BQ624226
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of BQ624226 vs. ExPASy Swiss-Prot
Match: SMD2_DROME (Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila melanogaster GN=snRNP2 PE=1 SV=1) HSP 1 Score: 160.999 bits (406), Expect = 4.979e-39 Identity = 77/85 (90.59%), Postives = 81/85 (95.29%), Query Frame = 3 Query: 105 LSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 359 LSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTELP+TGKGKKK PVNKDRFISKMFLRGDSVI+VLRNP Sbjct: 28 LSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTELPRTGKGKKKVKPVNKDRFISKMFLRGDSVILVLRNP 112
BLAST of BQ624226 vs. ExPASy Swiss-Prot
Match: SMD2_MOUSE (Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus GN=Snrpd2 PE=2 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 1.449e-38 Identity = 77/99 (77.78%), Postives = 89/99 (89.90%), Query Frame = 3 Query: 72 KMRKRNSTQVH---LSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 359 +++KR + + LSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP Sbjct: 15 ELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
BLAST of BQ624226 vs. ExPASy Swiss-Prot
Match: SMD2_HUMAN (Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens GN=SNRPD2 PE=1 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 1.449e-38 Identity = 77/99 (77.78%), Postives = 89/99 (89.90%), Query Frame = 3 Query: 72 KMRKRNSTQVH---LSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 359 +++KR + + LSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP Sbjct: 15 ELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
BLAST of BQ624226 vs. ExPASy Swiss-Prot
Match: SMD2_BOVIN (Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus GN=SNRPD2 PE=3 SV=1) HSP 1 Score: 159.458 bits (402), Expect = 1.449e-38 Identity = 77/99 (77.78%), Postives = 89/99 (89.90%), Query Frame = 3 Query: 72 KMRKRNSTQVH---LSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 359 +++KR + + LSVL SVKNNTQVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PK+GKGKKK+ PVNKDR+ISKMFLRGDSVI+VLRNP Sbjct: 15 ELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113
BLAST of BQ624226 vs. ExPASy Swiss-Prot
Match: SMD2_DICDI (Probable small nuclear ribonucleoprotein Sm D2 OS=Dictyostelium discoideum GN=snrpd2 PE=3 SV=1) HSP 1 Score: 153.295 bits (386), Expect = 1.038e-36 Identity = 73/85 (85.88%), Postives = 80/85 (94.12%), Query Frame = 3 Query: 105 LSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 359 LS+LM SV NNTQVLIN RNNKKLLGRVRAFDRHCNMVLENV+E+WTE+PKT KGKKKA P+NKDRFISKMFLRGDSVI+VL+NP Sbjct: 20 LSILMDSVNNNTQVLINVRNNKKLLGRVRAFDRHCNMVLENVKEIWTEVPKTAKGKKKAKPINKDRFISKMFLRGDSVILVLKNP 104
BLAST of BQ624226 vs. ExPASy Swiss-Prot
Match: SMD2_CAEEL (Probable small nuclear ribonucleoprotein Sm D2 OS=Caenorhabditis elegans GN=snr-4 PE=1 SV=1) HSP 1 Score: 150.214 bits (378), Expect = 8.789e-36 Identity = 72/85 (84.71%), Postives = 79/85 (92.94%), Query Frame = 3 Query: 105 LSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 359 LS+L SVKNN QVLINCRNNKKLLGRV+AFDRHCNMVLENV+EMWTE+PKTGKGKKKA V KDRFISKMFLRGDSVI+V++NP Sbjct: 29 LSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKAKSVAKDRFISKMFLRGDSVILVVKNP 113
BLAST of BQ624226 vs. ExPASy Swiss-Prot
Match: SMD2_SCHPO (Probable small nuclear ribonucleoprotein Sm D2 OS=Schizosaccharomyces pombe GN=smd2 PE=2 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 8.809e-28 Identity = 61/85 (71.76%), Postives = 70/85 (82.35%), Query Frame = 3 Query: 105 LSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 359 LSVL +VKN+ QVLINCRNNKKLL RV+AFDRH NMVLENV+EMWTE +T G KK +NKDRFISKMFLRGD V++V+R P Sbjct: 30 LSVLQQAVKNHDQVLINCRNNKKLLARVKAFDRHSNMVLENVKEMWTEKKRTASG-KKGKAINKDRFISKMFLRGDGVVLVVRIP 113
BLAST of BQ624226 vs. ExPASy Swiss-Prot
Match: SMD2_YEAST (Small nuclear ribonucleoprotein Sm D2 OS=Saccharomyces cerevisiae GN=SMD2 PE=1 SV=2) HSP 1 Score: 96.2857 bits (238), Expect = 1.506e-19 Identity = 46/85 (54.12%), Postives = 64/85 (75.29%), Query Frame = 3 Query: 105 LSVLMMSVKNNTQVLINCRNNKKLLGRVRAFDRHCNMVLENVREMWTELPKTGKGKKKALPVNKDRFISKMFLRGDSVIIVLRNP 359 +S++ ++ T V+I+ RNN K++ RV+AFDRHCNMVLENV+E+WTE KK +N++RFISK+FLRGDSVI+VL+ P Sbjct: 31 MSLINDAMVTRTPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTE-------KKGKNVINRERFISKLFLRGDSVIVVLKTP 108 The following BLAST results are available for this feature:
BLAST of BQ624226 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >BQ624226 ID=BQ624226; Name=BQ624226; organism=Citrus sinensis; type=EST; length=657bpback to top |