BQ624296

Overview
NameBQ624296
Unique NameBQ624296
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ624296 vs. ExPASy Swiss-Prot
Match: MSRB_THEEB (Peptide methionine sulfoxide reductase msrB OS=Thermosynechococcus elongatus (strain BP-1) GN=msrB PE=3 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 2.163e-46
Identity = 84/125 (67.20%), Postives = 101/125 (80.80%), Query Frame = 3
Query:  135 SDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIG-SNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLKPK 506
            +D EW+ +LT EQYY+TR+KGTERAFTG YWN K PG Y C+CC TPLF S TK+DSGTGWPS++QP+  +N++ + DLS   M R EVLCAVCDAHLGHVF+DGPPPTG RYCINSA+L   P+
Sbjct:    7 TDAEWQAQLTPEQYYVTRKKGTERAFTGCYWNNKKPGLYSCVCCGTPLFRSETKYDSGTGWPSFWQPLDPNNIRMERDLS-HGMVRTEVLCAVCDAHLGHVFEDGPPPTGLRYCINSAALAFVPE 130          
BLAST of BQ624296 vs. ExPASy Swiss-Prot
Match: MSRB_ACAM1 (Peptide methionine sulfoxide reductase msrB OS=Acaryochloris marina (strain MBIC 11017) GN=msrB PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 9.404e-42
Identity = 78/125 (62.40%), Postives = 97/125 (77.60%), Query Frame = 3
Query:  135 SDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIG-SNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLKPK 506
            +++EW+ +LT EQ+ +TR  GTERAFTGEY + K  GTY C+CC T LF S TKFDSGTGWPS++ P   ++++ K D S+ FM R EVLCAVCDAHLGHVF+DGP PTG RYC+NSA+LK  PK
Sbjct:    7 TEQEWEAQLTPEQFRVTRHHGTERAFTGEYHDLKAAGTYQCVCCGTELFTSDTKFDSGTGWPSFWAPADKTHVEEKTDRSL-FMVRTEVLCAVCDAHLGHVFNDGPKPTGLRYCMNSAALKFVPK 130          
BLAST of BQ624296 vs. ExPASy Swiss-Prot
Match: MSRB_AZOVD (Peptide methionine sulfoxide reductase msrB OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=msrB PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.358e-40
Identity = 75/130 (57.69%), Postives = 93/130 (71.54%), Query Frame = 3
Query:  117 VDYASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLKPK 506
            +D    S + W+  L+ E++ I R  GTERAF+GEY+ T  PG YHC CCD PLF+S  K+D+G GWPSY+QP+ ++  +  D     M R EVLCA CDAHLGHVF DGPPPTG RYCINSASL+LKP+
Sbjct:    1 MDKLEKSLDVWRELLSDERFRICRLGGTERAFSGEYYATSVPGVYHCACCDAPLFDSDAKYDAGCGWPSYFQPVAASALTSRDDYSHGMHRIEVLCARCDAHLGHVFPDGPPPTGLRYCINSASLRLKPR 130          
BLAST of BQ624296 vs. ExPASy Swiss-Prot
Match: MSRB_HAHCH (Peptide methionine sulfoxide reductase msrB OS=Hahella chejuensis (strain KCTC 2396) GN=msrB PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 3.951e-40
Identity = 73/127 (57.48%), Postives = 96/127 (75.59%), Query Frame = 3
Query:  117 VDYASISDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIG-SNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLK 494
            +D    SD+EW+++LT EQY +TR KGTER FTGEY++TK  G Y C+CC  PLF S  K+DSG GWPS++ P+    +  ++D+S + M R E+LC+ CDAHLGHVFDDGP PTG+RYC+NSASL+
Sbjct:    1 MDKVKKSDQEWRQQLTDEQYRVTRGKGTERPFTGEYYDTKEAGVYVCVCCGEPLFTSENKYDSGCGWPSFWAPMDKEKITEEIDMSHM-MVRTEILCSKCDAHLGHVFDDGPQPTGQRYCVNSASLR 126          
