BQ624275 | Citrus Genome Database

Overview


Name	BQ624275
Unique Name	BQ624275
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	606

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of BQ624275 vs. ExPASy Swiss-Prot
Match: UBC28_ARATH (Ubiquitin carrier protein E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 2.798e-78
Identity = 116/118 (98.31%), Postives = 118/118 (100.00%), Query Frame = 3

Query:  153 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 506
            MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPY+GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPN+NSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNVNSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 118

HSP 2 Score: 64.6994 bits (156), Expect = 2.798e-78
Identity = 28/31 (90.32%), Postives = 30/31 (96.77%), Query Frame = 1

Query:  505 PLVPEIAHMYKSDKAKYESTGRSWTQKYAMG 597
            PLVPEIAHMYK+D+AKYEST RSWTQKYAMG
Sbjct:  118 PLVPEIAHMYKTDRAKYESTARSWTQKYAMG 148

[Close]

BLAST of BQ624275 vs. ExPASy Swiss-Prot
Match: UBC10_ARATH (Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis thaliana GN=UBC10 PE=1 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 6.208e-78
Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 3

Query:  153 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 506
            MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPS+SPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSESPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 118

HSP 2 Score: 63.5438 bits (153), Expect = 6.208e-78
Identity = 28/31 (90.32%), Postives = 29/31 (93.55%), Query Frame = 1

Query:  505 PLVPEIAHMYKSDKAKYESTGRSWTQKYAMG 597
            PLVPEIAHMYK+DK KYEST RSWTQKYAMG
Sbjct:  118 PLVPEIAHMYKTDKNKYESTARSWTQKYAMG 148

[Close]

BLAST of BQ624275 vs. ExPASy Swiss-Prot
Match: UBC9_ARATH (SUMO-conjugating enzyme UBC9 OS=Arabidopsis thaliana GN=UBC9 PE=1 SV=1)

HSP 1 Score: 249.21 bits (635), Expect = 1.056e-77
Identity = 117/118 (99.15%), Postives = 118/118 (100.00%), Query Frame = 3

Query:  153 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 506
            MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPY+GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 118

HSP 2 Score: 62.3882 bits (150), Expect = 1.056e-77
Identity = 27/31 (87.10%), Postives = 29/31 (93.55%), Query Frame = 1

Query:  505 PLVPEIAHMYKSDKAKYESTGRSWTQKYAMG 597
            PLVPEIAHMYK+DK KYEST R+WTQKYAMG
Sbjct:  118 PLVPEIAHMYKTDKNKYESTARTWTQKYAMG 148

[Close]

BLAST of BQ624275 vs. ExPASy Swiss-Prot
Match: UBC4_SOLLC (Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 247.669 bits (631), Expect = 1.377e-77
Identity = 116/118 (98.31%), Postives = 118/118 (100.00%), Query Frame = 3

Query:  153 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 506
            MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP+DSPYAGGVFLV+IHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPTDSPYAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 118

HSP 2 Score: 63.5438 bits (153), Expect = 1.377e-77
Identity = 27/31 (87.10%), Postives = 30/31 (96.77%), Query Frame = 1

Query:  505 PLVPEIAHMYKSDKAKYESTGRSWTQKYAMG 597
            PLVPEIAHMYK+D+AKYE+T RSWTQKYAMG
Sbjct:  118 PLVPEIAHMYKTDRAKYETTARSWTQKYAMG 148

[Close]

BLAST of BQ624275 vs. ExPASy Swiss-Prot
Match: UBC8_ARATH (Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis thaliana GN=UBC8 PE=1 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 6.781e-77
Identity = 115/118 (97.46%), Postives = 118/118 (100.00%), Query Frame = 3

Query:  153 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 506
            MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGP++SPY+GGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP
Sbjct:    1 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 118

HSP 2 Score: 62.3882 bits (150), Expect = 6.781e-77
Identity = 26/31 (83.87%), Postives = 30/31 (96.77%), Query Frame = 1

Query:  505 PLVPEIAHMYKSDKAKYESTGRSWTQKYAMG 597
            PLVPEIAHMYK+D+AKYE+T R+WTQKYAMG
Sbjct:  118 PLVPEIAHMYKTDRAKYEATARNWTQKYAMG 148

[Close]

BLAST of BQ624275 vs. ExPASy Swiss-Prot
Match: UBC11_ARATH (Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis thaliana GN=UBC11 PE=2 SV=2)

HSP 1 Score: 239.195 bits (609), Expect = 4.755e-75
Identity = 110/118 (93.22%), Postives = 117/118 (99.15%), Query Frame = 3

