CB290240

Overview
NameCB290240
Unique NameCB290240
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length806
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig126 contig Csv1_Contig126:2..807. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CB290240 vs. ExPASy Swiss-Prot
Match: USPAL_ARATH (Universal stress protein A-like protein OS=Arabidopsis thaliana GN=At3g01520 PE=1 SV=2)

HSP 1 Score: 264.233 bits (674), Expect = 5.952e-70
Identity = 123/165 (74.55%), Postives = 145/165 (87.88%), Query Frame = -2 
Query:  248 MEGEPTRIIVAVNESTIKGYPHASISSRGAFEWSVQKIIRSNTSGFKLLFLHVQVPDEDGFDDMDSIYASPEDFRRMQHRDKVRGLHLLEYFVNRCHEIGVACEAWIKKGDPKEVICREVQRVQPDLLVVGSRGLGPFQRVFVGTVSEFCVKHAECPVITIKRRA 742
            M  EPT+++VAVN STIK YP+ SIS + AFEW+++KI+RSNTS FK+L LHVQV DEDGFDD+DSIYASPEDFR M+  +K +GLHLLE+FVN+CHEIGV CEAWIK GDPK+VIC+EV+RV+PD LVVGSRGLG FQ+VFVGTVS FCVKHAECPV+TIKR A
Sbjct:    1 MGSEPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKAKGLHLLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAECPVMTIKRNA 165
The following BLAST results are available for this feature:
BLAST of CB290240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
USPAL_ARATH5.952e-7074.55Universal stress protein A-like protein OS=Arabido... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01ac05_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ac05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290240 ID=CB290240; Name=CB290240; organism=Citrus sinensis; type=EST; length=806bp
TTTTTTTTTTTTAATTTTTACATGCTGGCCGTAAGTTACATTGAATGTAA
CTTAGGCGGACCCATTTAACAGATTACAAAGCATATTCGTCCAGGCAATA
TATTCTCAACAAATAGACAAGTATTTCTAAGCAGTACATTTAATATCTCC
CCCAACTAACGTTTTCTGTCCAAAGTTTATCAACAGGATGAAAAATATTG
AGATAGTGATCAGTTCAGTCATCAACAGGGTCCTCAGGAGTTTCATCTGC
CCTACGTTTAATGGTTATCACAGGGCACTCAGCATGCTTCACACAAAATT
CACTCACAGTCCCAACAAAGACCCTCTGAAAAGGACCAAGTCCCCGACTT
CCCACAACCAGGAGATCTGGCTGGACACGTTGCACTTCGCGGCAGATTAC
TTCTTTGGGATCTCCTTTCTTAATCCATGCTTCACAAGCTACCCCAATCT
CATGACATCTGTTGACAAAATACTCCAGAAGATGAAGTCCTCTCACTTTG
TCCCTGTGCTGCATGCGTCTGAAATCTTCAGGAGATGCATATATGCTATC
CATATCATCAAAACCATCTTCATCGGGAACCTGGACGTGGAGAAAGAGAA
GCTTGAAGCCAGAAGTGTTAGAGCGAATGATCTTCTGCACGCTCCACTCG
AACGCTCCTCTGCTGCTAATCGACGCGTGCGGGTAACCTTTTATCGTCGA
CTCGTTCACCGCCACTATTATCCGAGTCGGCTCGCCTTCCATTTTCACTC
GCTCAGTGTGACCAACTCAATTCAACTCAGACACTCTCTTTTCTCTTTCC
CTCGTG
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