BQ624222

Overview
NameBQ624222
Unique NameBQ624222
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length657
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ624222 vs. ExPASy Swiss-Prot
Match: TPIC_FRAAN (Triosephosphate isomerase, chloroplastic OS=Fragaria ananassa GN=TPI PE=2 SV=1)

HSP 1 Score: 272.707 bits (696), Expect = 1.174e-72
Identity = 129/151 (85.43%), Postives = 147/151 (97.35%), Query Frame = 2
Query:    2 DDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVAA 454
            DDQFIGKKAAYAL+EGLGVIACIGE+L+EREAGKTFDVC++QLKA+ADA+PSW+N+V+AYEPVWAIGTGKVA+P+QAQEVH A+R+WLK NVSA+VA+KTRIIYGGSVNG N AELAK+EDIDGFLVGGASLKGPEFATIVN+VTSKKVAA
Sbjct:  164 DDQFIGKKAAYALNEGLGVIACIGEKLEEREAGKTFDVCYEQLKAFADAVPSWENIVVAYEPVWAIGTGKVASPQQAQEVHVAVREWLKKNVSAEVASKTRIIYGGSVNGGNSAELAKEEDIDGFLVGGASLKGPEFATIVNAVTSKKVAA 314          
BLAST of BQ624222 vs. ExPASy Swiss-Prot
Match: TPIC_SPIOL (Triosephosphate isomerase, chloroplastic OS=Spinacia oleracea GN=TPIP1 PE=1 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 3.416e-72
Identity = 129/150 (86.00%), Postives = 145/150 (96.67%), Query Frame = 2
Query:    5 DQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVAA 454
            ++FIGKKAAYAL++G+GVIACIGE L+EREAGKTFDVC+QQLKA+ADA+PSWDNVV+AYEPVWAIGTGKVA+P+QAQEVH A+RDWLK NVS +VA+KTRIIYGGSVNG NCAELAKQEDIDGFLVGGASLKGPEFATIVNSVT+KKVAA
Sbjct:  173 NEFIGKKAAYALNQGVGVIACIGELLEEREAGKTFDVCYQQLKAFADALPSWDNVVVAYEPVWAIGTGKVASPDQAQEVHVAVRDWLKKNVSEEVASKTRIIYGGSVNGGNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTAKKVAA 322          
BLAST of BQ624222 vs. ExPASy Swiss-Prot
Match: TPIC_ARATH (Triosephosphate isomerase, chloroplastic OS=Arabidopsis thaliana GN=TIM PE=1 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 7.611e-72
Identity = 130/150 (86.67%), Postives = 143/150 (95.33%), Query Frame = 2
Query:    5 DQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVAA 454
            D+FIGKKAAYALSEGLGVIACIGE+L+EREAGKTFDVCF QLKA+ADA+PSWDN+V+AYEPVWAIGTGKVA+P+QAQEVH A+R WLK NVS +VA+KTRIIYGGSVNG N AELAK+EDIDGFLVGGASLKGPEFATIVNSVTSKKVAA
Sbjct:  166 DEFIGKKAAYALSEGLGVIACIGEKLEEREAGKTFDVCFAQLKAFADAVPSWDNIVVAYEPVWAIGTGKVASPQQAQEVHVAVRGWLKKNVSEEVASKTRIIYGGSVNGGNSAELAKEEDIDGFLVGGASLKGPEFATIVNSVTSKKVAA 315          
BLAST of BQ624222 vs. ExPASy Swiss-Prot
Match: TPIC_SECCE (Triosephosphate isomerase, chloroplastic OS=Secale cereale PE=1 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 8.708e-68
Identity = 125/151 (82.78%), Postives = 138/151 (91.39%), Query Frame = 2
Query:    2 DDQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVAA 454
            DD+FIGKKAAYALS+ L V+ACIGE L+EREAGKTFDVCF+Q+KA+AD I  W NVVIAYEPVWAIGTGKVA+PEQAQEVHAA+RDWLK NVSADVA+  RIIYGGSVN +NCAELAK+EDIDGFLVGGASLKGP+FATI NSVTSKKV A
Sbjct:  148 DDEFIGKKAAYALSQNLKVMACIGELLEEREAGKTFDVCFKQMKAFADNITDWTNVVIAYEPVWAIGTGKVASPEQAQEVHAAVRDWLKTNVSADVASTVRIIYGGSVNAANCAELAKKEDIDGFLVGGASLKGPDFATICNSVTSKKVTA 298          
BLAST of BQ624222 vs. ExPASy Swiss-Prot
Match: TPIS_STELP (Triosephosphate isomerase, cytosolic OS=Stellaria longipes GN=TPI PE=2 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 3.424e-64
Identity = 120/151 (79.47%), Postives = 135/151 (89.40%), Query Frame = 2
Query:    5 DQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYAD-AIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVAA 454
            ++F+GKKAAYA SEGLGVIACIGE L+EREAGKTFDVCF+QLK++A      WDNVV+AYEPVWAIGTGKVA+PEQAQEVH A+RDWLK NVS +VA+KTRIIYGGSVNG N   LA QED+DGFLVGGASLKGPEFATI+NSVT+KKVAA
Sbjct:  107 NEFVGKKAAYAQSEGLGVIACIGELLEEREAGKTFDVCFKQLKSFARFPAKPWDNVVVAYEPVWAIGTGKVASPEQAQEVHVAVRDWLKTNVSEEVASKTRIIYGGSVNGGNSLALAAQEDVDGFLVGGASLKGPEFATIINSVTAKKVAA 257          
BLAST of BQ624222 vs. ExPASy Swiss-Prot
Match: TPIS_MAIZE (Triosephosphate isomerase, cytosolic OS=Zea mays PE=3 SV=3)

