HSP 1 Score: 163.696 bits (413), Expect = 8.588e-40
Identity = 77/136 (56.62%), Postives = 105/136 (77.21%), Query Frame = 3 
Query:  288 SDQDADYIPMPHVLIDQDSNSDATIVQLSFGDRLGALIDTMNALKDLGLDVAKGTVNTEGSVKQTKFFITRLDTGRKVEDPDLLERIRLTIINNLLKYHPESSEQLAMGEAFGIKAPEKKLDVDIATHIHVKEDGP 695
            S  + D +P P V+IDQDS+ DATIV+++ GDRLG L+DTMNALK+LGL+V K +V  + + K  K  IT+L TGRK+ +P+LLE +RLTIINN+++YHPE+S QLA+G  FG + P + +DVDIATHI + +DGP
Sbjct:   67 SSSNTDTVPTPKVIIDQDSDPDATIVEITLGDRLGDLLDTMNALKNLGLNVVKASVCLDSTGKHIKLAITKLSTGRKIGEPELLEAVRLTIINNMIQYHPEASSQLALGATFGPEPPTELVDVDIATHIDIYDDGP 202
The following BLAST results are available for this feature:
BLAST of BQ624218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
UP12_ORYSJ8.588e-4056.62Unknown protein DS12 from 2D-PAGE of leaf, chlorop... [more]
UP12_ORYSI8.588e-4056.62Unknown protein DS12 from 2D-PAGE of leaf, chlorop... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_01309 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01309 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ624218 ID=BQ624218; Name=BQ624218; organism=Citrus sinensis; type=EST; length=699bp
TGCCACTGCTCTCTCCAGCTACGAGAAAGGCCCGAAAGCTCTTCTTCAAT
TCGATGGCTTTTACAGCTACTCCTTTATTCTCTTCTACGGCGTCGTCTTC
TTCGACTGCTCTCCATCGATCTAAATTCCTTGATTCCGATTTTGCCGCTC
CGTTTTCTCATGATTCATTTCATCTCATTAACTTCTCCCGCAGATTTTCC
GAACAAGGAATTTGTCTTTCGAGAAAAAAGAATATTTTGTTTGCCTCTGT
CAACGGTACGAATGCTGTGAGTCCAACCCCCTTGAAATCGGACCAAGATG
CTGATTACATTCCGATGCCACATGTTCTGATAGACCAGGATTCGAATTCT
GATGCAACAATTGTGCAACTCAGTTTTGGAGATCGTCTTGGAGCTCTCAT
TGACACGATGAATGCCCTGAAAGACTTGGGATTGGACGTGGCTAAGGGAA
CTGTTAATACTGAAGGTTCAGTCAAACAGACAAAATTTTTCATAACACGG
TTAGACACCGGGCGCAAAGTTGAAGATCCTGACTTGCTAGAGAGAATTCG
ACTTACCATCATTAACAATCTTTTGAAGTATCATCCAGAATCTAGCGAGC
AACTTGCCATGGGCGAGGCTTTCGGGATAAAAGCTCCAGAGAAAAAGCTT
GATGTTGATATTGCCACCCATATACATGTCAAGGAAGATGGGCCTAAGA
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