Query:  153 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 506
            MASKRILKELKDLQKDPP++CSAGPVAEDMFHWQATIMGP +SPYAGGVFLV+IHFPPDYPFKPPKV+F+TKV+HPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP
Sbjct:    1 MASKRILKELKDLQKDPPSNCSAGPVAEDMFHWQATIMGPPESPYAGGVFLVSIHFPPDYPFKPPKVSFKTKVYHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 118

HSP 2 Score: 63.5438 bits (153), Expect = 4.755e-75
Identity = 27/31 (87.10%), Postives = 30/31 (96.77%), Query Frame = 1

Query:  505 PLVPEIAHMYKSDKAKYESTGRSWTQKYAMG 597
            PLVPEIAHMYK+D++KYEST RSWTQKYAMG
Sbjct:  118 PLVPEIAHMYKTDRSKYESTARSWTQKYAMG 148

[Close]

BLAST of BQ624275 vs. ExPASy Swiss-Prot
Match: UBC30_ARATH (Ubiquitin carrier protein E2 30 OS=Arabidopsis thaliana GN=UBC30 PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 8.071e-72
Identity = 106/118 (89.83%), Postives = 113/118 (95.76%), Query Frame = 3

Query:  153 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 506
            MASKRI KEL+DLQ+DPP SCSAGP  +DMF WQATIMGP+DSP+AGGVFLVTIHFPPDYPFKPPKVAFRTKV+HPNINSNGSICLDILKEQWSPALT+SKVLLSICSLLTDPNPDDP
Sbjct:    1 MASKRINKELRDLQRDPPVSCSAGPTGDDMFQWQATIMGPADSPFAGGVFLVTIHFPPDYPFKPPKVAFRTKVYHPNINSNGSICLDILKEQWSPALTVSKVLLSICSLLTDPNPDDP 118

HSP 2 Score: 60.077 bits (144), Expect = 8.071e-72
Identity = 25/31 (80.65%), Postives = 29/31 (93.55%), Query Frame = 1

Query:  505 PLVPEIAHMYKSDKAKYESTGRSWTQKYAMG 597
            PLVPEIAH+YK+D+ KYEST +SWTQKYAMG
Sbjct:  118 PLVPEIAHIYKTDRVKYESTAQSWTQKYAMG 148

[Close]

BLAST of BQ624275 vs. ExPASy Swiss-Prot
Match: UBC29_ARATH (Ubiquitin carrier protein E2 29 OS=Arabidopsis thaliana GN=UBC29 PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 3.323e-70
Identity = 104/118 (88.14%), Postives = 113/118 (95.76%), Query Frame = 3

Query:  153 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 506
            MA++RILKELK+LQ+DPP SCSAGP  EDMFHWQATIMGP++SPY+GGVFLV IHFPPDYPFKPPKV FRTKVFHPNINSNG+ICLDILK+QWSPALTISKVLLSICSLLTDPNPDDP
Sbjct:    1 MATRRILKELKELQRDPPVSCSAGPTGEDMFHWQATIMGPNESPYSGGVFLVNIHFPPDYPFKPPKVVFRTKVFHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDPNPDDP 118

HSP 2 Score: 55.8398 bits (133), Expect = 3.323e-70
Identity = 23/30 (76.67%), Postives = 27/30 (90.00%), Query Frame = 1

Query:  505 PLVPEIAHMYKSDKAKYESTGRSWTQKYAM 594
            PLVPEIAH+YK+DK KYE+  RSWTQKYA+
Sbjct:  118 PLVPEIAHIYKTDKTKYEAMARSWTQKYAL 147

[Close]

BLAST of BQ624275 vs. ExPASy Swiss-Prot
Match: UBC1_MAGGR (Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnaporthe grisea GN=UBC1 PE=3 SV=2)

HSP 1 Score: 216.853 bits (551), Expect = 8.727e-65
Identity = 98/118 (83.05%), Postives = 108/118 (91.53%), Query Frame = 3

Query:  153 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 506
            MA KRI KEL DL +DPP+SCSAGPV ED+FHWQATIMGPSDSPYAGGVF + IHFP DYPFKPPKV F T+++HPNINSNGSICLDIL++QWSPALTISKVLLSICS+LTDPNPDDP
Sbjct:    1 MALKRINKELTDLGRDPPSSCSAGPVGEDLFHWQATIMGPSDSPYAGGVFFLAIHFPTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDDP 118

HSP 2 Score: 51.6026 bits (122), Expect = 8.727e-65
Identity = 21/30 (70.00%), Postives = 27/30 (90.00%), Query Frame = 1