HSP 1 Score: 204.142 bits (518), Expect = 5.129e-52
Identity = 100/146 (68.49%), Postives = 115/146 (78.77%), Query Frame = 2
Query:    5 DQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSK 442
            ++F+G K AYALS+GL VIAC+GE L++REAG T DV   Q KA A+ I  W NVV+AYEPVWAIGTGKVATP QAQEVHA+LRDWLK N S +VA  TRIIYGGSV  +NC ELA Q D+DGFLVGGASLK PEF  I+N+ T K
Sbjct:  107 NEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAEKIKDWSNVVVAYEPVWAIGTGKVATPAQAQEVHASLRDWLKTNASPEVAESTRIIYGGSVTAANCKELAAQPDVDGFLVGGASLK-PEFIDIINAATVK 251          
BLAST of BQ624222 vs. ExPASy Swiss-Prot
Match: TPIS_SECCE (Triosephosphate isomerase, cytosolic OS=Secale cereale PE=2 SV=3)

HSP 1 Score: 203.371 bits (516), Expect = 8.748e-52
Identity = 99/145 (68.28%), Postives = 117/145 (80.69%), Query Frame = 2
Query:    8 QFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSK 442
            +F+G+K AYAL++GL VIAC+GE L++REAG T +V  +Q KA AD I  W NVV+AYEPVWAIGTGKVA+P QAQEVHA LRDWLK NVS +VA  TRIIYGGSV G++C ELA Q D+DGFLVGGASLK PEF  I+N+ T K
Sbjct:  108 EFVGEKVAYALAQGLKVIACVGETLEQREAGSTMEVVAEQTKAIADKIKDWTNVVVAYEPVWAIGTGKVASPAQAQEVHANLRDWLKTNVSPEVAESTRIIYGGSVTGASCKELAAQPDVDGFLVGGASLK-PEFIDIINAATVK 251          
BLAST of BQ624222 vs. ExPASy Swiss-Prot
Match: TPIS_ARATH (Triosephosphate isomerase, cytosolic OS=Arabidopsis thaliana GN=CTIMC PE=1 SV=2)

HSP 1 Score: 201.445 bits (511), Expect = 3.324e-51
Identity = 101/148 (68.24%), Postives = 113/148 (76.35%), Query Frame = 2
Query:    8 QFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 451
            +F+G K AYAL++GL VIAC+GE L+EREAG T DV   Q KA AD + +W NVVIAYEPVWAIGTGKVA+P QAQEVH  LR WL  NVSADVA  TRIIYGGSVNG NC EL  Q D+DGFLVGGASLK PEF  I+ +   KK A
Sbjct:  108 EFVGDKVAYALAQGLKVIACVGETLEEREAGSTMDVVAAQTKAIADRVTNWSNVVIAYEPVWAIGTGKVASPAQAQEVHDELRKWLAKNVSADVAATTRIIYGGSVNGGNCKELGGQADVDGFLVGGASLK-PEFIDIIKAAEVKKSA 254          
BLAST of BQ624222 vs. ExPASy Swiss-Prot
Match: TPIS_LACSA (Triosephosphate isomerase, cytosolic (Fragment) OS=Lactuca sativa PE=2 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 4.342e-51
Identity = 100/149 (67.11%), Postives = 117/149 (78.52%), Query Frame = 2
Query:    5 DQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSKKVA 451
            ++F+G K AYALS+GL VIAC+GE L++REAG T +V   Q KA AD I SWDNVV+AYEPVWAIGTGKVA+P QAQEVHA LR W  +NVSA+V+  TRIIYGGSV+GSNC EL  Q D+DGFLVGGASLK PEF  I+ +   KK A
Sbjct:   48 NEFVGDKVAYALSQGLKVIACVGETLEQREAGTTMEVVAAQTKAIADKISSWDNVVLAYEPVWAIGTGKVASPAQAQEVHAGLRKWFCDNVSAEVSASTRIIYGGSVSGSNCKELGGQTDVDGFLVGGASLK-PEFIDIIKAAEVKKSA 195          
BLAST of BQ624222 vs. ExPASy Swiss-Prot
Match: TPIS_ORYSJ (Triosephosphate isomerase, cytosolic OS=Oryza sativa subsp. japonica GN=TPI PE=1 SV=3)

