BQ624272

Overview
NameBQ624272
Unique NameBQ624272
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length467
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ624272 vs. ExPASy Swiss-Prot
Match: PSAG_ARATH (Photosystem I reaction center subunit V, chloroplastic OS=Arabidopsis thaliana GN=PSAG PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.442e-41
Identity = 81/84 (96.43%), Postives = 82/84 (97.62%), Query Frame = 1
Query:    1 GLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDP 252
            GLSLFLGRFVFFNFQRENVAKQGLPEQNG THFEAGD RAKEYVSLLKSNDP+GFNIVDVLAWGSIGHIVAYYILATSSNGYDP
Sbjct:   73 GLSLFLGRFVFFNFQRENVAKQGLPEQNGKTHFEAGDDRAKEYVSLLKSNDPIGFNIVDVLAWGSIGHIVAYYILATSSNGYDP 156          
BLAST of BQ624272 vs. ExPASy Swiss-Prot
Match: PSAG_SPIOL (Photosystem I reaction center subunit V, chloroplastic OS=Spinacia oleracea GN=PSAG PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 8.746e-39
Identity = 77/84 (91.67%), Postives = 82/84 (97.62%), Query Frame = 1
Query:    1 GLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDP 252
            GLSLFLGRFVFFNFQREN+AKQ +PEQNG++HFEAGD RAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILAT+SNGYDP
Sbjct:   82 GLSLFLGRFVFFNFQRENMAKQ-VPEQNGMSHFEAGDTRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATASNGYDP 164          
BLAST of BQ624272 vs. ExPASy Swiss-Prot
Match: PSAG_HORVU (Photosystem I reaction center subunit V, chloroplastic OS=Hordeum vulgare GN=PSAG PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 4.063e-36
Identity = 72/84 (85.71%), Postives = 78/84 (92.86%), Query Frame = 1
Query:    1 GLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYDP 252
            GLSL +GRFVFFNFQRENVAKQ +PEQNG THFEAGD RAKE+  +LKSNDPVGFN+VDVLAWGSIGHIVAYYILAT+SNGYDP
Sbjct:   57 GLSLVMGRFVFFNFQRENVAKQ-VPEQNGKTHFEAGDERAKEFAGILKSNDPVGFNLVDVLAWGSIGHIVAYYILATTSNGYDP 139          
BLAST of BQ624272 vs. ExPASy Swiss-Prot
Match: PSAG_TORRU (Photosystem I reaction center subunit V, chloroplastic OS=Tortula ruralis GN=PSAG PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.551e-19
Identity = 44/80 (55.00%), Postives = 58/80 (72.50%), Query Frame = 1
Query:   10 LFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSNDPVGFNIVDVLAWGSIGHIVAYYILATSSNGYD 249
            L LGRFVF  FQR  V++ GLPEQNGV          + + S+LK+NDP GF +VDVLAWG++GH V ++ILAT++NGY+
Sbjct:   30 LALGRFVFLPFQRSMVSRHGLPEQNGVPTTRRVTAVRRRWWSMLKTNDPAGFTLVDVLAWGALGHAVGFFILATATNGYN 109          
The following BLAST results are available for this feature:
BLAST of BQ624272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PSAG_ARATH1.442e-4196.43Photosystem I reaction center subunit V, chloropla... [more]
PSAG_SPIOL8.746e-3991.67Photosystem I reaction center subunit V, chloropla... [more]
PSAG_HORVU4.063e-3685.71Photosystem I reaction center subunit V, chloropla... [more]
PSAG_TORRU1.551e-1955.00Photosystem I reaction center subunit V, chloropla... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_01363 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01363 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ624272 ID=BQ624272; Name=BQ624272; organism=Citrus sinensis; type=EST; length=467bp
GGCCTCTCGTTGTTCTTGGGCAGGTTCGTCTTCTTCAACTTCCAAAGAGA
GAACGTGGCCAAACAAGGCTTGCCCGAGCAGAATGGAGTCACCCACTTTG
AAGCCGGTGATGTTCGTGCCAAGGAATATGTTAGCCTCCTCAAATCCAAC
GACCCAGTTGGCTTTAACATTGTTGATGTTCTTGCTTGGGGTTCCATTGG
CCATATTGTCGCTTACTACATCTTGGCCACCTCCAGCAACGGCTATGATC
CCAAGTTCTTTGGTTGATTTTGTTATTTGTACTGTCTCTCTTTGTCTCTT
TTAGTTTCTTAATTTCTCAAGTGTTGCGCTTTGTATAGTTAAATAAATTT
CCTAGCATTTAATGGATGAGACCGATGATGTAATCTTTGCATTTTTCACG
TTTTTAACGTGCATGTTTTCTCTTTGTCACAGCTTGCAGGAAAAAAAAAA
ATAGAAACTGAAAACAA
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