BQ624285

Overview
NameBQ624285
Unique NameBQ624285
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ624285 vs. ExPASy Swiss-Prot
Match: FER1_MESCR (Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 4.053e-37
Identity = 71/101 (70.30%), Postives = 82/101 (81.19%), Query Frame = 2
Query:   23 RVIAMATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 325
            RV AMA YKV L+TPEG+QE+ECPDD YILDAAE+AGIDLPYSCRAGSCS+CAGK            FL+DDQI  G+VLTCVAYPT DVT+ETHK+EE++
Sbjct:   47 RVTAMAAYKVTLVTPEGKQELECPDDVYILDAAEEAGIDLPYSCRAGSCSSCAGKVTSGSVNQDDGSFLDDDQIKEGWVLTCVAYPTGDVTIETHKEEELT 147          
BLAST of BQ624285 vs. ExPASy Swiss-Prot
Match: FER2_ARATH (Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana GN=FD2 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 5.852e-36
Identity = 70/105 (66.67%), Postives = 81/105 (77.14%), Query Frame = 2
Query:    8 TTEVDRVIAMATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 322
            T    RV AMATYKVK ITPEGE E+EC DD Y+LDAAE+AGIDLPYSCRAGSCS+CAGK            FL+D+QI  G+VLTC AYPTSDVT+ETHK+E++
Sbjct:   43 TARGGRVTAMATYKVKFITPEGELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQIGEGFVLTCAAYPTSDVTIETHKEEDI 147          
BLAST of BQ624285 vs. ExPASy Swiss-Prot
Match: FER1_ARATH (Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana GN=FD1 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 5.852e-36
Identity = 69/104 (66.35%), Postives = 81/104 (77.88%), Query Frame = 2
Query:    5 TTTEVDRVIAMATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDE 316
            +T    RV AMATYKVK ITPEGEQE+EC +D Y+LDAAE+AG+DLPYSCRAGSCS+CAGK            FL+D+Q+  GYVLTCVAYPTSDV +ETHK+E
Sbjct:   42 STARGGRVTAMATYKVKFITPEGEQEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLTCVAYPTSDVVIETHKEE 145          
BLAST of BQ624285 vs. ExPASy Swiss-Prot
Match: FER_SYNY4 (Ferredoxin OS=Synechocystis sp. (strain PCC 6714) PE=1 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 1.304e-35
Identity = 68/96 (70.83%), Postives = 79/96 (82.29%), Query Frame = 2
Query:   35 MATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 322
            MA+Y VKLITP+GE  IEC DDTYILDAAE+AG+DLPYSCRAG+CSTCAGK            FL+DDQI+AGYVLTCVAYPTSD T+ETHK+E++
Sbjct:    1 MASYTVKLITPDGENSIECSDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITAGSVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDL 96          
BLAST of BQ624285 vs. ExPASy Swiss-Prot
Match: FER_SYNY3 (Ferredoxin-1 OS=Synechocystis sp. (strain PCC 6803) GN=petF PE=1 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 1.304e-35
Identity = 68/96 (70.83%), Postives = 79/96 (82.29%), Query Frame = 2
Query:   35 MATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 322
            MA+Y VKLITP+GE  IEC DDTYILDAAE+AG+DLPYSCRAG+CSTCAGK            FL+DDQI+AGYVLTCVAYPTSD T+ETHK+E++
Sbjct:    1 MASYTVKLITPDGESSIECSDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITAGSVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEDL 96          
BLAST of BQ624285 vs. ExPASy Swiss-Prot
Match: FER_BRANA (Ferredoxin OS=Brassica napus PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 1.703e-35
Identity = 68/95 (71.58%), Postives = 77/95 (81.05%), Query Frame = 2
Query:   38 ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 322
            ATYKVK ITPEGEQE+EC DD Y+LDAAE+AGIDLPYSCRAGSCS+CAGK            FL+DDQI  G+VLTC AYPTSDVT+ETHK+EE+
Sbjct:    1 ATYKVKFITPEGEQEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGFVDQSDESFLDDDQIAEGFVLTCAAYPTSDVTIETHKEEEL 95          
BLAST of BQ624285 vs. ExPASy Swiss-Prot
Match: FER1_PEA (Ferredoxin-1, chloroplastic OS=Pisum sativum GN=PETF PE=1 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 2.905e-35
Identity = 66/102 (64.71%), Postives = 81/102 (79.41%), Query Frame = 2
