CB290314

Overview
NameCB290314
Unique NameCB290314
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8816 contig Csv1_Contig8816:114..882. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CB290314 vs. ExPASy Swiss-Prot
Match: TSJT1_TOBAC (Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.190e-13
Identity = 33/62 (53.23%), Postives = 45/62 (72.58%), Query Frame = -3 
Query:  582 NLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGPLSGYFAFIVYDKSTSPLFVA 767
            N   LR+ YGL++ A E ++++EAYK LRDRAPYPP+ V+  L G FAFI++D   S LF+A
Sbjct:   87 NTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAPYPPDQVIKELEGKFAFILFDSKASTLFLA 148
The following BLAST results are available for this feature:
BLAST of CB290314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TSJT1_TOBAC6.190e-1353.23Stem-specific protein TSJT1 OS=Nicotiana tabacum G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS01_01ag04_b1 Washington Navel orange cold acclimated flavedo & albedo cDNA library Citrus sinensis cDNA clone UCRCS01_01ag04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CB290314 ID=CB290314; Name=CB290314; organism=Citrus sinensis; type=EST; length=769bp
CAAACCCTGGGACAAAACTTTATTAAACAGCAAACATAACTGTACATTGG
ACAAGACTGGATAAAAGGTTAATTTGAAAGCAAACACCTAAGAAACTTGA
AAGGAGCTATAGCTACAAAGAAAGCTGGGGGCTACATTTCTCACAAGCAT
ACACTATTTCCATTCCAGTTGATGATTTTTTGCTACACTCATTTTGTTAT
TCACATGGACCCTCTTGCAGCTTGCATCCCCACAAACTTTTTTTCCCCCA
AACCGCGGATTTTTAACTGTTGGCTAATATCTCAAGGGGAAAAAAAAGAT
CTTCTAACCTTCTACTCTGGGGCTGCAAAAACTGCTGGCCCTTCCACCTT
AAATGTAGCACCCCAAATCTCTTCTTCCGCAGCAGGAACCGCAGTGATCT
TGTTCTTTGGATTCTCAAAGCTTCTCAGTCCTCCAACTGCTGTTGAAAAA
AAACAACCTTGAGGGAAAAAAGCAAGTGACTTGCCGCAAGCACCTTTGAG
CAAGTCAGCATCATCAGCAAAGGCAACATGTCCATCAGCAGTGATTCCCC
AATAAAGAGGAACCTTACCAAATTGGTCAAAAGCCACAAACAAGGGGGAG
GTGGACTTGTCGTAAACAATGAAGGCAAAGTACCCACTAAGGGGGCCAAC
GACATGGTTCGGTGGGTAAGGGGCCCGATCACGCAAAGCCTTGTATGCCT
CAATCACCAAGATCACTTCATTTGCCGACTTAGCTAGTCCATATTGCTGC
CTCAGGCTTCCCAAGTTAT
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