BQ624287

Overview
NameBQ624287
Unique NameBQ624287
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length474
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ624287 vs. ExPASy Swiss-Prot
Match: CML16_ARATH (Probable calcium-binding protein CML16 OS=Arabidopsis thaliana GN=CML16 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 1.604e-43
Identity = 87/109 (79.82%), Postives = 97/109 (88.99%), Query Frame = 3
Query:    6 DQLHILLADMDSNRNGLVEFDELVALILPDISEQVLVNQEQLMEVFRSFDRDGNGQITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATIMAQSAADF 332
            DQ+ +LL  +D N NG VEFDELV  ILPDI+E+VL+NQEQLMEVFRSFDRDGNG ITAAELAGSMAKMGHPLTY EL+EMM EAD+NGDGVISFNEF+ IMA+SAADF
Sbjct:   47 DQISLLLNQIDRNGNGSVEFDELVVAILPDINEEVLINQEQLMEVFRSFDRDGNGSITAAELAGSMAKMGHPLTYRELTEMMTEADSNGDGVISFNEFSHIMAKSAADF 155          
BLAST of BQ624287 vs. ExPASy Swiss-Prot
Match: CML15_ARATH (Probable calcium-binding protein CML15 OS=Arabidopsis thaliana GN=CML15 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 3.574e-43
Identity = 82/110 (74.55%), Postives = 99/110 (90.00%), Query Frame = 3
Query:    3 GDQLHILLADMDSNRNGLVEFDELVALILPDISEQVLVNQEQLMEVFRSFDRDGNGQITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATIMAQSAADF 332
            GDQ+H+LLA MDSN NG VEFDELV  ILPD++E+VL+N EQL+E+F+SFDRDGNG I+AAELAG+MAKMG PLTY EL+EM++EADTNGDGVISF EFA+IMA+SA D+
Sbjct:   41 GDQIHVLLASMDSNGNGFVEFDELVGTILPDLNEEVLINSEQLLEIFKSFDRDGNGFISAAELAGAMAKMGQPLTYKELTEMIKEADTNGDGVISFGEFASIMAKSAVDY 150          
BLAST of BQ624287 vs. ExPASy Swiss-Prot
Match: CML14_ORYSJ (Probable calcium-binding protein CML14 OS=Oryza sativa subsp. japonica GN=CML14 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 7.981e-35
Identity = 74/111 (66.67%), Postives = 91/111 (81.98%), Query Frame = 3
Query:    3 GDQLHILLADMDSNRNGLVEFDELVALILPDISEQV-LVNQEQLMEVFRSFDRDGNGQITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATIMAQSAADF 332
            GD++H LLA MD+N NG VEFDEL A I P ++ Q  LV+Q QL+EVFR+FDRDGNG I+AAELA SMA++G PLT+ EL+ MMR+ADT+GDGVISF EFA +MA+SA DF
Sbjct:   59 GDEVHALLAGMDANGNGSVEFDELAAAIAPVLTTQTHLVDQAQLLEVFRAFDRDGNGFISAAELARSMARLGQPLTFEELTRMMRDADTDGDGVISFKEFAAVMAKSALDF 169          
BLAST of BQ624287 vs. ExPASy Swiss-Prot
Match: CML12_ORYSJ (Probable calcium-binding protein CML12 OS=Oryza sativa subsp. japonica GN=CML12 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 8.259e-32
Identity = 69/114 (60.53%), Postives = 87/114 (76.32%), Query Frame = 3
Query:    3 GDQLHILLADMDSNRNGLVEFDELVA----LILPDISEQVLVNQEQLMEVFRSFDRDGNGQITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATIMAQSAADF 332
            GD++H L+A +D++ NG VEFDEL +    LIL      V V+Q +L E FR+FDRDGNG I+AAELA SMA+MGHP+ Y EL++MMREADT+GDG+ISF EF  IMA+SA DF
Sbjct:  130 GDEIHALIAAIDADGNGTVEFDELASSLADLILGPCRPSVAVDQAELAEAFRAFDRDGNGFISAAELARSMARMGHPICYAELTDMMREADTDGDGLISFEEFTAIMAKSALDF 243          
