BQ624224 | Citrus Genome Database

Overview


Name	BQ624224
Unique Name	BQ624224
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	675

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

BLAST of BQ624224 vs. ExPASy Swiss-Prot
Match: NH2L1_XENTR (NHP2-like protein 1 OS=Xenopus tropicalis GN=nhp2l1 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.934e-39
Identity = 50/65 (76.92%), Postives = 55/65 (84.62%), Query Frame = 2

Query:  116 VNSKAYPLADSHLTITLMDLVQQAANYKLLKKGANEATKTLNKGTSEFIVMAADTEPLEIFFIFP 310
            VN KAYPLAD+ LT TL+DLVQQAANYK L+KGANEATKTLN+G +EFIVMAAD EPLEI    P
Sbjct:    6 VNPKAYPLADAQLTKTLLDLVQQAANYKQLRKGANEATKTLNRGIAEFIVMAADAEPLEIILHLP 70

HSP 2 Score: 82.4185 bits (202), Expect = 3.934e-39
Identity = 39/53 (73.58%), Postives = 46/53 (86.79%), Query Frame = 3

Query:  384 KNVPYVFVPSKQALGRACGVTRPVVACSVTSNEASQLKTQIQQLKDAIEKLLI 542
            KNVPYVFV SKQALGRACGV+RPV+AC+VT  E SQLK QIQ L+ +IE+LL+
Sbjct:   76 KNVPYVFVRSKQALGRACGVSRPVIACAVTIKEGSQLKPQIQSLQQSIERLLV 128

BLAST of BQ624224 vs. ExPASy Swiss-Prot
Match: NH2L1_XENLA (NHP2-like protein 1 OS=Xenopus laevis GN=nhp2l1 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.934e-39
Identity = 49/65 (75.38%), Postives = 55/65 (84.62%), Query Frame = 2

Query:  116 VNSKAYPLADSHLTITLMDLVQQAANYKLLKKGANEATKTLNKGTSEFIVMAADTEPLEIFFIFP 310
            VN KAYPLAD+ LT TL+DLVQQ+ANYK L+KGANEATKTLN+G +EFIVMAAD EPLEI    P
Sbjct:    6 VNPKAYPLADAQLTKTLLDLVQQSANYKQLRKGANEATKTLNRGIAEFIVMAADAEPLEIILHLP 70

HSP 2 Score: 83.5741 bits (205), Expect = 3.934e-39
Identity = 40/53 (75.47%), Postives = 46/53 (86.79%), Query Frame = 3

Query:  384 KNVPYVFVPSKQALGRACGVTRPVVACSVTSNEASQLKTQIQQLKDAIEKLLI 542
            KNVPYVFV SKQALGRACGV+RPV+ACSVT  E SQLK QIQ ++ AIE+LL+
Sbjct:   76 KNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKPQIQSVQQAIERLLV 128

BLAST of BQ624224 vs. ExPASy Swiss-Prot
Match: NH2L1_RAT (NHP2-like protein 1 OS=Rattus norvegicus GN=Nhp2l1 PE=2 SV=4)

HSP 1 Score: 99.3673 bits (246), Expect = 5.126e-39
Identity = 49/65 (75.38%), Postives = 54/65 (83.08%), Query Frame = 2

Query:  116 VNSKAYPLADSHLTITLMDLVQQAANYKLLKKGANEATKTLNKGTSEFIVMAADTEPLEIFFIFP 310
            VN KAYPLAD+HLT  L+DLVQQ+ NYK L+KGANEATKTLN+G SEFIVMAAD EPLEI    P
Sbjct:    6 VNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLP 70

HSP 2 Score: 82.8037 bits (203), Expect = 5.126e-39
Identity = 39/53 (73.58%), Postives = 46/53 (86.79%), Query Frame = 3

Query:  384 KNVPYVFVPSKQALGRACGVTRPVVACSVTSNEASQLKTQIQQLKDAIEKLLI 542
            KNVPYVFV SKQALGRACGV+RPV+ACSVT  E SQLK QIQ ++ +IE+LL+
Sbjct:   76 KNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERLLV 128