BLAST of BQ624296 vs. ExPASy Swiss-Prot
Match: MSRB_ACIAD (Peptide methionine sulfoxide reductase msrB OS=Acinetobacter sp. (strain ADP1) GN=msrB PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 3.951e-40
Identity = 74/122 (60.66%), Postives = 91/122 (74.59%), Query Frame = 3
Query:  135 SDEEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLK 500
            ++ EW+R L+ E+Y ITRQKGTE AFTG+YWNTK  GTY C CC T LF S +K+DSG GWPS+Y+PI +    + D     M R E++C  CDAHLGHVF+DGP PTG RYC+NSASL+LK
Sbjct:    7 TEREWQRELSPEEYRITRQKGTEPAFTGQYWNTKQSGTYVCRCCGTELFSSISKYDSGCGWPSFYKPINTTAIEEHDDFSHGMVRTEIVCHHCDAHLGHVFEDGPQPTGLRYCVNSASLQLK 128          
BLAST of BQ624296 vs. ExPASy Swiss-Prot
Match: MSRB_PSEAE (Peptide methionine sulfoxide reductase msrB OS=Pseudomonas aeruginosa GN=msrB PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 6.740e-40
Identity = 75/122 (61.48%), Postives = 88/122 (72.13%), Query Frame = 3
Query:  141 EEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLKPK 506
            + W+  LT EQ++I R  GTERAF+GEY  TKTPG YHC CC T LF+S  K+DSG+GWPSY+QP+ +    +LD     M R EV C  CDAHLGHVF DGP PTG RYCINSASLKL P+
Sbjct:    9 DSWREELTEEQFHICRLGGTERAFSGEYHATKTPGIYHCTCCGTALFDSDAKYDSGSGWPSYFQPVDAEAVRELDDFSHGMHRIEVRCGRCDAHLGHVFPDGPRPTGLRYCINSASLKLVPR 130          
BLAST of BQ624296 vs. ExPASy Swiss-Prot
Match: MSRB_PSEAB (Peptide methionine sulfoxide reductase msrB OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=msrB PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 6.740e-40
Identity = 75/122 (61.48%), Postives = 88/122 (72.13%), Query Frame = 3
Query:  141 EEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLKPK 506
            + W+  LT EQ++I R  GTERAF+GEY  TKTPG YHC CC T LF+S  K+DSG+GWPSY+QP+ +    +LD     M R EV C  CDAHLGHVF DGP PTG RYCINSASLKL P+
Sbjct:    9 DSWREELTEEQFHICRLGGTERAFSGEYHATKTPGIYHCTCCGTALFDSDAKYDSGSGWPSYFQPVDAEAVRELDDFSHGMHRIEVRCGRCDAHLGHVFPDGPRPTGLRYCINSASLKLVPR 130          
BLAST of BQ624296 vs. ExPASy Swiss-Prot
Match: MSRB_PSEA8 (Peptide methionine sulfoxide reductase msrB OS=Pseudomonas aeruginosa (strain LESB58) GN=msrB PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 6.740e-40
Identity = 75/122 (61.48%), Postives = 88/122 (72.13%), Query Frame = 3
Query:  141 EEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLKPK 506
            + W+  LT EQ++I R  GTERAF+GEY  TKTPG YHC CC T LF+S  K+DSG+GWPSY+QP+ +    +LD     M R EV C  CDAHLGHVF DGP PTG RYCINSASLKL P+
Sbjct:    9 DSWREELTEEQFHICRLGGTERAFSGEYHATKTPGIYHCTCCGTALFDSDAKYDSGSGWPSYFQPVDAEAVRELDDFSHGMHRIEVRCGRCDAHLGHVFPDGPRPTGLRYCINSASLKLVPR 130          
BLAST of BQ624296 vs. ExPASy Swiss-Prot
Match: MSRB_PSEA7 (Peptide methionine sulfoxide reductase msrB OS=Pseudomonas aeruginosa (strain PA7) GN=msrB PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 6.740e-40
Identity = 75/122 (61.48%), Postives = 87/122 (71.31%), Query Frame = 3
Query:  141 EEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLKPK 506
