BQ624284

Overview
NameBQ624284
Unique NameBQ624284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length444
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ624284 vs. ExPASy Swiss-Prot
Match: G3PA_TOBAC (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Nicotiana tabacum GN=GAPA PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 7.145e-36
Identity = 65/85 (76.47%), Postives = 65/85 (76.47%), Query Frame = 2
Query:    2 GDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTST 256
            GDIPTYVVGVNAD Y PDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ                  NIVPTST
Sbjct:  183 GDIPTYVVGVNADLYNPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTST 267          

HSP 2 Score: 40.4318 bits (93), Expect = 7.145e-36
Identity = 25/55 (45.45%), Postives = 28/55 (50.91%), Query Frame = 3
Query:  279 LSSQHSKAN*TALPFRVPTPNXXXXXXXXXXSKKTFRRRGETPLSEKSADNELKG 443
            LSSQ  + +  ALP RVPTPN          SKKTF         E +AD ELKG
Sbjct:  275 LSSQALRGSSMALPLRVPTPNVSVVDLVVQVSKKTFAEEVNAAFRE-AADKELKG 328          
BLAST of BQ624284 vs. ExPASy Swiss-Prot
Match: G3PA_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Zea mays GN=GAPA PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 3.375e-31
Identity = 70/107 (65.42%), Postives = 70/107 (65.42%), Query Frame = 2
Query:    2 GDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIAL 322
            GDIPTYVVGVNAD Y PDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ                  NIVPTST                 NGIAL
Sbjct:  194 GDIPTYVVGVNADQYNPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPNLKGKLNGIAL 300          
BLAST of BQ624284 vs. ExPASy Swiss-Prot
Match: G3PA_ARATH (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Arabidopsis thaliana GN=GAPA PE=1 SV=3)