BLAST of BQ624287 vs. ExPASy Swiss-Prot
Match: CML18_ARATH (Probable calcium-binding protein CML18 OS=Arabidopsis thaliana GN=CML18 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.179e-24
Identity = 59/108 (54.63%), Postives = 73/108 (67.59%), Query Frame = 3
Query:    6 DQLHILLADMDSNRNGLVEFDELVALILPDISEQVLVNQEQLMEVFRSFDRDGNGQITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATIMAQSAAD 329
            DQL  L+   D N NGLVEF E VAL+ PD+ +    + +QL  +FR FDRDGNG ITAAELA SMAK+GH LT  EL+ M++EAD +GDG I F EF   +  +A D
Sbjct:   55 DQLDTLIQKADRNNNGLVEFSEFVALVEPDLVKCPYTD-DQLKAIFRMFDRDGNGYITAAELAHSMAKLGHALTAEELTGMIKEADRDGDGCIDFQEFVQAITSAAFD 161          
BLAST of BQ624287 vs. ExPASy Swiss-Prot
Match: CML11_ORYSJ (Probable calcium-binding protein CML11 OS=Oryza sativa subsp. japonica GN=CML11 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 4.853e-24
Identity = 56/109 (51.38%), Postives = 78/109 (71.56%), Query Frame = 3
Query:    6 DQLHILLADMDSNRNGLVEFDELVALILPDIS-EQVLVNQEQLMEVFRSFDRDGNGQITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATIMAQSAAD 329
            D+L  L+   D+N NGL+EF E VAL+ P++  ++   +++Q+  +F  FDRDGNG ITAAELA SMAK+GH LT  EL+ M++EADT+GDG ISF EF+  +  +A D
Sbjct:   99 DELDSLIQRADTNSNGLIEFSEFVALVAPELLYDRAPYSEDQIRRLFNIFDRDGNGFITAAELAHSMAKLGHALTVKELTGMIKEADTDGDGRISFQEFSRAITAAAFD 207          
BLAST of BQ624287 vs. ExPASy Swiss-Prot
Match: CML17_ARATH (Probable calcium-binding protein CML17 OS=Arabidopsis thaliana GN=CML17 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.109e-23
Identity = 57/112 (50.89%), Postives = 74/112 (66.07%), Query Frame = 3
Query:    6 DQLHILLADMDSNRNGLVEFDELVALILPDI----SEQVLVNQEQLMEVFRSFDRDGNGQITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATIMAQSAAD 329
            DQ   L+   D+  NGLVEF E VAL+ P++           +EQL+ +FR FD DGNG ITAAELA SMAK+GH LT  EL+ M++EAD++GDG I+F EFA  +  +A D
Sbjct:   51 DQFETLIDKADTKSNGLVEFPEFVALVSPELLSPAKRTTPYTEEQLLRLFRIFDTDGNGFITAAELAHSMAKLGHALTVAELTGMIKEADSDGDGRINFQEFAKAINSAAFD 162          
BLAST of BQ624287 vs. ExPASy Swiss-Prot
Match: CALM_PARTE (Calmodulin OS=Paramecium tetraurelia GN=CAM PE=1 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 5.746e-17
Identity = 43/101 (42.57%), Postives = 69/101 (68.32%), Query Frame = 3
Query:    9 QLHILLADMDSNRNGLVEFDELVALILPDISEQVLVNQEQLMEVFRSFDRDGNGQITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATIM 311
            +L  ++ ++D++ NG ++F E ++L+   + EQ   ++E+L+E F+ FDRDGNG I+AAEL   M  +G  LT  E+ EM+READ +GDG I++ EF  +M
Sbjct:   48 ELQDMINEVDADGNGTIDFPEFLSLMARKMKEQD--SEEELIEAFKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINYEEFVRMM 146          
BLAST of BQ624287 vs. ExPASy Swiss-Prot
Match: CALM_HETTR (Calmodulin OS=Heterocapsa triquetra PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 3.725e-16