BLAST of BQ624224 vs. ExPASy Swiss-Prot
Match: NH2L1_MOUSE (NHP2-like protein 1 OS=Mus musculus GN=Nhp2l1 PE=2 SV=4)

HSP 1 Score: 99.3673 bits (246), Expect = 5.126e-39
Identity = 49/65 (75.38%), Postives = 54/65 (83.08%), Query Frame = 2

Query:  116 VNSKAYPLADSHLTITLMDLVQQAANYKLLKKGANEATKTLNKGTSEFIVMAADTEPLEIFFIFP 310
            VN KAYPLAD+HLT  L+DLVQQ+ NYK L+KGANEATKTLN+G SEFIVMAAD EPLEI    P
Sbjct:    6 VNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLP 70

HSP 2 Score: 82.8037 bits (203), Expect = 5.126e-39
Identity = 39/53 (73.58%), Postives = 46/53 (86.79%), Query Frame = 3

Query:  384 KNVPYVFVPSKQALGRACGVTRPVVACSVTSNEASQLKTQIQQLKDAIEKLLI 542
            KNVPYVFV SKQALGRACGV+RPV+ACSVT  E SQLK QIQ ++ +IE+LL+
Sbjct:   76 KNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERLLV 128

BLAST of BQ624224 vs. ExPASy Swiss-Prot
Match: NH2L1_MACFA (NHP2-like protein 1 OS=Macaca fascicularis GN=NHP2L1 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 5.126e-39
Identity = 49/65 (75.38%), Postives = 54/65 (83.08%), Query Frame = 2

Query:  116 VNSKAYPLADSHLTITLMDLVQQAANYKLLKKGANEATKTLNKGTSEFIVMAADTEPLEIFFIFP 310
            VN KAYPLAD+HLT  L+DLVQQ+ NYK L+KGANEATKTLN+G SEFIVMAAD EPLEI    P
Sbjct:    6 VNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLP 70

HSP 2 Score: 82.8037 bits (203), Expect = 5.126e-39
Identity = 39/53 (73.58%), Postives = 46/53 (86.79%), Query Frame = 3

Query:  384 KNVPYVFVPSKQALGRACGVTRPVVACSVTSNEASQLKTQIQQLKDAIEKLLI 542
            KNVPYVFV SKQALGRACGV+RPV+ACSVT  E SQLK QIQ ++ +IE+LL+
Sbjct:   76 KNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERLLV 128

BLAST of BQ624224 vs. ExPASy Swiss-Prot
Match: NH2L1_HUMAN (NHP2-like protein 1 OS=Homo sapiens GN=NHP2L1 PE=1 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 5.126e-39
Identity = 49/65 (75.38%), Postives = 54/65 (83.08%), Query Frame = 2

Query:  116 VNSKAYPLADSHLTITLMDLVQQAANYKLLKKGANEATKTLNKGTSEFIVMAADTEPLEIFFIFP 310
            VN KAYPLAD+HLT  L+DLVQQ+ NYK L+KGANEATKTLN+G SEFIVMAAD EPLEI    P
Sbjct:    6 VNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLP 70

HSP 2 Score: 82.8037 bits (203), Expect = 5.126e-39
Identity = 39/53 (73.58%), Postives = 46/53 (86.79%), Query Frame = 3

Query:  384 KNVPYVFVPSKQALGRACGVTRPVVACSVTSNEASQLKTQIQQLKDAIEKLLI 542
            KNVPYVFV SKQALGRACGV+RPV+ACSVT  E SQLK QIQ ++ +IE+LL+
Sbjct:   76 KNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERLLV 128

BLAST of BQ624224 vs. ExPASy Swiss-Prot
Match: NH2L1_BOVIN (NHP2-like protein 1 OS=Bos taurus GN=NHP2L1 PE=2 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 5.126e-39
Identity = 49/65 (75.38%), Postives = 54/65 (83.08%), Query Frame = 2

Query:  116 VNSKAYPLADSHLTITLMDLVQQAANYKLLKKGANEATKTLNKGTSEFIVMAADTEPLEIFFIFP 310
            VN KAYPLAD+HLT  L+DLVQQ+ NYK L+KGANEATKTLN+G SEFIVMAAD EPLEI    P
Sbjct:    6 VNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLP 70

