BQ624228

Overview
NameBQ624228
Unique NameBQ624228
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ624228 vs. ExPASy Swiss-Prot
Match: U49A7_ARATH (UPF0497 membrane protein At5g40300 OS=Arabidopsis thaliana GN=At5g40300 PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.229e-35
Identity = 70/117 (59.83%), Postives = 84/117 (71.79%), Query Frame = 3
Query:    3 GWARDSFYRYKEFSYCLAVNVIVFVYSGFQSFDLAYRLTAGHRKPRQILRYYLDFSLDQILTYXXXXXXXXXXVRVDDWQSNWGEDEFPDMAKASVALSFLAFVALGFSSLISGYAL 353
            GWA DSFY YKEF +CLA NVI FVYSGF   DL Y L+   R+ R  LR++L+F LDQ+L Y          +RVDDWQSNWG D+FPD+A+ASVALS+++FVA  F SL SGYAL
Sbjct:  148 GWAHDSFYNYKEFRFCLAANVIGFVYSGFMICDLVYLLSTSIRRSRHNLRHFLEFGLDQMLAYLLASASTSASIRVDDWQSNWGADKFPDLARASVALSYVSFVAFAFCSLASGYAL 264          
BLAST of BQ624228 vs. ExPASy Swiss-Prot
Match: U497A_ARATH (UPF0497 membrane protein At2g36330 OS=Arabidopsis thaliana GN=At2g36330 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.934e-32
Identity = 67/122 (54.92%), Postives = 82/122 (67.21%), Query Frame = 3
Query:    3 GWARDSFYRYKEFSYCLAVNVIVFVYSGFQSFDLAYRLTAGHRKPRQILRYYLDFSLDQILTYXXXXXXXXXXVRVDDWQSNWGEDEFPDMAKASVALSFLAFVALGFSSLISGYALYNQKS 368
            GW+ DSF RYKE+ +CL+VNV+ FVYS FQ+ DLAY L          LR   +F +DQ+L Y           RVDDW SNWG+DEF +MA AS+A+SFLAF+A  FSSLISGY L+NQ S
Sbjct:  161 GWSGDSFDRYKEYRFCLSVNVVAFVYSSFQACDLAYHLVKEKHLISHHLRPLFEFIIDQVLAYLLMSASTAAVTRVDDWVSNWGKDEFTEMASASIAMSFLAFLAFAFSSLISGYNLFNQGS 282          
BLAST of BQ624228 vs. ExPASy Swiss-Prot
Match: U49D7_ARATH (UPF0497 membrane protein At5g62820 OS=Arabidopsis thaliana GN=At5g62820 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 6.083e-25
Identity = 59/122 (48.36%), Postives = 72/122 (59.02%), Query Frame = 3
Query:    3 GWARDSFYRYKEFSYCLAVNVIVFVYSGFQSFDLAYRLTAGHRKPRQILRYYLDFSLDQILTYXXXXXXXXXXVRVDDWQSNWGEDEFPDMAKASVALSFLAFVALGFSSLISGYALYNQKS 368
            GW+ DS+ RYKE+ YCLAVNVI FVYS F++ D A  +                FS+DQ+L Y           RVDDW SNWG+DEF  MA AS+A+SFLAF A   S+LIS Y L+   S
Sbjct:  175 GWSGDSYDRYKEYRYCLAVNVIAFVYSAFEACDAACYIAKESYMINCGFHDLFVFSMDQLLAYLLMSASSCAATRVDDWVSNWGKDEFTQMATASIAVSFLAFGAFAVSALISSYRLFTHAS 296          
BLAST of BQ624228 vs. ExPASy Swiss-Prot
Match: U4975_SORBI (UPF0497 membrane protein Sb04g002820 OS=Sorghum bicolor GN=Sb04g002820 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.454e-20
Identity = 52/120 (43.33%), Postives = 63/120 (52.50%), Query Frame = 3
Query:    3 GWARDSFYRYKEFSYCLAVNVIVFVYSGFQSFDLAYRLTAGHRKPRQILRYYLDFSLDQILTYXXXXXXXXXXVRVDDWQSNWGEDEFPDMAKASVALSFLAFVALGFSSLISGYALYNQ 362
            GWARDS+  Y +F Y  AVNVI F+YS FQ   L   +           R   DF++DQ+LTY           RV D   NWG D FP MA  S+A+SFLAF      SLIS Y L+ +
