BQ624271

Overview
NameBQ624271
Unique NameBQ624271
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ624271 vs. ExPASy Swiss-Prot
Match: HAT22_ARATH (Homeobox-leucine zipper protein HAT22 OS=Arabidopsis thaliana GN=HAT22 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 6.676e-28
Identity = 62/96 (64.58%), Postives = 70/96 (72.92%), Query Frame = 2
Query:    2 EVDCEFLKKCCETLTDENRRLHKEPTRTQSSEA*PQPLYMHMPAATLTMCPSCERIGGGIADGN--------SKGPFPMGTKPHCYSPFTNPSAAC 265
            EVDCEFLKKCCETLTDENRRL KE    ++ +   QP YMHMPAATLTMCPSCER+GGG   G+        +KG F + TKP  Y+PFTNPSAAC
Sbjct:  184 EVDCEFLKKCCETLTDENRRLQKELQDLKALKL-SQPFYMHMPAATLTMCPSCERLGGGGVGGDTTAVDEETAKGAFSIVTKPRFYNPFTNPSAAC 278          
BLAST of BQ624271 vs. ExPASy Swiss-Prot
Match: HAT9_ARATH (Homeobox-leucine zipper protein HAT9 OS=Arabidopsis thaliana GN=HAT9 PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 1.392e-25
Identity = 60/105 (57.14%), Postives = 70/105 (66.67%), Query Frame = 2
Query:    2 EVDCEFLKKCCETLTDENRRLHKEPTRTQSSEA*PQPLYMHMPAATLTMCPSCERIGGG----------------IADGN-SKGPFPMGTKPHCYSPFTNPSAAC 265
            EVDCEFLKKCCETL DEN RL KE    ++ +   QP YMHMPA+TLT CPSCERIGGG                I DG+ +KG F + +KPH ++PFTNPSAAC
Sbjct:  171 EVDCEFLKKCCETLADENIRLQKEIQELKTLKL-TQPFYMHMPASTLTKCPSCERIGGGGGGNGGGGGGSGATAVIVDGSTAKGAFSISSKPHFFNPFTNPSAAC 274          
BLAST of BQ624271 vs. ExPASy Swiss-Prot
Match: HOX19_ORYSJ (Homeobox-leucine zipper protein HOX19 OS=Oryza sativa subsp. japonica GN=HOX19 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.543e-19
Identity = 55/110 (50.00%), Postives = 64/110 (58.18%), Query Frame = 2
Query:    2 EVDCEFLKKCCETLTDENRRLHKE---------------PTRTQSSEA*PQPLYMHMPAATLTMCPSCERIGGG-------IADGNSKGPFPMGTKPHCYSPFTNPSAAC 265
            EVDCEFLK+CCETLT+ENRRL +E                   Q S A P P YM +PAATLT+CPSCER+GG         ADG   GP    T  H ++PFT+ SAAC
Sbjct:  185 EVDCEFLKRCCETLTEENRRLQRELQELRALKFAPPPPSSAAHQPSPAPPAPFYMQLPAATLTICPSCERVGGPASAAKVVAADGTKAGP-GRTTTHHFFNPFTH-SAAC 292          
BLAST of BQ624271 vs. ExPASy Swiss-Prot
Match: HOX19_ORYSI (Homeobox-leucine zipper protein HOX19 OS=Oryza sativa subsp. indica GN=HOX19 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.543e-19
Identity = 55/110 (50.00%), Postives = 64/110 (58.18%), Query Frame = 2
Query:    2 EVDCEFLKKCCETLTDENRRLHKE---------------PTRTQSSEA*PQPLYMHMPAATLTMCPSCERIGGG-------IADGNSKGPFPMGTKPHCYSPFTNPSAAC 265
            EVDCEFLK+CCETLT+ENRRL +E                   Q S A P P YM +PAATLT+CPSCER+GG         ADG   GP    T  H ++PFT+ SAAC
Sbjct:  185 EVDCEFLKRCCETLTEENRRLQRELQELRALKFAPPPPSSAAHQPSPAPPAPFYMQLPAATLTICPSCERVGGPASAAKVVAADGTKAGP-GRTTTHHFFNPFTH-SAAC 292          