HSP 2 Score: 82.8037 bits (203), Expect = 5.126e-39
Identity = 39/53 (73.58%), Postives = 46/53 (86.79%), Query Frame = 3

Query:  384 KNVPYVFVPSKQALGRACGVTRPVVACSVTSNEASQLKTQIQQLKDAIEKLLI 542
            KNVPYVFV SKQALGRACGV+RPV+ACSVT  E SQLK QIQ ++ +IE+LL+
Sbjct:   76 KNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERLLV 128

BLAST of BQ624224 vs. ExPASy Swiss-Prot
Match: NH2L1_CAEEL (NHP2-like protein 1 homolog OS=Caenorhabditis elegans GN=M28.5 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.508e-38
Identity = 48/67 (71.64%), Postives = 54/67 (80.60%), Query Frame = 2

Query:  110 ESVNSKAYPLADSHLTITLMDLVQQAANYKLLKKGANEATKTLNKGTSEFIVMAADTEPLEIFFIFP 310
            + VN KA+PLAD++L+  LMDLVQQA NYK LKKGANEATKTLN+G SE IVMAAD EPLEI    P
Sbjct:    4 DGVNPKAFPLADTNLSQKLMDLVQQAMNYKQLKKGANEATKTLNRGISEIIVMAADAEPLEILLHLP 70

HSP 2 Score: 84.7297 bits (208), Expect = 2.508e-38
Identity = 40/53 (75.47%), Postives = 47/53 (88.68%), Query Frame = 3

Query:  384 KNVPYVFVPSKQALGRACGVTRPVVACSVTSNEASQLKTQIQQLKDAIEKLLI 542
            KNVPYVFV SK ALGRACGVTRPV+A S+T NE SQLK+QIQ++K+ +EKLLI
Sbjct:   76 KNVPYVFVRSKAALGRACGVTRPVIAASITQNEGSQLKSQIQKIKEDVEKLLI 128

BLAST of BQ624224 vs. ExPASy Swiss-Prot
Match: SNU13_SCHPO (13 kDa ribonucleoprotein-associated protein OS=Schizosaccharomyces pombe GN=snu13 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.240e-38
Identity = 48/66 (72.73%), Postives = 56/66 (84.85%), Query Frame = 2

Query:  113 SVNSKAYPLADSHLTITLMDLVQQAANYKLLKKGANEATKTLNKGTSEFIVMAADTEPLEIFFIFP 310
            SVN KA+PLADS LT  ++DLVQQA++YK L+KGANEATKTLN+G SEFIVMAADTEP+EI    P
Sbjct:    2 SVNPKAFPLADSGLTQQILDLVQQASHYKQLRKGANEATKTLNRGISEFIVMAADTEPIEILLHLP 67

HSP 2 Score: 81.6481 bits (200), Expect = 7.240e-38
Identity = 40/53 (75.47%), Postives = 46/53 (86.79%), Query Frame = 3

Query:  384 KNVPYVFVPSKQALGRACGVTRPVVACSVTSNEASQLKTQIQQLKDAIEKLLI 542
            KNVPYVFVPSK ALGRACGV+RPV++ S+T+NEAS L  QIQ +K AIEKLLI
Sbjct:   73 KNVPYVFVPSKAALGRACGVSRPVISASITTNEASDLLPQIQAIKLAIEKLLI 125

BLAST of BQ624224 vs. ExPASy Swiss-Prot
Match: SNU13_YARLI (13 kDa ribonucleoprotein-associated protein OS=Yarrowia lipolytica GN=SNU13 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.481e-36
Identity = 41/64 (64.06%), Postives = 51/64 (79.69%), Query Frame = 2

Query:  119 NSKAYPLADSHLTITLMDLVQQAANYKLLKKGANEATKTLNKGTSEFIVMAADTEPLEIFFIFP 310
            N KA+PLAD+ LT  ++D+VQQA + + LKKGANEATKTLN+G SEFI+MAAD EP+EI    P
Sbjct:    5 NPKAFPLADAALTQQILDIVQQATHLRQLKKGANEATKTLNRGISEFIIMAADAEPIEILLHLP 68