Sbjct:  331 GWARDSYSNYTQFRYSEAVNVIGFIYSVFQFVALVELMRRNKHLIPHPKRDLFDFTMDQVLTYLLISSSSSATARVSDLIDNWGSDPFPSMANGSIAISFLAFAVFAICSLISAYNLFRR 450          
BLAST of BQ624228 vs. ExPASy Swiss-Prot
Match: U497G_MAIZE (UPF0497 membrane protein 16 OS=Zea mays PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.005e-19
Identity = 50/120 (41.67%), Postives = 64/120 (53.33%), Query Frame = 3
Query:    3 GWARDSFYRYKEFSYCLAVNVIVFVYSGFQSFDLAYRLTAGHRKPRQILRYYLDFSLDQILTYXXXXXXXXXXVRVDDWQSNWGEDEFPDMAKASVALSFLAFVALGFSSLISGYALYNQ 362
            GWARDS+  Y +F Y  AVNV+ F+YS FQ   LA  +           R   DF++DQ+L Y           R  D   NWG D FP+MA  S+A+SF+AFV     SLIS Y L+ +
Sbjct:  185 GWARDSYSNYAQFRYSEAVNVVGFLYSVFQFVALAELMRRNTHLIPHPKRGLFDFTMDQVLAYLLISSSSSATARASDLTENWGSDSFPNMANGSIAISFVAFVVFAICSLISAYNLFRR 304          
BLAST of BQ624228 vs. ExPASy Swiss-Prot
Match: U497R_ORYSJ (UPF0497 membrane protein Os02g0134500 OS=Oryza sativa subsp. japonica GN=Os02g0134500 PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.313e-19
Identity = 53/121 (43.80%), Postives = 69/121 (57.02%), Query Frame = 3
Query:    3 GWARDSFYRYKEFSYCLAVNVIVFVYSGFQSFDLAYRLTAG-HRKPRQILRYYLDFSLDQILTYXXXXXXXXXXVRVDDWQSNWGEDEFPDMAKASVALSFLAFVALGFSSLISGYALYNQ 362
            G+A DS+  Y +  Y  AVNVI FVYS  Q F LA  +    H  PR+   Y+ DF +DQ+L Y           RV DW  NWG D FP MA +S+A+SF+AF+    S+LIS Y L+ +
Sbjct:  187 GFALDSYSNYSQLRYSEAVNVIGFVYSVLQFFVLADLMRRNKHLNPRRKGDYF-DFFMDQVLAYLLISSSSSATARVGDWIDNWGSDPFPKMANSSIAISFMAFLVFAISALISAYNLFRR 306          
BLAST of BQ624228 vs. ExPASy Swiss-Prot
Match: U497F_MAIZE (UPF0497 membrane protein 15 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.819e-19
Identity = 49/120 (40.83%), Postives = 63/120 (52.50%), Query Frame = 3
Query:    3 GWARDSFYRYKEFSYCLAVNVIVFVYSGFQSFDLAYRLTAGHRKPRQILRYYLDFSLDQILTYXXXXXXXXXXVRVDDWQSNWGEDEFPDMAKASVALSFLAFVALGFSSLISGYALYNQ 362
            GWARDS+  Y +F Y  AVNV+ F+YS FQ   LA  +           R   DF++DQ++ Y           R  D   NWG D FP MA  S+A+SF+AFV     SLIS Y L+ +
Sbjct:  181 GWARDSYSNYAQFRYSEAVNVVGFLYSVFQFVALAELMRRNKHLIPHPKRDLFDFTMDQVVAYLLISSSSSATARASDLIENWGSDSFPSMANGSIAISFVAFVVFAICSLISAYNLFRR 300          
BLAST of BQ624228 vs. ExPASy Swiss-Prot
Match: U497H_MAIZE (UPF0497 membrane protein 17 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.554e-12
Identity = 42/119 (35.29%), Postives = 60/119 (50.42%), Query Frame = 3
Query:    3 GWARDSFYRYKEFSYCLAVNVIVFVYSGFQSFDLAYRLTAGHRKPRQILRYYLDFSLDQILTYXXXXXXXXXXVRVDDWQSNWGEDEFPDMAKASVALSFLAFVALGFSSLISGYALYN 359
            GWA D + R+ ++ Y +AVNVIVF YS  QS      L +     R +  YY    LDQ+L Y           R D W S +G D F      ++ LSF+AF+ L  +++IS   L++
