C21863

Overview
NameC21863
Unique NameC21863
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length304
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10242 contig Csv1_Contig10242:539..842. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of C21863 vs. ExPASy Swiss-Prot
Match: PIP11_VICFA (Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.072e-41
Identity = 84/93 (90.32%), Postives = 85/93 (91.40%), Query Frame = 2
Query:   26 QYGRLAGGANVVAHGYTKGDGLGAEIIGTFXLVYTVXXATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKD 304
            QY  L GGAN VAHGYTKG GLGAEIIGTF LVYTV  ATDAKR+ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKD
Sbjct:  157 QYQALGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKD 249          
BLAST of C21863 vs. ExPASy Swiss-Prot
Match: PIP11_ARATH (Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1 PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 1.072e-41
Identity = 84/93 (90.32%), Postives = 85/93 (91.40%), Query Frame = 2
Query:   26 QYGRLAGGANVVAHGYTKGDGLGAEIIGTFXLVYTVXXATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKD 304
            QY  L GGAN VAHGYTKG GLGAEIIGTF LVYTV  ATDAKR+ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKD
Sbjct:  157 QYQALGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKD 249          
BLAST of C21863 vs. ExPASy Swiss-Prot
Match: PIP15_ARATH (Probable aquaporin PIP1-5 OS=Arabidopsis thaliana GN=PIP1-5 PE=2 SV=2)