HSP 2 Score: 85.8853 bits (211), Expect = 6.481e-36
Identity = 41/53 (77.36%), Postives = 48/53 (90.57%), Query Frame = 3

Query:  384 KNVPYVFVPSKQALGRACGVTRPVVACSVTSNEASQLKTQIQQLKDAIEKLLI 542
            KNVPY+FVPSK ALGRACGV+RPV++ SVTSN+ASQLK QI Q+KD IE+LLI
Sbjct:   74 KNVPYIFVPSKVALGRACGVSRPVISASVTSNDASQLKDQIIQMKDKIERLLI 126

The following BLAST results are available for this feature:

BLAST of BQ624224 vs. ExPASy Swiss-Prot

BLAST of BQ624224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20


Match Name	E-value	Identity	Description
NH2L1_XENTR	3.934e-39	76.92	NHP2-like protein 1 OS=Xenopus tropicalis GN=nhp2l...	[more]
NH2L1_XENLA	3.934e-39	75.38	NHP2-like protein 1 OS=Xenopus laevis GN=nhp2l1 PE...	[more]
NH2L1_RAT	5.126e-39	75.38	NHP2-like protein 1 OS=Rattus norvegicus GN=Nhp2l1...	[more]
NH2L1_MOUSE	5.126e-39	75.38	NHP2-like protein 1 OS=Mus musculus GN=Nhp2l1 PE=2...	[more]
NH2L1_MACFA	5.126e-39	75.38	NHP2-like protein 1 OS=Macaca fascicularis GN=NHP2...	[more]
NH2L1_HUMAN	5.126e-39	75.38	NHP2-like protein 1 OS=Homo sapiens GN=NHP2L1 PE=1...	[more]
NH2L1_BOVIN	5.126e-39	75.38	NHP2-like protein 1 OS=Bos taurus GN=NHP2L1 PE=2 S...	[more]
NH2L1_CAEEL	2.508e-38	71.64	NHP2-like protein 1 homolog OS=Caenorhabditis eleg...	[more]
SNU13_SCHPO	7.240e-38	72.73	13 kDa ribonucleoprotein-associated protein OS=Sch...	[more]
SNU13_YARLI	6.481e-36	64.06	13 kDa ribonucleoprotein-associated protein OS=Yar...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_01315 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01315 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BQ624224 ID=BQ624224; Name=BQ624224; organism=Citrus sinensis; type=EST; length=675bp
AAATGGTATCTTCTTCTCCCGCAAATTCTTAAAGATTCATTTTTTTTTCC
TGAAGTAATTTTTGCCAATTTGTTTTTTGTTTTATTTTTAATTGAATTTG
CAGAGCGGAGAATCCGTAAACTCGAAGGCGTACCCATTGGCAGATTCACA
TCTGACAATTACATTAATGGATCTTGTTCAACAAGCTGCCAACTACAAGC
TCCTCAAAAAGGGCGCCAATGAAGCAACCAAGACTCTTAACAAGGGTACT
TCCGAATTTATTGTGATGGCTGCTGATACTGAGCCTCTTGAGATCTTCTT
CATCTTCCCCTGCTAGCTGAAGACAAGTTGCAATTCCAAACCCTGGTAGA
TGCAAGGACAAAGCGTCTTTTACCTGGTGTCGGAAGAATGTTCCCTATGT
GTTTGTCCCTTCAAAACAAGCTCTTGGCCGAGCATGTGGGGTTACAAGAC
CTGTCGTTGCTTGCTCTGTGACATCGAATGAGGCTAGCCAACTGAAAACT
CAGATTCAACAACTGAAGGATGCCATCGAAAAGCTCTTGATATGAAATAT
AAGAGGATTCATATTCAGTGTGATGGGCCTCTTGGATGGAGGTTACTCCT
TTAGAGGCTTTGACTGATGAAGTAGTTGTGCCCCTAGGAAATCATCTAAC
AGTATCTCCATACTCTTATTTCCCC