Identity = 42/101 (41.58%), Postives = 67/101 (66.34%), Query Frame = 3
Query:    9 QLHILLADMDSNRNGLVEFDELVALILPDISEQVLVNQEQLMEVFRSFDRDGNGQITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATIM 311
            +L  ++ ++DS+ NG ++F E ++L+   + +     +E+L+E F+ FDRDGNG I+AAEL   M  +G  LT  E+ EM+READ +GDG I++ EF  +M
Sbjct:   48 ELQDMINEVDSDGNGTIDFPEFLSLMARKMKDTD--TEEELIEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFVKMM 146          
BLAST of BQ624287 vs. ExPASy Swiss-Prot
Match: CALM_CHLRE (Calmodulin OS=Chlamydomonas reinhardtii PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 3.725e-16
Identity = 40/107 (37.38%), Postives = 69/107 (64.49%), Query Frame = 3
Query:    9 QLHILLADMDSNRNGLVEFDELVALILPDISEQVLVNQEQLMEVFRSFDRDGNGQITAAELAGSMAKMGHPLTYGELSEMMREADTNGDGVISFNEFATIMAQSAAD 329
            +L  +++++D++ NG ++F E + L+   + E    ++++L E F+ FD+DGNG I+AAEL   M  +G  L+  E+ EM+READ +GDG +++ EF  +M   A D
Sbjct:   51 ELQDMISEVDADGNGTIDFPEFLMLMARKMKETD--HEDELREAFKVFDKDGNGFISAAELRHVMTNLGEKLSEEEVDEMIREADVDGDGQVNYEEFVRMMTSGATD 155          
The following BLAST results are available for this feature:
BLAST of BQ624287 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
CML16_ARATH1.604e-4379.82Probable calcium-binding protein CML16 OS=Arabidop... [more]
CML15_ARATH3.574e-4374.55Probable calcium-binding protein CML15 OS=Arabidop... [more]
CML14_ORYSJ7.981e-3566.67Probable calcium-binding protein CML14 OS=Oryza sa... [more]
CML12_ORYSJ8.259e-3260.53Probable calcium-binding protein CML12 OS=Oryza sa... [more]
CML18_ARATH2.179e-2454.63Probable calcium-binding protein CML18 OS=Arabidop... [more]
CML11_ORYSJ4.853e-2451.38Probable calcium-binding protein CML11 OS=Oryza sa... [more]
CML17_ARATH4.109e-2350.89Probable calcium-binding protein CML17 OS=Arabidop... [more]
CALM_PARTE5.746e-1742.57Calmodulin OS=Paramecium tetraurelia GN=CAM PE=1 S... [more]
CALM_HETTR3.725e-1641.58Calmodulin OS=Heterocapsa triquetra PE=2 SV=1[more]
CALM_CHLRE3.725e-1637.38Calmodulin OS=Chlamydomonas reinhardtii PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_01378 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01378 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ624287 ID=BQ624287; Name=BQ624287; organism=Citrus sinensis; type=EST; length=474bp
CCGGCGACCAGCTGCACATTTTGTTGGCCGACATGGATTCCAACCGCAAC
GGCCTCGTCGAATTCGATGAATTGGTTGCTCTGATACTCCCCGACATCAG
CGAGCAAGTCTTGGTCAACCAAGAACAACTCATGGAGGTCTTTCGGTCCT
TCGATCGCGACGGCAACGGCCAAATCACTGCGGCCGAGCTCGCGGGCTCC
ATGGCCAAAATGGGCCACCCTTTGACGTACGGCGAGCTATCGGAGATGAT
GAGGGAGGCCGACACCAATGGCGACGGTGTCATTAGTTTTAATGAGTTCG
CTACCATTATGGCACAGTCTGCTGCCGACTTTCTCGGCCTTAAGCTTGCG
TAGGCTGCAGCAGGGTACGTTAAATAATTAAAAAAATACGGGGTTTTGAT
GTCGTCGATATGTAAATTAGTTAATTTGCATCACAAGAACTACGTATAAT
TGTTATCAAGTTTGATGTGATGGA
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