C21902

Overview
NameC21902
Unique NameC21902
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length240
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9154 contig Csv1_Contig9154:39..278. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of C21902 vs. ExPASy Swiss-Prot
Match: UGDH_SOYBN (UDP-glucose 6-dehydrogenase OS=Glycine max PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 1.900e-30
Identity = 65/78 (83.33%), Postives = 71/78 (91.03%), Query Frame = 2
Query:    5 RETPXGQKAVKALKDVYAHWVPEDRXLTTNLXSAELSKLAANAFLXQRISSVNAMSALCEATGANVSQVAFAVGTDSR 238
            RETP GQKA++ LKDVYA WVPE+R LTTNL SAELSKLAANAFL QRISSVNAMSALCEATGANV QV+++VGTDSR
Sbjct:  179 RETPEGQKAIQTLKDVYAQWVPEERILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGANVQQVSYSVGTDSR 256          
BLAST of C21902 vs. ExPASy Swiss-Prot
Match: UGDH1_ARATH (Probable UDP-glucose 6-dehydrogenase 1 OS=Arabidopsis thaliana GN=UGD1 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 7.981e-29
Identity = 63/78 (80.77%), Postives = 71/78 (91.03%), Query Frame = 2
Query:    5 RETPXGQKAVKALKDVYAHWVPEDRXLTTNLXSAELSKLAANAFLXQRISSVNAMSALCEATGANVSQVAFAVGTDSR 238
            RETP G KAV+ LK+VYAHWVPE + +TTNL SAELSKLAANAFL QRISSVNAMSALCEATGA+V+QV++AVGTDSR
Sbjct:  179 RETPEGFKAVQTLKNVYAHWVPEGQIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVTQVSYAVGTDSR 256          
BLAST of C21902 vs. ExPASy Swiss-Prot
Match: UGDH2_ARATH (Probable UDP-glucose 6-dehydrogenase 2 OS=Arabidopsis thaliana GN=UGD2 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.824e-28
Identity = 61/78 (78.21%), Postives = 71/78 (91.03%), Query Frame = 2
Query:    5 RETPXGQKAVKALKDVYAHWVPEDRXLTTNLXSAELSKLAANAFLXQRISSVNAMSALCEATGANVSQVAFAVGTDSR 238
            RETP G KAV+ LK+VYA+WVPE + +TTNL SAELSKLAANAFL QRISSVNAMSALCE+TGA+V+QV++AVGTDSR
Sbjct:  179 RETPEGFKAVQTLKEVYANWVPEGQIITTNLWSAELSKLAANAFLAQRISSVNAMSALCESTGADVTQVSYAVGTDSR 256          
BLAST of C21902 vs. ExPASy Swiss-Prot
Match: UGDH_MOUSE (UDP-glucose 6-dehydrogenase OS=Mus musculus GN=Ugdh PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.657e-24
Identity = 54/77 (70.13%), Postives = 65/77 (84.42%), Query Frame = 2
Query:    8 ETPXGQKAVKALKDVYAHWVPEDRXLTTNLXSAELSKLAANAFLXQRISSVNAMSALCEATGANVSQVAFAVGTDSR 238
            ETP GQKAV+AL  VY HWVP+++ LTTN  S+ELSKLAANAFL QRISS+N++SALCEATGA+V +VA A+G D R
Sbjct:  184 ETPEGQKAVRALCAVYEHWVPKEKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATGADVEEVATAIGMDQR 260          
BLAST of C21902 vs. ExPASy Swiss-Prot
Match: UGDH_CHICK (UDP-glucose 6-dehydrogenase OS=Gallus gallus GN=UGDH PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 4.532e-24
Identity = 53/77 (68.83%), Postives = 66/77 (85.71%), Query Frame = 2
Query:    8 ETPXGQKAVKALKDVYAHWVPEDRXLTTNLXSAELSKLAANAFLXQRISSVNAMSALCEATGANVSQVAFAVGTDSR 238
            ++P GQKAV+AL  VY HWVP+++ LTTN  S+ELSKLAANAFL QRISS+N++SALCEATGA+V +VA A+GTD R
Sbjct:  184 DSPEGQKAVRALCAVYEHWVPKEKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATGADVEEVARAIGTDQR 260          
BLAST of C21902 vs. ExPASy Swiss-Prot
Match: UGDH_PONAB (UDP-glucose 6-dehydrogenase OS=Pongo abelii GN=UGDH PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.010e-23
Identity = 53/77 (68.83%), Postives = 64/77 (83.12%), Query Frame = 2
Query:    8 ETPXGQKAVKALKDVYAHWVPEDRXLTTNLXSAELSKLAANAFLXQRISSVNAMSALCEATGANVSQVAFAVGTDSR 238
            ETP GQ+AV+AL  VY HWVP ++ LTTN  S+ELSKLAANAFL QRISS+N++SALCEATGA+V +VA A+G D R
Sbjct:  184 ETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATGADVEEVATAIGMDQR 260          
BLAST of C21902 vs. ExPASy Swiss-Prot
Match: UGDH_HUMAN (UDP-glucose 6-dehydrogenase OS=Homo sapiens GN=UGDH PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.010e-23