HSP 1 Score: 199.519 bits (506), Expect = 1.263e-50
Identity = 98/146 (67.12%), Postives = 115/146 (78.77%), Query Frame = 2
Query:    5 DQFIGKKAAYALSEGLGVIACIGEQLQEREAGKTFDVCFQQLKAYADAIPSWDNVVIAYEPVWAIGTGKVATPEQAQEVHAALRDWLKNNVSADVATKTRIIYGGSVNGSNCAELAKQEDIDGFLVGGASLKGPEFATIVNSVTSK 442
            ++F+G K AYALS+GL VIAC+GE L++RE+G T DV   Q KA ++ I  W NVV+AYEPVWAIGTGKVATP+QAQEVH  LR WL  NVSA+VA  TRIIYGGSV G+NC ELA + D+DGFLVGGASLK PEF  I+NS T K
Sbjct:  107 NEFVGDKVAYALSQGLKVIACVGETLEQRESGSTMDVVAAQTKAISERIKDWTNVVVAYEPVWAIGTGKVATPDQAQEVHDGLRKWLAANVSAEVAESTRIIYGGSVTGANCKELAAKPDVDGFLVGGASLK-PEFIDIINSATVK 251          
The following BLAST results are available for this feature:
BLAST of BQ624222 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIC_FRAAN1.174e-7285.43Triosephosphate isomerase, chloroplastic OS=Fragar... [more]
TPIC_SPIOL3.416e-7286.00Triosephosphate isomerase, chloroplastic OS=Spinac... [more]
TPIC_ARATH7.611e-7286.67Triosephosphate isomerase, chloroplastic OS=Arabid... [more]
TPIC_SECCE8.708e-6882.78Triosephosphate isomerase, chloroplastic OS=Secale... [more]
TPIS_STELP3.424e-6479.47Triosephosphate isomerase, cytosolic OS=Stellaria ... [more]
TPIS_MAIZE5.129e-5268.49Triosephosphate isomerase, cytosolic OS=Zea mays P... [more]
TPIS_SECCE8.748e-5268.28Triosephosphate isomerase, cytosolic OS=Secale cer... [more]
TPIS_ARATH3.324e-5168.24Triosephosphate isomerase, cytosolic OS=Arabidopsi... [more]
TPIS_LACSA4.342e-5167.11Triosephosphate isomerase, cytosolic (Fragment) OS... [more]
TPIS_ORYSJ1.263e-5067.12Triosephosphate isomerase, cytosolic OS=Oryza sati... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_01313 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01313 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ624222 ID=BQ624222; Name=BQ624222; organism=Citrus sinensis; type=EST; length=657bp
AGATGATCAGTTTATAGGGAAGAAAGCTGCCTATGCCTTGAGCGAGGGAC
TTGGTGTAATAGCTTGTATCGGGGAACAGTTGCAAGAGAGAGAAGCAGGA
AAAACTTTTGATGTCTGTTTTCAGCAACTTAAAGCCTATGCAGATGCTAT
ACCCAGTTGGGATAATGTAGTCATTGCATATGAGCCTGTATGGGCTATTG
GAACTGGTAAAGTGGCCACCCCCGAGCAGGCTCAGGAAGTACATGCTGCT
CTTCGTGATTGGCTTAAAAACAATGTCTCAGCAGACGTTGCCACTAAAAC
ACGTATTATCTATGGAGGGTCAGTAAATGGAAGCAATTGTGCTGAACTTG
CAAAACAAGAGGATATTGATGGTTTTCTGGTTGGTGGCGCTTCCTTGAAG
GGCCCAGAGTTTGCTACCATTGTCAATTCCGTAACATCCAAGAAAGTAGC
TGCTTGATGTATAAACCTGTTCTGTCAAGATCAACCAATAATAATGGGCT
AAGAGAATCTATATCAGTTTAAAGCTAATTAGTGTAACCAGCCTATGCCC
TTGCTATGTTCAATGAAAGTTTTGATAGTTTATTTATTTGTTTCTCCTTC
CCCAAACAATCGGAGATTCCTTCTGTTTCTCTATCGGGGGCTGAACTTGT
TTGATAC
back to top