BLAST of BQ624271 vs. ExPASy Swiss-Prot
Match: HOX27_ORYSJ (Homeobox-leucine zipper protein HOX27 OS=Oryza sativa subsp. japonica GN=HOX27 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.108e-17
Identity = 43/87 (49.43%), Postives = 56/87 (64.37%), Query Frame = 2
Query:    2 EVDCEFLKKCCETLTDENRRLHKEPTRTQSSEA*PQPLYMHMPAATLTMCPSCERIGGGIADGNSKGPFPMGTKPHCYSPFTNPSAA 262
            EVDCE+LK+CCETLT+ENRRLHKE    ++ +   +P YMH+PA TL+MCPSCER+    A  ++  P          SP   P+AA
Sbjct:  232 EVDCEYLKRCCETLTEENRRLHKELAELRALKT-ARPFYMHLPATTLSMCPSCERVASNPATASTSAP------AAATSPAAAPTAA 311          
BLAST of BQ624271 vs. ExPASy Swiss-Prot
Match: HOX27_ORYSI (Homeobox-leucine zipper protein HOX27 OS=Oryza sativa subsp. indica GN=HOX27 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 3.108e-17
Identity = 43/87 (49.43%), Postives = 56/87 (64.37%), Query Frame = 2
Query:    2 EVDCEFLKKCCETLTDENRRLHKEPTRTQSSEA*PQPLYMHMPAATLTMCPSCERIGGGIADGNSKGPFPMGTKPHCYSPFTNPSAA 262
            EVDCE+LK+CCETLT+ENRRLHKE    ++ +   +P YMH+PA TL+MCPSCER+    A  ++  P          SP   P+AA
Sbjct:  232 EVDCEYLKRCCETLTEENRRLHKELAELRALKT-ARPFYMHLPATTLSMCPSCERVASNPATASTSAP------AAATSPAAAPTAA 311          
BLAST of BQ624271 vs. ExPASy Swiss-Prot
Match: HOX11_ORYSJ (Homeobox-leucine zipper protein HOX11 OS=Oryza sativa subsp. japonica GN=HOX11 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.228e-15
Identity = 40/87 (45.98%), Postives = 52/87 (59.77%), Query Frame = 2
Query:    2 EVDCEFLKKCCETLTDENRRLHKEPTRTQSSEA*PQPLYMHMPAATLTMCPSCERIGGGIADGNSKGPFPMGTKPHCYSPFTNPSAA 262
            EVDCE+LK+CCETLT+ENRRL KE    ++ +    P YMH+PA TL+MCPSCER+    A   +       T     +P +   AA
Sbjct:  235 EVDCEYLKRCCETLTEENRRLQKELAELRALKT-VHPFYMHLPATTLSMCPSCERVASNSAPATASSAATSSTAAPPAAPSSGGIAA 320          
BLAST of BQ624271 vs. ExPASy Swiss-Prot
Match: HOX11_ORYSI (Homeobox-leucine zipper protein HOX11 OS=Oryza sativa subsp. indica GN=HOX11 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.228e-15
Identity = 40/87 (45.98%), Postives = 52/87 (59.77%), Query Frame = 2
Query:    2 EVDCEFLKKCCETLTDENRRLHKEPTRTQSSEA*PQPLYMHMPAATLTMCPSCERIGGGIADGNSKGPFPMGTKPHCYSPFTNPSAA 262
            EVDCE+LK+CCETLT+ENRRL KE    ++ +    P YMH+PA TL+MCPSCER+    A   +       T     +P +   AA
Sbjct:  148 EVDCEYLKRCCETLTEENRRLQKELAELRALKT-VHPFYMHLPATTLSMCPSCERVASNSAPATASSAATSSTAAPPAAPSSGGIAA 233          
BLAST of BQ624271 vs. ExPASy Swiss-Prot
Match: HAT14_ARATH (Homeobox-leucine zipper protein HAT14 OS=Arabidopsis thaliana GN=HAT14 PE=2 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 4.201e-14
Identity = 35/61 (57.38%), Postives = 44/61 (72.13%), Query Frame = 2
