C21905

Overview
NameC21905
Unique NameC21905
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length312
Libraries
Library NameType
Valencia orange young seeds cDNAcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of C21905 vs. ExPASy Swiss-Prot
Match: FABZ_ANAVT ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=fabZ PE=3 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 5.845e-24
Identity = 57/87 (65.52%), Postives = 66/87 (75.86%), Query Frame = 1
Query:   10 YNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQ-PEVGGSRENFXFAGIDKVRFRKPVIAGDTLVMRMTLV 267
            Y PG  AV IKNVTIN+  F GHFPDRP+MPGVL+VEAMAQVGG+VM Q P + G    F FAGIDKVRFR+ V+ GD LVM + L+
Sbjct:   49 YTPGKQAVGIKNVTINEPHFTGHFPDRPLMPGVLIVEAMAQVGGIVMTQLPNLEGGL--FVFAGIDKVRFRRQVVPGDQLVMTVELL 133          
BLAST of C21905 vs. ExPASy Swiss-Prot
Match: FABZ_ANASP ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Anabaena sp. (strain PCC 7120) GN=fabZ PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 9.971e-24
Identity = 57/87 (65.52%), Postives = 66/87 (75.86%), Query Frame = 1
Query:   10 YNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQ-PEVGGSRENFXFAGIDKVRFRKPVIAGDTLVMRMTLV 267
            Y PG  AV IKNVTIN+  F GHFPDRP+MPGVL+VEAMAQVGG+VM Q P + G    F FAGIDKVRFR+ V+ GD LVM + L+
Sbjct:   55 YTPGKQAVGIKNVTINEPHFTGHFPDRPLMPGVLIVEAMAQVGGIVMTQLPGLEGGL--FVFAGIDKVRFRRQVVPGDQLVMTVELL 139          
BLAST of C21905 vs. ExPASy Swiss-Prot
Match: FABZ_SYNSC ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Synechococcus sp. (strain CC9605) GN=fabZ PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.701e-23
Identity = 55/90 (61.11%), Postives = 72/90 (80.00%), Query Frame = 1
Query:   10 YNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQ-PEVGGSRENFXFAGIDKVRFRKPVIAGDTLVMRMTLVKLQ 276
            ++PGVSA AIKNVT+N+  F GHFP+RP+MPGVL+VEAMAQVGGL++ Q P++   +  F FAGID VRFR+PV+ GD LV+R  L+ L+
Sbjct:   35 HDPGVSATAIKNVTMNEPQFQGHFPERPLMPGVLIVEAMAQVGGLIVTQMPDL--PKGLFVFAGIDGVRFRRPVVPGDQLVIRCELLSLK 122          
BLAST of C21905 vs. ExPASy Swiss-Prot
Match: FABZ_MICAN ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Microcystis aeruginosa (strain NIES-843) GN=fabZ PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.221e-23
Identity = 53/99 (53.54%), Postives = 71/99 (71.72%), Query Frame = 1
Query:   10 YNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFXFAGIDKVRFRKPVIAGDTLVMRMTLVKLQNASDSKDXGK 306
            Y PG  AV +KNVTIN+ FFPGH P+RP+MPGVL+VE+MAQVGG+++ Q   G   + F FAGIDK RFR+PV+ GD L+M + L+  +    +K  G+
Sbjct:   43 YVPGQKAVGLKNVTINEPFFPGHIPNRPLMPGVLIVESMAQVGGVILTQLP-GMKGKFFAFAGIDKTRFRRPVVPGDQLIMTVELLSFKMNKIAKMQGE 140          
BLAST of C21905 vs. ExPASy Swiss-Prot
Match: FABZ_SYNS9 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Synechococcus sp. (strain CC9902) GN=fabZ PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.901e-23
Identity = 53/90 (58.89%), Postives = 71/90 (78.89%), Query Frame = 1
Query:   10 YNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQ-PEVGGSRENFXFAGIDKVRFRKPVIAGDTLVMRMTLVKLQ 276
            Y PGVSA AIKN+T+N+  F GHFP+RP+MPGVL+VEAMAQVGGL++ Q P++   +  F FAGID VRFR+PV+ GD L+++  L+ L+
Sbjct:   35 YEPGVSATAIKNITMNEPQFQGHFPERPLMPGVLIVEAMAQVGGLIVAQIPDL--PKGLFVFAGIDGVRFRRPVVPGDQLIIQCELLSLK 122          
BLAST of C21905 vs. ExPASy Swiss-Prot
Match: FABZ_SYNY3 ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Synechocystis sp. (strain PCC 6803) GN=fabZ PE=3 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 3.789e-23
Identity = 53/86 (61.63%), Postives = 67/86 (77.91%), Query Frame = 1
Query:   10 YNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQ-PEVGGSRENFXFAGIDKVRFRKPVIAGDTLVMRMTL 264
            + PG  AV +KNVTIN+ FFPGH PDRPIMPGVL+VE+MAQVGG+++ Q P + G  + F FAGID VRFR+PV+ GD L+M + L
Sbjct:   48 FQPGKCAVGLKNVTINEPFFPGHIPDRPIMPGVLIVESMAQVGGVILTQLPGMRG--KFFAFAGIDGVRFRRPVVPGDQLIMTVEL 131          
BLAST of C21905 vs. ExPASy Swiss-Prot