Sbjct:  249 GWAGDYYARHLQYRYAVAVNVIVFAYSVAQSLGKIRHLVSPRFTFRTMSSYYCSLFLDQVLAYLLMSASSAAASRNDLWVSRFGTDAFVRKITGALWLSFVAFLVLALNAVISXANLFS 367          
BLAST of BQ624228 vs. ExPASy Swiss-Prot
Match: U4974_SORBI (UPF0497 membrane protein Sb03g029220 OS=Sorghum bicolor GN=Sb03g029220 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.007e-11
Identity = 43/119 (36.13%), Postives = 60/119 (50.42%), Query Frame = 3
Query:    3 GWARDSFYRYKEFSYCLAVNVIVFVYSGFQSFDLAYRLTAGHRKPRQILRYYLDFSLDQILTYXXXXXXXXXXVRVDDWQSNWGEDEFPDMAKASVALSFLAFVALGFSSLISGYALYN 359
            GWA D +  + ++ Y +AVNVIV  YS  QSF    RL +     R +  YY    LDQ L Y           R D W S +G D F     +++ LSF+AF+ L  ++LIS   L++
Sbjct:  341 GWAGDYYAHHLQYRYAVAVNVIVCAYSIAQSFGEIRRLISPRFIFRSMSSYYCSLFLDQALAYLLMSASSAAASRNDLWVSRFGTDAFNRKITSALWLSFIAFLMLALNALISTANLFS 459          
The following BLAST results are available for this feature:
BLAST of BQ624228 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
U49A7_ARATH2.229e-3559.83UPF0497 membrane protein At5g40300 OS=Arabidopsis ... [more]
U497A_ARATH3.934e-3254.92UPF0497 membrane protein At2g36330 OS=Arabidopsis ... [more]
U49D7_ARATH6.083e-2548.36UPF0497 membrane protein At5g62820 OS=Arabidopsis ... [more]
U4975_SORBI3.454e-2043.33UPF0497 membrane protein Sb04g002820 OS=Sorghum bi... [more]
U497G_MAIZE1.005e-1941.67UPF0497 membrane protein 16 OS=Zea mays PE=2 SV=2[more]
U497R_ORYSJ1.313e-1943.80UPF0497 membrane protein Os02g0134500 OS=Oryza sat... [more]
U497F_MAIZE3.819e-1940.83UPF0497 membrane protein 15 OS=Zea mays PE=2 SV=1[more]
U497H_MAIZE1.554e-1235.29UPF0497 membrane protein 17 OS=Zea mays PE=2 SV=1[more]
U4974_SORBI1.007e-1136.13UPF0497 membrane protein Sb03g029220 OS=Sorghum bi... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_01319 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01319 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ624228 ID=BQ624228; Name=BQ624228; organism=Citrus sinensis; type=EST; length=612bp
GGGGATGGGCTCGCGATTCTTTCTATCGTTACAAAGAGTTCAGCTACTGT
TTGGCAGTGAATGTGATCGTTTTTGTGTATTCTGGGTTTCAATCATTTGA
TTTAGCCTATCGATTGACTGCCGGACATCGCAAACCACGGCAGATTCTCC
GGTATTACTTGGATTTTTCATTGGACCAGATATTGACTTATCTTCTTCTA
TCTGCATCGTCTTCGGCTGCTGTCCGGGTAGATGATTGGCAATCCAACTG
GGGCGAAGACGAGTTCCCAGATATGGCGAAGGCATCCGTGGCATTGTCTT
TCCTTGCATTTGTTGCCTTAGGCTTCAGCTCACTCATATCTGGTTATGCC
CTTTATAATCAGAAATCAAGGTAGTCATACTGTTGCCTGGATCACATACA
TTACACACATACATATTACACGTGACACGGTCTTGATTGTCGAGGGCAAT
ATTAATGCAAAAGCTTTATTTCAAAATATGTACAGAAAATGTCTTCAATA
TATTTAGTTGAATGATAGGGATTGTATACACATCACCTCAATCATGGAGA
CACTGTACTGCAAACTCCATTTTTGCTTAAAAGATTTCTCGGATTTTATG
TTAACACATACG
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