HSP 1 Score: 132.88 bits (333), Expect = 5.757e-31
Identity = 77/139 (55.40%), Postives = 81/139 (58.27%), Query Frame = 2
Query:    2 GDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALSCANTKRLGC*SCRSGVEENLSQKR*NAAFRE 418
            GDIPTYVVGVNADAY  DEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ                  NIVPTST                 NGIAL    T  +        V +    +  NAAFR+
Sbjct:  187 GDIPTYVVGVNADAYSHDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALR-VPTPNVSVVDLVVQVSKKTFAEEVNAAFRD 324          
BLAST of BQ624284 vs. ExPASy Swiss-Prot
Match: G3PA_PEA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Pisum sativum GN=GAPA PE=2 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 2.048e-28
Identity = 67/107 (62.62%), Postives = 68/107 (63.55%), Query Frame = 2
Query:    2 GDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIAL 322
            GDIPTYVVGVNADAY   + IISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ                  NIVPTST                 NGIAL
Sbjct:  196 GDIPTYVVGVNADAYTHADDIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPTLKGKLNGIAL 302          
BLAST of BQ624284 vs. ExPASy Swiss-Prot
Match: G3PA_SINAL (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Sinapis alba GN=GAPA PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 3.493e-28
Identity = 72/139 (51.80%), Postives = 79/139 (56.83%), Query Frame = 2
Query:    2 GDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALSCANTKRLGC*SCRSGVEENLSQKR*NAAFRE 418
            GDIPTYVVGVNA+ Y  ++ IISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ                  NIVPTST                 NGIAL    T  +        V +    +  NAAFR+
Sbjct:   24 GDIPTYVVGVNAELYSHEDTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVALVLPNLKGKLNGIALR-VPTPNVSVVDLVVQVSKKTFAEEVNAAFRD 161          
BLAST of BQ624284 vs. ExPASy Swiss-Prot
Match: G3PA_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Spinacia oleracea GN=GAPA PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 1.733e-27
Identity = 72/139 (51.80%), Postives = 77/139 (55.40%), Query Frame = 2
Query:    2 GDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALSCANTKRLGC*SCRSGVEENLSQKR*NAAFRE 418
            GDIPTYVVGVN + Y   + IISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ                  NIVPTST                 NGIAL    T  +        V +    +  NAAFRE
Sbjct:  192 GDIPTYVVGVNEEGYTHADTIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQRLLDASHRDLRRARAACLNIVPTSTGAAKAVALVLPNLKGKLNGIALR-VPTPNVSVVDLVVQVSKKTFAEEVNAAFRE 329          
BLAST of BQ624284 vs. ExPASy Swiss-Prot
Match: G3PA_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Chlamydomonas reinhardtii GN=GAPA PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 6.587e-27
Identity = 70/138 (50.72%), Postives = 78/138 (56.52%), Query Frame = 2
Query:    5 DIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALSCANTKRLGC*SCRSGVEENLSQKR*NAAFRE 418
            DIPT+VVGVN   YK + PIISNASCTTNCLAPFVKVL+QKFGI+KGTMTTTHSYTGDQ                  NIVPT+T                 NGIAL    T  +        VE+    +  NAAFRE
Sbjct:  165 DIPTFVVGVNEGDYKHEYPIISNASCTTNCLAPFVKVLEQKFGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTTTGAAKAVSLVLPSLKGKLNGIALR-VPTPTVSVVDLVVQVEKKTFAEEVNAAFRE 301          
BLAST of BQ624284 vs. ExPASy Swiss-Prot
Match: G3PA_SCEVA (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic (Fragment) OS=Scenedesmus vacuolatus GN=GapA PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 7.283e-26
Identity = 68/138 (49.28%), Postives = 76/138 (55.07%), Query Frame = 2
Query:    5 DIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALSCANTKRLGC*SCRSGVEENLSQKR*NAAFRE 418
            DIPTYVVGVNA  YK  + IISNASCTTNCLAPFVKVLD+KFGI+KGTMT THSYTGDQ                  NIVPT+T                 NGIAL    T  +        VE+    +  N AF+E
Sbjct:  123 DIPTYVVGVNAHDYKHSDAIISNASCTTNCLAPFVKVLDEKFGIVKGTMTNTHSYTGDQRLLDASHRDLRRARAAALNIVPTTTGAAKAVALVLPKLKGKLNGIALR-VPTPNVSVVDLVVQVEKKTFAEEINNAFKE 259          
BLAST of BQ624284 vs. ExPASy Swiss-Prot
Match: G3PB_PEA (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Pisum sativum GN=GAPB PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 3.383e-23
Identity = 64/139 (46.04%), Postives = 75/139 (53.96%), Query Frame = 2
Query:    5 DIPTYVVGVNADAYKPD-EPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALSCANTKRLGC*SCRSGVEENLSQKR*NAAFRE 418
            DIPTYV+GVN   Y  +   IISNASCTTNCLAPF KVLD++FGI+KGTMTTTHSYTGDQ                  NIVPTST                 NGIAL              +  ++ +S +  NAAFR+
Sbjct:  213 DIPTYVIGVNEQDYGHEVADIISNASCTTNCLAPFAKVLDEEFGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIALRVPTPNVSVVDLVVNVAKKGISAEDVNAAFRK 351          
BLAST of BQ624284 vs. ExPASy Swiss-Prot
Match: G3PB_SPIOL (Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic OS=Spinacia oleracea GN=GAPB PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.770e-23
Identity = 60/107 (56.07%), Postives = 63/107 (58.88%), Query Frame = 2
Query:    5 DIPTYVVGVNADAYKPDEP-IISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIAL 322
            DIPTYVVGVN   Y  D   IISNASCTTNCLAPFVKVLD++ GI+KGTMTTTHSYTGDQ                  NIVPTST                 NGIAL
Sbjct:  212 DIPTYVVGVNEKDYGHDVANIISNASCTTNCLAPFVKVLDEELGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAVSLVLPQLKGKLNGIAL 318          
The following BLAST results are available for this feature:
BLAST of BQ624284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 302
Match NameE-valueIdentityDescription
G3PA_TOBAC7.145e-3676.47Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_MAIZE3.375e-3165.42Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_ARATH5.757e-3155.40Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_PEA2.048e-2862.62Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_SINAL3.493e-2851.80Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_SPIOL1.733e-2751.80Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_CHLRE6.587e-2750.72Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PA_SCEVA7.283e-2649.28Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3PB_PEA3.383e-2346.04Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]
G3PB_SPIOL5.770e-2356.07Glyceraldehyde-3-phosphate dehydrogenase B, chloro... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_01375 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01375 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ624284 ID=BQ624284; Name=BQ624284; organism=Citrus sinensis; type=EST; length=444bp
GGGTGACATCCCAACCTACGTTGTTGGTGTCAATGCGGATGCTTACAAGC
CAGATGAGCCCATCATCAGCAATGCTTCTTGCACAACCAACTGCCTTGCC
CCATTCGTCAAGGTTCTTGACCAGAAGTTTGGCATTATCAAGGGAACCAT
GACCACCACACACTCGTACACTGGCGACCAAAGGCTACTCGATGCTAGCC
ACCGTGACCTCAGGCGTGCAAGAGCAGCTGCACTCAACATTGTCCCAACA
TCAACTGGTGCGGCAAAAGCTGTGGCCCTTGTCCTCCCAGCACTCAAAGG
CAAACTAAACGGCATTGCCCTTTCGTGTGCCAACACCAAACGTCTCGGTT
GTTGATCTTGTCGTTCAGGTGTCGAAGAAAACCTTTCGCAGAAGAGGTGA
AACGCCGCTTTCAGAGAAAAGCGCTGACAATGAACTGAAAGGGG
back to top