Match: FABZ_PROMA ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Prochlorococcus marinus GN=fabZ PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.440e-22
Identity = 54/100 (54.00%), Postives = 70/100 (70.00%), Query Frame = 1
Query:   10 YNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQ-PEVGGSRENFXFAGIDKVRFRKPVIAGDTLVMRMTLVKLQNASDSKDXGK 306
            Y PG SA  IKNVTIN+  F GHFP RP+MPGVL+VEAMAQVGGL++ Q P++   +  F FAGID VRFR+PV+ GD L++   L+ ++     K  G+
Sbjct:   35 YEPGKSATGIKNVTINEPHFQGHFPGRPLMPGVLIVEAMAQVGGLIVKQIPDL--PKGLFVFAGIDSVRFRRPVVPGDQLLINCELISIKRQRFGKVKGE 132          
BLAST of C21905 vs. ExPASy Swiss-Prot
Match: FABZ_THEEB ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Thermosynechococcus elongatus (strain BP-1) GN=fabZ PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.207e-22
Identity = 53/99 (53.54%), Postives = 70/99 (70.71%), Query Frame = 1
Query:   10 YNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQPEVGGSRENFXFAGIDKVRFRKPVIAGDTLVMRMTLVKLQNASDSKDXGK 306
            Y P   AV +KNVTIN+ FF GHFP RPIMPGVL+VEA+AQVGG+V++Q      + +  FAGIDKVRFR+PV+ GD L++R  L+ ++     K  G+
Sbjct:   37 YVPEKYAVGLKNVTINEPFFQGHFPGRPIMPGVLIVEALAQVGGVVLMQMNWAKDKLS-VFAGIDKVRFRRPVVPGDQLILRAELLVVKQQRIGKMQGR 134          
BLAST of C21905 vs. ExPASy Swiss-Prot
Match: FABZ_SYNPX ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Synechococcus sp. (strain WH8102) GN=fabZ PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.207e-22
Identity = 53/90 (58.89%), Postives = 68/90 (75.56%), Query Frame = 1
Query:   10 YNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQ-PEVGGSRENFXFAGIDKVRFRKPVIAGDTLVMRMTLVKLQ 276
            + PGVSA  IKNVT+N+  F GHFP RP+MPGVL+VEAMAQVGGL++ Q P++   +  F FAGID VRFR+PV+ GD LV+   L+ L+
Sbjct:   40 HEPGVSATGIKNVTVNEPQFQGHFPGRPLMPGVLIVEAMAQVGGLIVTQMPDL--PKGLFVFAGIDGVRFRRPVVPGDQLVIHCELLSLK 127          
BLAST of C21905 vs. ExPASy Swiss-Prot
Match: FABZ_SYNJB ((3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Synechococcus sp. GN=fabZ PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.145e-22
Identity = 51/90 (56.67%), Postives = 67/90 (74.44%), Query Frame = 1
Query:   10 YNPGVSAVAIKNVTINDNFFPGHFPDRPIMPGVLMVEAMAQVGGLVMLQ-PEVGGSRENFXFAGIDKVRFRKPVIAGDTLVMRMTLVKLQ 276
            Y PG  AV +KNVT N+ FF GHFP+RPIMPGVL+VEAMAQ+GG+V+ + P+V G      FAGID VRFR+PV+ GD L++   L+ ++
Sbjct:   50 YQPGQRAVGLKNVTFNEPFFQGHFPNRPIMPGVLIVEAMAQIGGIVLTKLPDVAGRLA--LFAGIDGVRFRRPVLPGDQLLLSADLLTIR 137          
The following BLAST results are available for this feature:
BLAST of C21905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FABZ_ANAVT5.845e-2465.52(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_ANASP9.971e-2465.52(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SYNSC1.701e-2361.11(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_MICAN2.221e-2353.54(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SYNS92.901e-2358.89(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SYNY33.789e-2361.63(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_PROMA1.440e-2254.00(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_THEEB3.207e-2253.54(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SYNPX3.207e-2258.89(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]
FABZ_SYNJB7.145e-2256.67(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehyd... [more]

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Properties
Property NameValue
Genbank descriptionC21905 Valencia orange young seeds cDNA Citrus sinensis cDNA clone corVSSM-16R 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>C21905 ID=C21905; Name=C21905; organism=Citrus sinensis; type=EST; length=312bp
GGCACGAGATACAATCCAGGAGTTTCAGCTGTTGCTATTAAGAATGTTAC
TATTAATGATAACTTCTTTCCTGGCCATTTTCCTGATAGGCCAATTATGC
CCGGTGTTCTCATGGTTGAGGCAATGGCACAGGTTGGTGGCTTGGTTATG
CTGCAACCAGAAGTGGGAGGCTCTCGTGAAAATTTCTNCTTTGCTGGAAT
TGATAAAGTAAGATTCAGGAAACCAGTGATTGCAGGTGACACTTTGGTCA
TGAGAATGACACTTGTCAAGCTACAGAACGCTTCGGATAGCAAAGATGNA
GGGAAGTTATGT
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