BQ624235

Overview
NameBQ624235
Unique NameBQ624235
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length558
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ624235 vs. ExPASy Swiss-Prot
Match: PSAH_BRARA (Photosystem I reaction center subunit VI, chloroplastic OS=Brassica rapa GN=PSAH PE=2 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.887e-41
Identity = 79/94 (84.04%), Postives = 85/94 (90.43%), Query Frame = 3
Query:    9 KALEAASLAGTKLTVKPTRQNLRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILG 290
            K L  +SL G KL +KP+RQ+ +PKS +AGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFLILG
Sbjct:   17 KGLGGSSLTGAKLFIKPSRQSFKPKSTRAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILG 110          

HSP 2 Score: 24.2534 bits (51), Expect = 4.887e-41
Identity = 9/16 (56.25%), Postives = 13/16 (81.25%), Query Frame = 1
Query:  292 GGSTLAYFSATASGDI 339
            GGS L Y SA+++GD+
Sbjct:  111 GGSLLTYVSASSTGDV 126          
BLAST of BQ624235 vs. ExPASy Swiss-Prot
Match: PSAH2_ARATH (Photosystem I reaction center subunit VI-2, chloroplastic OS=Arabidopsis thaliana GN=PSAH2 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 4.061e-40
Identity = 78/94 (82.98%), Postives = 85/94 (90.43%), Query Frame = 3
Query:    9 KALEAASLAGTKLTVKPTRQNLRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILG 290
            K L  +SLAG KL +KP+RQ+ + KS +AGAVVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFLILG
Sbjct:   17 KGLGGSSLAGAKLFIKPSRQSFKTKSTRAGAVVAKYGDKSVYFDLEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILG 110          

HSP 2 Score: 23.8682 bits (50), Expect = 4.061e-40
Identity = 9/16 (56.25%), Postives = 12/16 (75.00%), Query Frame = 1
Query:  292 GGSTLAYFSATASGDI 339
            GGS L Y SA ++GD+
Sbjct:  111 GGSLLTYVSANSTGDV 126          
BLAST of BQ624235 vs. ExPASy Swiss-Prot
Match: PSAH1_ARATH (Photosystem I reaction center subunit VI-1, chloroplastic OS=Arabidopsis thaliana GN=PSAH1 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 8.983e-40
Identity = 76/94 (80.85%), Postives = 84/94 (89.36%), Query Frame = 3
Query:    9 KALEAASLAGTKLTVKPTRQNLRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILG 290
            K L  +SLAG KL++KP+R + +PKS +A  VVAKYGDKSVYFDLEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFLILG
Sbjct:   17 KGLGGSSLAGAKLSIKPSRLSFKPKSIRANGVVAKYGDKSVYFDLEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILG 110          

HSP 2 Score: 24.2534 bits (51), Expect = 8.983e-40
Identity = 9/16 (56.25%), Postives = 13/16 (81.25%), Query Frame = 1
Query:  292 GGSTLAYFSATASGDI 339
            GGS L Y SAT++G++
Sbjct:  111 GGSLLTYVSATSTGEV 126          
BLAST of BQ624235 vs. ExPASy Swiss-Prot
Match: PSAH_SPIOL (Photosystem I reaction center subunit VI, chloroplastic OS=Spinacia oleracea GN=PSAH PE=1 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 6.699e-38
Identity = 73/94 (77.66%), Postives = 84/94 (89.36%), Query Frame = 3
Query:    9 KALEAASLAGTKLTVKPTRQNLRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILG 290
            K L  +S+AGTKL +KP RQ+ +  + ++GA+VAKYGDKSVYFDLED+ NTTGQWD+YGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILG
Sbjct:   16 KGLAGSSIAGTKLHIKPARQSFKLNNVRSGAIVAKYGDKSVYFDLEDIANTTGQWDVYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILG 109          
BLAST of BQ624235 vs. ExPASy Swiss-Prot
Match: PSAH_MAIZE (Photosystem I reaction center subunit VI, chloroplastic OS=Zea mays GN=PSAH PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 3.820e-34
Identity = 70/95 (73.68%), Postives = 82/95 (86.32%), Query Frame = 3
Query:    9 KALEAASLAGTKLTV-KPTRQNLRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILG 290
            K L  +S++G KL V +P+ +++R    +A AVVAKYGDKSVYFDL+D+GNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFL+LG
Sbjct:   15 KGLAGSSISGRKLAVARPSARSIRRP--RAAAVVAKYGDKSVYFDLDDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLLLG 107          

HSP 2 Score: 24.6386 bits (52), Expect = 3.820e-34
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 1
Query:  292 GGSTLAYFSATASGDI 339
            GGS LAY SA+AS D+
Sbjct:  108 GGSLLAYVSASASPDL 123          
BLAST of BQ624235 vs. ExPASy Swiss-Prot
Match: PSAH_ORYSJ (Photosystem I reaction center subunit VI, chloroplastic OS=Oryza sativa subsp. japonica GN=PSAH PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.164e-33
Identity = 69/95 (72.63%), Postives = 78/95 (82.11%), Query Frame = 3
Query:    9 KALEAASLAGTKLTVKPTRQNL-RPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILG 290
            K L  +S++G KL V+P+ + L R       AVVAKYG+KSVYFDLED+GNTTGQWDLYGSDAPSPYN LQSKFFETFA PFTKRGLLLKFL+LG
Sbjct:   13 KGLAGSSISGRKLAVRPSPRALCRTTRRPRAAVVAKYGEKSVYFDLEDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAGPFTKRGLLLKFLLLG 107          

HSP 2 Score: 23.483 bits (49), Expect = 3.164e-33
Identity = 10/16 (62.50%), Postives = 13/16 (81.25%), Query Frame = 1
Query:  292 GGSTLAYFSATASGDI 339
            GGS +AY SA+AS D+
Sbjct:  108 GGSLVAYVSASASPDL 123          
BLAST of BQ624235 vs. ExPASy Swiss-Prot
Match: PSAH_ORYSI (Photosystem I reaction center subunit VI, chloroplastic OS=Oryza sativa subsp. indica GN=PSAH PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 3.164e-33
Identity = 69/95 (72.63%), Postives = 78/95 (82.11%), Query Frame = 3
Query:    9 KALEAASLAGTKLTVKPTRQNL-RPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILG 290
            K L  +S++G KL V+P+ + L R       AVVAKYG+KSVYFDLED+GNTTGQWDLYGSDAPSPYN LQSKFFETFA PFTKRGLLLKFL+LG
Sbjct:   13 KGLAGSSISGRKLAVRPSPRALCRTTRRPRAAVVAKYGEKSVYFDLEDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAGPFTKRGLLLKFLLLG 107          

HSP 2 Score: 23.483 bits (49), Expect = 3.164e-33
Identity = 10/16 (62.50%), Postives = 13/16 (81.25%), Query Frame = 1
Query:  292 GGSTLAYFSATASGDI 339
            GGS +AY SA+AS D+
Sbjct:  108 GGSLVAYVSASASPDL 123          
BLAST of BQ624235 vs. ExPASy Swiss-Prot
Match: PSAH_HORVU (Photosystem I reaction center subunit VI, chloroplastic OS=Hordeum vulgare GN=PSAH PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.782e-32
Identity = 65/96 (67.71%), Postives = 78/96 (81.25%), Query Frame = 3
Query:    9 KALEAASLAGTKLTVKPTRQNLRPKSFKA--GAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILG 290
            K L  +S++G KL V+P+   +   + +A   AVVAKYG+KSVYFDL+D+ NTTGQWDLYGSDAPSPYN LQSKFF TFAAPFTKRGLLLKFL++G
Sbjct:   13 KGLSGSSISGRKLAVRPSSAAVSRSTRRARGAAVVAKYGEKSVYFDLDDIANTTGQWDLYGSDAPSPYNGLQSKFFNTFAAPFTKRGLLLKFLLIG 108          

HSP 2 Score: 23.483 bits (49), Expect = 5.782e-32
Identity = 10/16 (62.50%), Postives = 13/16 (81.25%), Query Frame = 1
Query:  292 GGSTLAYFSATASGDI 339
            GGS +AY SA+AS D+
Sbjct:  109 GGSLVAYVSASASPDL 124          
BLAST of BQ624235 vs. ExPASy Swiss-Prot
Match: PSAH_PEA (Photosystem I reaction center subunit VI (Fragment) OS=Pisum sativum GN=PSAH PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.746e-14
Identity = 33/36 (91.67%), Postives = 35/36 (97.22%), Query Frame = 3
Query:  111 KYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQ 218
            KYGDKSVYFDLED+GNTTGQWDLYGSDAPSPY+ LQ
Sbjct:    1 KYGDKSVYFDLEDIGNTTGQWDLYGSDAPSPYSXLQ 36          
The following BLAST results are available for this feature:
BLAST of BQ624235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
PSAH_BRARA4.887e-4184.04Photosystem I reaction center subunit VI, chloropl... [more]
PSAH2_ARATH4.061e-4082.98Photosystem I reaction center subunit VI-2, chloro... [more]
PSAH1_ARATH8.983e-4080.85Photosystem I reaction center subunit VI-1, chloro... [more]
PSAH_SPIOL6.699e-3877.66Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_MAIZE3.820e-3473.68Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_ORYSJ3.164e-3372.63Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_ORYSI3.164e-3372.63Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_HORVU5.782e-3267.71Photosystem I reaction center subunit VI, chloropl... [more]
PSAH_PEA6.746e-1491.67Photosystem I reaction center subunit VI (Fragment... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_01326 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01326 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ624235 ID=BQ624235; Name=BQ624235; organism=Citrus sinensis; type=EST; length=558bp
CACCATCAAAGGCCTTGGAGGCAGCCTCTCTTGCTGGAACTAAGCTCACC
GTCAAGCCAACTCGCCAGAATTTGAGACCCAAAAGCTTCAAGGCTGGTGC
TGTAGTGGCTAAGTATGGTGATAAGAGTGTGTACTTTGATTTGGAGGATT
TGGGCAACACTACGGGCCAGTGGGACTTGTACGGATCAGATGCTCCTTCA
CCGTACAACTCTCTTCAGAGCAAGTTCTTTGAGACATTTGCAGCTCCATT
CACCAAGAGAGGATTATTGCTCAAGTTCTTGATATTGGGAAGGAGGTTCA
ACCCTTGCTTACTTCAGTGCTACAGCTAGTGGTGACATTCTCCCAATCAA
GAAGGGCCCTCAACTTCCACCAAAGCTCGGACCACGTGGCAAGATCTAAA
TTAGTTTTCAATCCTCCTATTTTTAACTTTTCATTGTATGTATCTTCTTG
TTATTGTAAACCTGTAGGTTTGTCCAACATCCTACTTAAGACTTCCTTTG
TTATTAATGCCAATATATTTGCTTCAATTGAGACAGTAAAAAAAAAAAAA
AAAAAAAC
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