HSP 1 Score: 167.933 bits (424), Expect = 1.400e-41
Identity = 86/100 (86.00%), Postives = 88/100 (88.00%), Query Frame = 2
Query:    5 RGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFXLVYTVXXATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKD 304
            +GF   G Y    GGANVVAHGYTKG GLGAEI+GTF LVYTV  ATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKD
Sbjct:  152 KGFQ-PGLYQTNGGGANVVAHGYTKGSGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKD 250          
BLAST of C21863 vs. ExPASy Swiss-Prot
Match: PIP2_PEA (Probable aquaporin PIP-type 7a OS=Pisum sativum GN=TRG-31 PE=2 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 1.828e-41
Identity = 83/99 (83.84%), Postives = 89/99 (89.90%), Query Frame = 2
Query:    5 RGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFXLVYTVXXATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNK 301
            +GF G  ++G L GGAN VA GYTKGDGLGAEI+GTF LVYTV  ATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAI++NK
Sbjct:  154 KGFEGKQRFGDLNGGANFVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIVFNK 252          
BLAST of C21863 vs. ExPASy Swiss-Prot
Match: PIP14_ARATH (Probable aquaporin PIP1-4 OS=Arabidopsis thaliana GN=PIP1.4 PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.828e-41
Identity = 84/92 (91.30%), Postives = 84/92 (91.30%), Query Frame = 2
Query:   29 YGRLAGGANVVAHGYTKGDGLGAEIIGTFXLVYTVXXATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKD 304
            Y  L GGAN VAHGYTKG GLGAEIIGTF LVYTV  ATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKD
Sbjct:  159 YQTLGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKD 250          
BLAST of C21863 vs. ExPASy Swiss-Prot
Match: PIP13_ARATH (Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3 PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 1.828e-41
Identity = 84/92 (91.30%), Postives = 84/92 (91.30%), Query Frame = 2
Query:   29 YGRLAGGANVVAHGYTKGDGLGAEIIGTFXLVYTVXXATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKD 304
            Y  L GGAN VAHGYTKG GLGAEIIGTF LVYTV  ATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKD
Sbjct:  158 YQTLGGGANTVAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKD 249          
BLAST of C21863 vs. ExPASy Swiss-Prot
Match: PIP1_SOLLC (Probable aquaporin PIP-type pTOM75 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 2.388e-41
Identity = 86/100 (86.00%), Postives = 89/100 (89.00%), Query Frame = 2
Query:    5 RGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFXLVYTVXXATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKD 304
            +GFM  G Y RL GGANVV  GYTKGDGLGAEIIGTF LVYTV  ATDAKR+ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYN +
Sbjct:  152 KGFM-VGPYQRLGGGANVVNPGYTKGDGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNDE 250          
BLAST of C21863 vs. ExPASy Swiss-Prot
Match: PIP12_ARATH (Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2 PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 4.073e-41
Identity = 82/93 (88.17%), Postives = 85/93 (91.40%), Query Frame = 2
Query:   26 QYGRLAGGANVVAHGYTKGDGLGAEIIGTFXLVYTVXXATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKD 304
            QY  L GGAN +AHGYTKG GLGAEIIGTF LVYTV  ATDAKR+ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAII+NKD
Sbjct:  157 QYQALGGGANTIAHGYTKGSGLGAEIIGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNKD 249          
BLAST of C21863 vs. ExPASy Swiss-Prot
Match: PIP11_ORYSJ (Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica GN=PIP1-1 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.185e-40
Identity = 85/100 (85.00%), Postives = 88/100 (88.00%), Query Frame = 2
Query:    5 RGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFXLVYTVXXATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKD 304
            +GF   G Y    GGANVVA GYTKGDGLGAEI+GTF LVYTV  ATDAKR+ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKD
Sbjct:  154 KGFQ-QGLYMGNGGGANVVASGYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKD 252          
BLAST of C21863 vs. ExPASy Swiss-Prot
Match: PIP13_MAIZE (Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 3.448e-40
Identity = 84/100 (84.00%), Postives = 88/100 (88.00%), Query Frame = 2
Query:    5 RGFMGAGQYGRLAGGANVVAHGYTKGDGLGAEIIGTFXLVYTVXXATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNKD 304
            +GF   G Y    GGANVVA GYTKGDGLGAEI+GTF LVYTV  ATDAKR+ARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYN+D
Sbjct:  157 KGFQ-QGLYMGNGGGANVVAPGYTKGDGLGAEIVGTFILVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNRD 255          
The following BLAST results are available for this feature:
BLAST of C21863 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
PIP11_VICFA1.072e-4190.32Aquaporin PIP1.1 OS=Vicia faba GN=PIP1.1 PE=2 SV=1[more]
PIP11_ARATH1.072e-4190.32Aquaporin PIP1-1 OS=Arabidopsis thaliana GN=PIP1-1... [more]
PIP15_ARATH1.400e-4186.00Probable aquaporin PIP1-5 OS=Arabidopsis thaliana ... [more]
PIP2_PEA1.828e-4183.84Probable aquaporin PIP-type 7a OS=Pisum sativum GN... [more]
PIP14_ARATH1.828e-4191.30Probable aquaporin PIP1-4 OS=Arabidopsis thaliana ... [more]
PIP13_ARATH1.828e-4191.30Aquaporin PIP1-3 OS=Arabidopsis thaliana GN=PIP1-3... [more]
PIP1_SOLLC2.388e-4186.00Probable aquaporin PIP-type pTOM75 OS=Solanum lyco... [more]
PIP12_ARATH4.073e-4188.17Aquaporin PIP1-2 OS=Arabidopsis thaliana GN=PIP1-2... [more]
PIP11_ORYSJ1.185e-4085.00Aquaporin PIP1-1 OS=Oryza sativa subsp. japonica G... [more]
PIP13_MAIZE3.448e-4084.00Aquaporin PIP1-3/PIP1-4 OS=Zea mays GN=PIP1-3 PE=2... [more]

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Properties
Property NameValue
Genbank descriptionC21863 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSH-27R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21863 ID=C21863; Name=C21863; organism=Citrus sinensis; type=EST; length=304bp
GGCACGAGGTTTCATGGGTGCCGGCCAATACGGGCGGCTCGCCGGCGGTG
CCAACGTCGTAGCTCATGGCTACACCAAGGGTGATGGTCTTGGTGCCGAG
ATTATTGGTACTTTTTTNCTTGTCTACACAGTTTTNTNTGCCACTGATGC
CAAACGGAGCGCCAGGGACTCTCATGTTCCTATTTTGGCTCCTCTGCCAA
TTGGGTTCGCTGTGTTTTTGGTTCACTTGGCTACCATCCCAATTACCGGA
ACTGGCATCAACCCAGCGAGGAGTCTTGGAGCTGCAATCATCTACAACAA
GGAC
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