            + W+  LT EQ++I R  GTERAF+GEY  TKTPG YHC CC T LF+S  K+DSG+GWPSY+QP+      +LD     M R EV C  CDAHLGHVF DGP PTG RYCINSASLKL P+
Sbjct:    9 DSWREELTEEQFHICRLGGTERAFSGEYHATKTPGVYHCTCCGTALFDSDAKYDSGSGWPSYFQPVDGEAVRELDDFSHGMHRIEVRCGRCDAHLGHVFPDGPRPTGLRYCINSASLKLVPR 130          
BLAST of BQ624296 vs. ExPASy Swiss-Prot
Match: MSRB_PSEPW (Peptide methionine sulfoxide reductase msrB OS=Pseudomonas putida (strain W619) GN=msrB PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.150e-39
Identity = 75/122 (61.48%), Postives = 86/122 (70.49%), Query Frame = 3
Query:  141 EEWKRRLTGEQYYITRQKGTERAFTGEYWNTKTPGTYHCICCDTPLFESSTKFDSGTGWPSYYQPIGSNMKSKLDLSIIFMPRQEVLCAVCDAHLGHVFDDGPPPTGKRYCINSASLKLKPK 506
            EEW+  L  EQY + R KGTER FTG+Y + K  GTYHCICCD PLF+S+TKFDSG GWPS+Y PI  +   +   +   M R EV CA CDAHLGHVF DGPPPTG RYCINS  L  KP+
Sbjct:    9 EEWRAMLDPEQYQVCRLKGTERPFTGKYNSEKRAGTYHCICCDLPLFDSNTKFDSGCGWPSFYAPIEDSAMIETRDTSHGMIRTEVTCAQCDAHLGHVFPDGPPPTGLRYCINSVCLDFKPR 130          
The following BLAST results are available for this feature:
BLAST of BQ624296 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 218
Match NameE-valueIdentityDescription
MSRB_THEEB2.163e-4667.20Peptide methionine sulfoxide reductase msrB OS=The... [more]
MSRB_ACAM19.404e-4262.40Peptide methionine sulfoxide reductase msrB OS=Aca... [more]
MSRB_AZOVD1.358e-4057.69Peptide methionine sulfoxide reductase msrB OS=Azo... [more]
MSRB_HAHCH3.951e-4057.48Peptide methionine sulfoxide reductase msrB OS=Hah... [more]
MSRB_ACIAD3.951e-4060.66Peptide methionine sulfoxide reductase msrB OS=Aci... [more]
MSRB_PSEAE6.740e-4061.48Peptide methionine sulfoxide reductase msrB OS=Pse... [more]
MSRB_PSEAB6.740e-4061.48Peptide methionine sulfoxide reductase msrB OS=Pse... [more]
MSRB_PSEA86.740e-4061.48Peptide methionine sulfoxide reductase msrB OS=Pse... [more]
MSRB_PSEA76.740e-4061.48Peptide methionine sulfoxide reductase msrB OS=Pse... [more]
MSRB_PSEPW1.150e-3961.48Peptide methionine sulfoxide reductase msrB OS=Pse... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_01387 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_01387 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ624296 ID=BQ624296; Name=BQ624296; organism=Citrus sinensis; type=EST; length=617bp
TTGTTTCAGCTTCTCCTTCTTTAAGACGGCCCAAAAGAGTTTCCTTGTCA
GTAATTCGCGCCATGGGCTCCTCTGCTTCTTCACAGAAACCCGACAACAT
TCAAGAGGCCAACAGGGTTGATTATGCTTCTATAAGTGATGAAGAGTGGA
AAAGAAGGCTCACAGGGGAGCAATATTACATAACTCGACAAAAAGGGACT
GAGAGGGCTTTTACGGGGGAATATTGGAACACCAAAACCCCTGGTACCTA
CCATTGCATTTGTTGTGACACACCTTTATTCGAATCATCAACCAAATTTG
ACAGTGGTACTGGTTGGCCATCATATTATCAGCCCATAGGAAGCAACATG
AAGTCAAAGTTGGATTTGTCAATTATTTTCATGCCTCGCCAGGAGGTCCT
TTGTGCCGTATGTGATGCTCATCTTGGCCATGTCTTTGATGATGGCCCAC
CACCCACAGGAAAGCGTTACTGTATCAACAGTGCTTCCTTAAAACTGAAG
CCAAAATAGGTATGAATATCAAGCCAGAATACCAGAATGAGCTACATGTA
ATGAACTTCTACTGTTTACACTTGGTAATCAATTTTTCTCTGGGAACTAC
ACTTCTATGACAAATTT
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