Query:   20 DRVIAMATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 325
            D  +AMA+YKVKL+TP+G QE ECP D YILD AE+ GIDLPYSCRAGSCS+CAGK            FL+D+QI+AG+VLTCVAYPTSDV +ETHK+E+++
Sbjct:   47 DLAVAMASYKVKLVTPDGTQEFECPSDVYILDHAEEVGIDLPYSCRAGSCSSCAGKVVGGEVDQSDGSFLDDEQIEAGFVLTCVAYPTSDVVIETHKEEDLT 148          
BLAST of BQ624285 vs. ExPASy Swiss-Prot
Match: FER3_RAPSA (Ferredoxin, leaf L-A OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 3.793e-35
Identity = 67/95 (70.53%), Postives = 77/95 (81.05%), Query Frame = 2
Query:   38 ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 322
            ATYKVK ITPEGEQE+EC DD Y+LDAAE+AGIDLPYSCRAGSCS+CAGK            FL+DDQI  G+VLTC AYPTSDVT+ETH++E+M
Sbjct:    1 ATYKVKFITPEGEQEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDDQIAEGFVLTCAAYPTSDVTIETHREEDM 95          
BLAST of BQ624285 vs. ExPASy Swiss-Prot
Match: FER1_PHYES (Ferredoxin-1 OS=Phytolacca esculenta PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.211e-34
Identity = 64/96 (66.67%), Postives = 78/96 (81.25%), Query Frame = 2
Query:   38 ATYKVKLITPEGEQEIECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEMS 325
            ATYKV L+TP G Q I+CPDDTY+LDAAE+AG+DLPYSCRAGSCS+CAGK            FL+DDQI+AG+VLTCVAYP  DVT+ETHK+E+++
Sbjct:    1 ATYKVTLVTPSGTQTIDCPDDTYVLDAAEEAGLDLPYSCRAGSCSSCAGKVTAGTVDQEDQSFLDDDQIEAGFVLTCVAYPKGDVTIETHKEEDIA 96          
BLAST of BQ624285 vs. ExPASy Swiss-Prot
Match: FER1_APHFL (Ferredoxin-1 OS=Aphanizomenon flos-aquae PE=1 SV=2)

HSP 1 Score: 142.124 bits (357), Expect = 1.594e-33
Identity = 67/97 (69.07%), Postives = 78/97 (80.41%), Query Frame = 2
Query:   35 MATYKVKLITPEGEQE-IECPDDTYILDAAEDAGIDLPYSCRAGSCSTCAGKXXXXXXXXXXXXFLEDDQIDAGYVLTCVAYPTSDVTVETHKDEEM 322
            MATYKV LI  EG    I+CPDDTYILDAAE+AG+DLPYSCRAG+CSTCAGK            FL+DDQ++AGYVLTCVAYPTSDVT+ETHK+E++
Sbjct:    1 MATYKVTLIDAEGTTTTIDCPDDTYILDAAEEAGLDLPYSCRAGACSTCAGKLVTGTIDQSDQSFLDDDQVEAGYVLTCVAYPTSDVTIETHKEEDL 97          
The following BLAST results are available for this feature:
BLAST of BQ624285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
FER1_MESCR4.053e-3770.30Ferredoxin-1, chloroplastic OS=Mesembryanthemum cr... [more]
FER2_ARATH5.852e-3666.67Ferredoxin-2, chloroplastic OS=Arabidopsis thalian... [more]
FER1_ARATH5.852e-3666.35Ferredoxin-1, chloroplastic OS=Arabidopsis thalian... [more]
FER_SYNY41.304e-3570.83Ferredoxin OS=Synechocystis sp. (strain PCC 6714) ... [more]
FER_SYNY31.304e-3570.83Ferredoxin-1 OS=Synechocystis sp. (strain PCC 6803... [more]
FER_BRANA1.703e-3571.58Ferredoxin OS=Brassica napus PE=1 SV=1[more]
FER1_PEA2.905e-3564.71Ferredoxin-1, chloroplastic OS=Pisum sativum GN=PE... [more]
FER3_RAPSA3.793e-3570.53Ferredoxin, leaf L-A OS=Raphanus sativus PE=1 SV=1[more]
FER1_PHYES3.211e-3466.67Ferredoxin-1 OS=Phytolacca esculenta PE=1 SV=1[more]
FER1_APHFL1.594e-3369.07Ferredoxin-1 OS=Aphanizomenon flos-aquae PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_01376 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01376 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ624285 ID=BQ624285; Name=BQ624285; organism=Citrus sinensis; type=EST; length=543bp
GCCAACAACAACAGAGGTGGACCGTGTAATAGCCATGGCTACATACAAAG
TCAAGCTCATTACACCCGAGGGAGAGCAAGAAATTGAGTGTCCTGATGAC
ACATATATTCTTGATGCAGCTGAAGATGCTGGAATTGATCTCCCATATTC
ATGCAGGGCTGGTTCTTGCTCTACTTGTGCTGGGAAAGTTGTCTCTGGTA
GTGTTGACCAGTCAGATGGAAGCTTTCTTGAGGATGATCAAATAGATGCA
GGTTATGTTCTCACTTGTGTTGCTTATCCTACAAGTGATGTTACTGTTGA
GACACACAAGGATGAAGAAATGTCTTAATTATGCGGCGCTTTAATATAAC
ATGGAGAATTTTGATATTATTATTATTAATATTGTGTATGGGTTGGTAAT
TTAGTGCCTTGTAAGGGGAATGTTGAAATATTGACGTGCTTTCTTGAATG
AGTAATATGAAAAGGGGGATTTTGCTCTGTACTTCCATTTGCTGGACCAA
ATGAAGTTGTTGGAGCTTTGCCATTATGAAGATTGGATTCTTG
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