Query:    2 EVDCEFLKKCCETLTDENRRLHKEPTRTQSSEA*PQPLYMHMPAATLTMCPSCERIGGGIA 184
            EVDCE+LK+CCE+LT+ENRRL KE    ++ +    P YM +PA TLTMCPSCER+    A
Sbjct:  248 EVDCEYLKRCCESLTEENRRLQKEVKELRTLKT-STPFYMQLPATTLTMCPSCERVATSAA 307          
BLAST of BQ624271 vs. ExPASy Swiss-Prot
Match: HAT3_ARATH (Homeobox-leucine zipper protein HAT3 OS=Arabidopsis thaliana GN=HAT3 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 5.487e-14
Identity = 37/57 (64.91%), Postives = 44/57 (77.19%), Query Frame = 2
Query:    2 EVDCEFLKKCCETLTDENRRLHKEPTRTQSSEA*PQPLYMHM-PAATLTMCPSCERI 169
            EVDCE+LK+CCE LTDENRRL KE +  ++ +  P  LYMHM P  TLTMCPSCER+
Sbjct:  220 EVDCEYLKRCCENLTDENRRLQKEVSELRALKLSPH-LYMHMKPPTTLTMCPSCERV 275          
The following BLAST results are available for this feature:
BLAST of BQ624271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
HAT22_ARATH6.676e-2864.58Homeobox-leucine zipper protein HAT22 OS=Arabidops... [more]
HAT9_ARATH1.392e-2557.14Homeobox-leucine zipper protein HAT9 OS=Arabidopsi... [more]
HOX19_ORYSJ2.543e-1950.00Homeobox-leucine zipper protein HOX19 OS=Oryza sat... [more]
HOX19_ORYSI2.543e-1950.00Homeobox-leucine zipper protein HOX19 OS=Oryza sat... [more]
HOX27_ORYSJ3.108e-1749.43Homeobox-leucine zipper protein HOX27 OS=Oryza sat... [more]
HOX27_ORYSI3.108e-1749.43Homeobox-leucine zipper protein HOX27 OS=Oryza sat... [more]
HOX11_ORYSJ2.228e-1545.98Homeobox-leucine zipper protein HOX11 OS=Oryza sat... [more]
HOX11_ORYSI2.228e-1545.98Homeobox-leucine zipper protein HOX11 OS=Oryza sat... [more]
HAT14_ARATH4.201e-1457.38Homeobox-leucine zipper protein HAT14 OS=Arabidops... [more]
HAT3_ARATH5.487e-1464.91Homeobox-leucine zipper protein HAT3 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_01362 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01362 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ624271 ID=BQ624271; Name=BQ624271; organism=Citrus sinensis; type=EST; length=574bp
AGAAGTGGACTGTGAATTCTTGAAGAAATGCTGTGAAACACTAACTGATG
AAAACAGAAGGCTGCATAAGGAGCCTACAAGAACTCAAAGCTCTGAAGCC
TAGCCTCAGCCTCTTTACATGCATATGCCGGCAGCTACCCTGACGATGTG
CCCTTCTTGTGAACGGATCGGCGGCGGCATCGCCGATGGAAACTCGAAGG
GCCCGTTTCCCATGGGTACTAAGCCTCACTGCTATAGTCCCTTCACCAAT
CCTTCAGCAGCTTGTTGATTGAGTTGTTAGATAGGATTAGGAAAAGAAAA
TCAGATTAAATTAAATTATAAAAATTATATGGAACACTCCAACAAACCCC
GCTATTTTTTTTGGGTCAGGGCTTGTAGTGATCAGAGATATTAGTGTGAT
TAATTAAACTGTAGAAATTATTACTAGATGCTACAGATTATATATAGTTT
TATGTTAATTGCTAATTAATCTCCTTTTAAAATCATCTTCTTCTTCTTTT
TTTTTTTTATATGTTTGGAAATTGTGAAACAAATCAAGTTATATCTATGA
AAGCATTTTTAACTAAAAGCCCAC
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