Query:  505 PLVPEIAHMYKSDKAKYESTGRSWTQKYAM 594
            PLVPEIAH+YK+ +A+YEST R WT+KYA+
Sbjct:  118 PLVPEIAHVYKTARAQYESTAREWTRKYAI 147

[Close]

BLAST of BQ624275 vs. ExPASy Swiss-Prot
Match: UB2D4_HUMAN (Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens GN=UBE2D4 PE=1 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 2.523e-64
Identity = 97/118 (82.20%), Postives = 106/118 (89.83%), Query Frame = 3

Query:  153 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDP 506
            MA KRI KEL DLQ+DPP  CSAGPV +D+FHWQATIMGP+DSPY GGVF +TIHFP DYPFKPPKVAF TK++HPNINSNGSICLDIL+ QWSPALT+SKVLLSICSLL DPNPDDP
Sbjct:    1 MALKRIQKELTDLQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDP 118

HSP 2 Score: 50.447 bits (119), Expect = 2.523e-64
Identity = 21/30 (70.00%), Postives = 23/30 (76.67%), Query Frame = 1

Query:  505 PLVPEIAHMYKSDKAKYESTGRSWTQKYAM 594
            PLVPEIAH YK+D+ KY    R WTQKYAM
Sbjct:  118 PLVPEIAHTYKADREKYNRLAREWTQKYAM 147

The following BLAST results are available for this feature:

BLAST of BQ624275 vs. ExPASy Swiss-Prot

BLAST of BQ624275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266


Match Name	E-value	Identity	Description
UBC28_ARATH	2.798e-78	98.31	Ubiquitin carrier protein E2 28 OS=Arabidopsis tha...	[more]
UBC10_ARATH	6.208e-78	99.15	Ubiquitin-conjugating enzyme E2 10 OS=Arabidopsis ...	[more]
UBC9_ARATH	1.056e-77	99.15	SUMO-conjugating enzyme UBC9 OS=Arabidopsis thalia...	[more]
UBC4_SOLLC	1.377e-77	98.31	Ubiquitin-conjugating enzyme E2-17 kDa OS=Solanum ...	[more]
UBC8_ARATH	6.781e-77	97.46	Ubiquitin-conjugating enzyme E2 8 OS=Arabidopsis t...	[more]
UBC11_ARATH	4.755e-75	93.22	Ubiquitin-conjugating enzyme E2 11 OS=Arabidopsis ...	[more]
UBC30_ARATH	8.071e-72	89.83	Ubiquitin carrier protein E2 30 OS=Arabidopsis tha...	[more]
UBC29_ARATH	3.323e-70	88.14	Ubiquitin carrier protein E2 29 OS=Arabidopsis tha...	[more]
UBC1_MAGGR	8.727e-65	83.05	Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnapor...	[more]
UB2D4_HUMAN	2.523e-64	82.20	Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens...	[more]

Pages

Properties


Property Name	Value
Genbank description	USDA-FP_01366 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01366 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BQ624275 ID=BQ624275; Name=BQ624275; organism=Citrus sinensis; type=EST; length=606bp
GTTGATAGAGGAGCGAGGCGGGGGCGGCTTGACGACCTAGATCTGCTTCA
CCGTTTCGCTTTCTCGACGCTATCGCTCTCCGATCCTGTTCTCTGCCGCG
CAAGGTCTTAAGGTTCGTTGTAGTTTCAATTTTAATAATCCCCTGAAGAG
TCATGGCTTCAAAGCGTATTTTGAAGGAACTCAAGGATTTGCAGAAGGAT
CCTCCCACGTCTTGCAGCGCTGGCCCTGTGGCTGAAGACATGTTCCACTG
GCAAGCAACAATTATGGGCCCTTCTGATAGCCCATATGCAGGAGGTGTAT
TTTTAGTTACCATTCATTTTCCTCCTGATTATCCTTTCAAGCCCCCAAAG
GTTGCTTTTAGGACCAAGGTCTTCCACCCGAACATCAACAGCAATGGAAG
CATCTGTCTTGATATCCTTAAAGAACAGTGGAGTCCAGCGCTTACCATTT
CAAAGGTCCTGCTCTCTATCTGCTCCTTGCTTACTGATCCAAATCCTGAC
GACCCCTCTTGTACCGGAGATTGCCCACATGTACAAGTCCGACAAGGCCA
AATATGAATCCACGGGCAGGAGCTGGACACAGAAGTATGCCATGGGATGA
AGGTTG