Identity = 53/77 (68.83%), Postives = 64/77 (83.12%), Query Frame = 2
Query:    8 ETPXGQKAVKALKDVYAHWVPEDRXLTTNLXSAELSKLAANAFLXQRISSVNAMSALCEATGANVSQVAFAVGTDSR 238
            ETP GQ+AV+AL  VY HWVP ++ LTTN  S+ELSKLAANAFL QRISS+N++SALCEATGA+V +VA A+G D R
Sbjct:  184 ETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATGADVEEVATAIGMDQR 260          
BLAST of C21902 vs. ExPASy Swiss-Prot
Match: UGDH_RAT (UDP-glucose 6-dehydrogenase OS=Rattus norvegicus GN=Ugdh PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.722e-23
Identity = 52/77 (67.53%), Postives = 65/77 (84.42%), Query Frame = 2
Query:    8 ETPXGQKAVKALKDVYAHWVPEDRXLTTNLXSAELSKLAANAFLXQRISSVNAMSALCEATGANVSQVAFAVGTDSR 238
            ETP GQ+AV+AL  VY HWVP+++ LTTN  S+ELSKLAANAFL QRISS+N++SALCE+TGA+V +VA A+G D R
Sbjct:  184 ETPEGQRAVQALCAVYEHWVPKEKILTTNTWSSELSKLAANAFLAQRISSINSISALCESTGADVEEVATAIGMDQR 260          
BLAST of C21902 vs. ExPASy Swiss-Prot
Match: UGDH_BOVIN (UDP-glucose 6-dehydrogenase OS=Bos taurus GN=UGDH PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 2.938e-23
Identity = 52/77 (67.53%), Postives = 63/77 (81.82%), Query Frame = 2
Query:    8 ETPXGQKAVKALKDVYAHWVPEDRXLTTNLXSAELSKLAANAFLXQRISSVNAMSALCEATGANVSQVAFAVGTDSR 238
            ETP GQ+AV+AL  VY HWVP ++ LTTN  S+ELSKL ANAFL QRISS+N++SALCEATGA+V +VA A+G D R
Sbjct:  184 ETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLTANAFLAQRISSINSISALCEATGADVEEVATAIGMDQR 260          
BLAST of C21902 vs. ExPASy Swiss-Prot
Match: UGDH_DROME (UDP-glucose 6-dehydrogenase OS=Drosophila melanogaster GN=sgl PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.116e-22
Identity = 51/77 (66.23%), Postives = 63/77 (81.82%), Query Frame = 2
Query:    8 ETPXGQKAVKALKDVYAHWVPEDRXLTTNLXSAELSKLAANAFLXQRISSVNAMSALCEATGANVSQVAFAVGTDSR 238
            ETP G +AV+ L  +Y HW+P+   LTTN  S+ELSKLAANAFL QRISS+N++SA+CEATGA+VS+VA AVG DSR
Sbjct:  180 ETPEGHQAVEKLSWIYEHWIPKQNILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEATGADVSEVARAVGLDSR 256          
The following BLAST results are available for this feature:
BLAST of C21902 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
UGDH_SOYBN1.900e-3083.33UDP-glucose 6-dehydrogenase OS=Glycine max PE=2 SV... [more]
UGDH1_ARATH7.981e-2980.77Probable UDP-glucose 6-dehydrogenase 1 OS=Arabidop... [more]
UGDH2_ARATH8.824e-2878.21Probable UDP-glucose 6-dehydrogenase 2 OS=Arabidop... [more]
UGDH_MOUSE2.657e-2470.13UDP-glucose 6-dehydrogenase OS=Mus musculus GN=Ugd... [more]
UGDH_CHICK4.532e-2468.83UDP-glucose 6-dehydrogenase OS=Gallus gallus GN=UG... [more]
UGDH_PONAB1.010e-2368.83UDP-glucose 6-dehydrogenase OS=Pongo abelii GN=UGD... [more]
UGDH_HUMAN1.010e-2368.83UDP-glucose 6-dehydrogenase OS=Homo sapiens GN=UGD... [more]
UGDH_RAT1.722e-2367.53UDP-glucose 6-dehydrogenase OS=Rattus norvegicus G... [more]
UGDH_BOVIN2.938e-2367.53UDP-glucose 6-dehydrogenase OS=Bos taurus GN=UGDH ... [more]
UGDH_DROME1.116e-2266.23UDP-glucose 6-dehydrogenase OS=Drosophila melanoga... [more]

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Properties
Property NameValue
Genbank descriptionC21902 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSO-12R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21902 ID=C21902; Name=C21902; organism=Citrus sinensis; type=EST; length=240bp
GGCACGAGAAACGCCAGANGGCCAGAAAGCCGTCAAAGCCTTGAAGGATG
TGTATGCACACTGGGTCCCAGAAGACCGANTTTTGACCACCAACCTCNGG
TCTGCAGAGCTTTCGAAGCTTGCAGCCAATGCTTTCTTGGNACAGAGGAT
CTCATCTGTTAATGCCATGTCAGCNCTCTGCGAGGCAACTGGAGCTAATG
TCAGTCAGGTGGCATTTGCTGTTGGTACAGACTCTAGGAT
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