BQ624226

Overview
NameBQ624226
Unique NameBQ624226
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length657
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ624226 vs. ExPASy Swiss-Prot
Match: SMD2_DROME (Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster GN=snRNP2 PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 4.979e-39
Identity = 77/85 (90.59%), Postives = 81/85 (95.29%), Query Frame = 3
Query:  105 LSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 359
            LSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTELP+TGKGKKK  PVNKDRFISKMFLRGDSVI+VLRNP
Sbjct:   28 LSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKVKPVNKDRFISKMFLRGDSVILVLRNP 112          
BLAST of BQ624226 vs. ExPASy Swiss-Prot
Match: SMD2_MOUSE (Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus GN=Snrpd2 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.449e-38
Identity = 77/99 (77.78%), Postives = 89/99 (89.90%), Query Frame = 3
Query:   72 KMRKRNSTQVH---LSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 359
            +++KR   + +   LSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct:   15 ELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113          
BLAST of BQ624226 vs. ExPASy Swiss-Prot
Match: SMD2_HUMAN (Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens GN=SNRPD2 PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.449e-38
Identity = 77/99 (77.78%), Postives = 89/99 (89.90%), Query Frame = 3
Query:   72 KMRKRNSTQVH---LSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 359
            +++KR   + +   LSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct:   15 ELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113          
BLAST of BQ624226 vs. ExPASy Swiss-Prot
Match: SMD2_BOVIN (Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus GN=SNRPD2 PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.449e-38
Identity = 77/99 (77.78%), Postives = 89/99 (89.90%), Query Frame = 3
Query:   72 KMRKRNSTQVH---LSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 359
            +++KR   + +   LSVL  SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP
Sbjct:   15 ELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113          
BLAST of BQ624226 vs. ExPASy Swiss-Prot
Match: SMD2_DICDI (Probable small nuclear ribonucleoprotein Sm D2 OS=Dictyostelium discoideum GN=snrpd2 PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.038e-36
Identity = 73/85 (85.88%), Postives = 80/85 (94.12%), Query Frame = 3
Query:  105 LSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 359
            LS+LM SV NNTQVLIN RNNKKLLGRVRAFDRHCNMVLENV+E+WTE+PKT KGKKKA P+NKDRFISKMFLRGDSVI+VL+NP
Sbjct:   20 LSILMDSVNNNTQVLINVRNNKKLLGRVRAFDRHCNMVLENVKEIWTEVPKTAKGKKKAKPINKDRFISKMFLRGDSVILVLKNP 104          
BLAST of BQ624226 vs. ExPASy Swiss-Prot
Match: SMD2_CAEEL (Probable small nuclear ribonucleoprotein Sm D2 OS=Caenorhabditis elegans GN=snr-4 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 8.789e-36
Identity = 72/85 (84.71%), Postives = 79/85 (92.94%), Query Frame = 3
Query:  105 LSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 359
            LS+L  SVKNN QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PKTGKGKKKA  V KDRFISKMFLRGDSVI+V++NP
Sbjct:   29 LSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKSVAKDRFISKMFLRGDSVILVVKNP 113          
BLAST of BQ624226 vs. ExPASy Swiss-Prot
Match: SMD2_SCHPO (Probable small nuclear ribonucleoprotein Sm D2 OS=Schizosaccharomyces pombe GN=smd2 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.809e-28
Identity = 61/85 (71.76%), Postives = 70/85 (82.35%), Query Frame = 3
Query:  105 LSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 359
            LSVL  +VKN+ QVLINCRNNKKLL RV+AFDRH NMVLENV+EMWTE  +T  G KK   +NKDRFISKMFLRGD V++V+R P
Sbjct:   30 LSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTEKKRTASG-KKGKAINKDRFISKMFLRGDGVVLVVRIP 113          
BLAST of BQ624226 vs. ExPASy Swiss-Prot
Match: SMD2_YEAST (Small nuclear ribonucleoprotein Sm D2 OS=Saccharomyces cerevisiae GN=SMD2 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.506e-19
Identity = 46/85 (54.12%), Postives = 64/85 (75.29%), Query Frame = 3
Query:  105 LSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 359
            +S++  ++   T V+I+ RNN K++ RV+AFDRHCNMVLENV+E+WTE       KK    +N++RFISK+FLRGDSVI+VL+ P
Sbjct:   31 MSLINDAMVTRTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE-------KKGKNVINRERFISKLFLRGDSVIVVLKTP 108          
The following BLAST results are available for this feature:
BLAST of BQ624226 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SMD2_DROME4.979e-3990.59Probable small nuclear ribonucleoprotein Sm D2 OS=... [more]
SMD2_MOUSE1.449e-3877.78Small nuclear ribonucleoprotein Sm D2 OS=Mus muscu... [more]
SMD2_HUMAN1.449e-3877.78Small nuclear ribonucleoprotein Sm D2 OS=Homo sapi... [more]
SMD2_BOVIN1.449e-3877.78Small nuclear ribonucleoprotein Sm D2 OS=Bos tauru... [more]
SMD2_DICDI1.038e-3685.88Probable small nuclear ribonucleoprotein Sm D2 OS=... [more]
SMD2_CAEEL8.789e-3684.71Probable small nuclear ribonucleoprotein Sm D2 OS=... [more]
SMD2_SCHPO8.809e-2871.76Probable small nuclear ribonucleoprotein Sm D2 OS=... [more]
SMD2_YEAST1.506e-1954.12Small nuclear ribonucleoprotein Sm D2 OS=Saccharom... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_01317 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01317 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ624226 ID=BQ624226; Name=BQ624226; organism=Citrus sinensis; type=EST; length=657bp
TTGTCGTTCAGTCTTGGCTTGAAGAAGCAAATTGTCAAACATGAGTCGGC
CGATGGAGGAAGATAATGTCAAAAATGAGGAAGAGGAATTCAACACAGGT
CCACCTTTCTGTTTTGATGATGAGTGTTAAAAACAATACCCAGGTGCTTA
TTAACTGTCGGAACAACAAGAAGCTTCTTGGTCGTGTGAGAGCTTTTGAT
CGTCACTGCAATATGGTTCTTGAGAATGTCAGGGAGATGTGGACTGAGTT
GCCTAAGACTGGGAAAGGCAAGAAAAAGGCTCTTCCAGTTAACAAGGATA
GATTCATCAGTAAGATGTTTCTCCGAGGAGATTCTGTGATCATTGTTCTT
AGGAATCCCAAGTGAAGTACACACCTAGCTTGACAGCCTCAGCAATTTTA
ACGAAAGATCTATATGGACAATACTGTTTGTGATGGGTAAAAAATGAGCC
AGCAAGCCTAGATTTGTTTGAAGGATGTTCGCATGGTATTTGTGCAATTG
TGCTGCCAAGTTTGGGAGATTGGTTGGAGTATCTTAGGTGTCCTGACATA
AGGGTGACTTTTTTGGTGTGTTGTAAATTCAATGGACTAGAGATGTTATG
GGGTGTAGCTCTTTACTATTTTCTACTTCTAATGCTCGTTTACTTTTATT
AAAATAT
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